Wall clock time and date at job start Tue Mar 31 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47357 * 2 1 4 4 C 1.53006 * 109.47176 * 120.00064 * 2 1 3 5 5 C 1.53003 * 109.46941 * 64.99575 * 4 2 1 6 6 H 1.08997 * 109.48818 * 304.97236 * 5 4 2 7 7 O 1.42906 * 109.47775 * 65.00400 * 5 4 2 8 8 C 1.42902 * 114.09796 * 181.13906 * 7 5 4 9 9 C 1.53093 * 109.42340 * 298.83477 * 8 7 5 10 10 C 1.53207 * 109.14959 * 57.60128 * 9 8 7 11 11 C 1.53088 * 109.47685 * 184.94388 * 5 4 2 12 12 H 1.08994 * 109.52247 * 62.43992 * 11 5 4 13 13 N 1.46905 * 109.52324 * 302.31503 * 11 5 4 14 14 C 1.46902 * 111.00051 * 155.00279 * 13 11 5 15 15 C 1.52993 * 109.46981 * 185.40853 * 14 13 11 16 16 C 1.50704 * 115.55241 * 65.05306 * 15 14 13 17 17 H 1.08006 * 119.99591 * 265.33034 * 16 15 14 18 18 C 1.37871 * 119.99966 * 85.32774 * 16 15 14 19 19 N 1.31507 * 120.00568 * 353.48533 * 18 16 15 20 20 Si 1.86806 * 119.99616 * 173.48824 * 18 16 15 21 21 H 1.48498 * 109.47373 * 59.99925 * 20 18 16 22 22 H 1.48508 * 109.46906 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46978 * 299.99612 * 20 18 16 24 24 C 1.52999 * 117.50123 * 279.37990 * 15 14 13 25 25 C 1.52999 * 117.49931 * 210.71892 * 15 14 13 26 26 H 1.08994 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46878 * 300.00200 * 1 2 3 28 28 H 1.09000 * 109.47195 * 59.99634 * 1 2 3 29 29 H 1.09006 * 109.46878 * 239.99800 * 2 1 3 30 30 H 1.09003 * 109.47092 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47217 * 299.99914 * 3 2 1 32 32 H 1.08997 * 109.47527 * 59.99933 * 3 2 1 33 33 H 1.08999 * 109.46756 * 305.00107 * 4 2 1 34 34 H 1.08996 * 109.46649 * 184.99591 * 4 2 1 35 35 H 1.09007 * 109.47699 * 58.82316 * 8 7 5 36 36 H 1.08992 * 109.48286 * 178.84355 * 8 7 5 37 37 H 1.08998 * 109.52097 * 177.51451 * 9 8 7 38 38 H 1.08996 * 109.52341 * 297.70759 * 9 8 7 39 39 H 1.09000 * 109.54314 * 183.15695 * 10 9 8 40 40 H 1.09004 * 109.54028 * 62.89258 * 10 9 8 41 41 H 1.00904 * 110.99951 * 278.95524 * 13 11 5 42 42 H 1.08996 * 109.46716 * 305.41090 * 14 13 11 43 43 H 1.08999 * 109.46777 * 65.40741 * 14 13 11 44 44 H 0.97003 * 120.00630 * 180.02562 * 19 18 16 45 45 H 1.09006 * 117.49849 * 359.97438 * 24 15 14 46 46 H 1.09002 * 117.50538 * 145.02139 * 24 15 14 47 47 H 1.08993 * 117.50410 * 214.98007 * 25 15 14 48 48 H 1.09002 * 117.49864 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1880 6 1 0.5562 -2.2710 1.0533 7 8 2.2979 -2.8264 0.0903 8 6 1.9686 -4.2072 -0.0745 9 6 2.3836 -4.9826 1.1786 10 6 1.6829 -4.3772 2.3992 11 6 2.0367 -2.8898 2.4920 12 1 1.4994 -2.4378 3.3257 13 7 3.4831 -2.7414 2.7019 14 6 3.8207 -2.8382 4.1284 15 6 5.3100 -2.5456 4.3209 16 6 5.7467 -1.1444 3.9790 17 1 6.1406 -0.9260 2.9973 18 6 5.6434 -0.1413 4.9192 19 7 5.0474 -0.3755 6.0678 20 14 6.3502 1.5504 4.5615 21 1 5.6913 2.1179 3.3578 22 1 6.1100 2.4431 5.7238 23 1 7.8106 1.4355 4.3186 24 6 6.2954 -3.6814 4.0384 25 6 6.0231 -3.2447 5.4800 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9564 -0.8900 32 1 1.6768 1.9564 0.8899 33 1 1.6054 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2951 35 1 0.8939 -4.3090 -0.2257 36 1 2.4969 -4.6061 -0.9403 37 1 2.0933 -6.0279 1.0729 38 1 3.4637 -4.9148 1.3079 39 1 2.0169 -4.8884 3.3021 40 1 0.6039 -4.4894 2.2931 41 1 3.9984 -3.4200 2.1615 42 1 3.2323 -2.1134 4.6909 43 1 3.5984 -3.8432 4.4869 44 1 4.9744 0.3304 6.7292 45 1 5.8826 -4.6373 3.7157 46 1 7.2597 -3.4153 3.6055 47 1 6.8084 -2.6914 5.9950 48 1 5.4312 -3.9127 6.1057 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602818902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:36 Heat of formation + Delta-G solvation = -44.428371 kcal Electronic energy + Delta-G solvation = -24031.566278 eV Core-core repulsion = 20893.231515 eV Total energy + Delta-G solvation = -3138.334763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.68317 -36.81810 -35.91551 -34.57558 -32.05981 -31.76600 -30.00800 -26.97401 -26.73504 -25.53307 -24.43427 -23.36652 -22.19330 -21.01747 -19.53428 -19.10882 -18.93718 -16.51890 -15.99159 -15.60934 -15.03043 -14.75140 -14.50717 -14.34780 -14.00891 -13.83224 -13.35313 -13.07526 -12.90833 -12.84066 -12.26741 -12.03047 -11.87836 -11.75372 -11.67452 -11.43323 -11.23542 -11.03179 -10.88991 -10.86095 -10.56681 -10.41442 -10.31920 -10.26898 -10.21850 -10.11654 -9.80432 -9.50004 -9.04345 -8.73335 -8.29627 -7.99404 -7.35748 -5.89386 -3.90022 3.40352 3.43872 3.48005 4.06873 4.53066 4.81341 4.87528 4.99304 5.05997 5.17027 5.23936 5.28328 5.40957 5.41703 5.47420 5.50888 5.61650 5.70587 5.78329 5.83683 5.86258 5.97149 6.04200 6.06785 6.08128 6.13271 6.22092 6.23964 6.26966 6.35577 6.40248 6.45581 6.55989 6.60045 6.70341 6.76134 6.79315 6.95408 7.02445 7.17081 7.52339 7.60456 7.66631 8.03653 8.06658 8.29969 8.63769 9.08752 9.72610 11.20534 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013007 B = 0.006933 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.098611 B = 4037.539895 C = 5630.570587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.096 4.096 5 C 0.108 3.892 6 H 0.049 0.951 7 O -0.368 6.368 8 C 0.064 3.936 9 C -0.156 4.156 10 C -0.154 4.154 11 C 0.057 3.943 12 H 0.080 0.920 13 N -0.650 5.650 14 C 0.108 3.892 15 C 0.056 3.944 16 C -0.466 4.466 17 H 0.059 0.941 18 C 0.068 3.932 19 N -0.887 5.887 20 Si 0.885 3.115 21 H -0.276 1.276 22 H -0.291 1.291 23 H -0.280 1.280 24 C -0.216 4.216 25 C -0.160 4.160 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.333 0.667 42 H 0.074 0.926 43 H -0.010 1.010 44 H 0.256 0.744 45 H 0.057 0.943 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.471 -5.194 -9.961 14.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.133 4.133 5 C 0.050 3.950 6 H 0.067 0.933 7 O -0.287 6.287 8 C -0.014 4.014 9 C -0.194 4.194 10 C -0.193 4.193 11 C -0.055 4.055 12 H 0.098 0.902 13 N -0.280 5.280 14 C -0.020 4.020 15 C 0.055 3.945 16 C -0.504 4.504 17 H 0.077 0.923 18 C -0.133 4.133 19 N -0.525 5.525 20 Si 0.713 3.287 21 H -0.201 1.201 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.253 4.253 25 C -0.198 4.198 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.153 0.847 42 H 0.092 0.908 43 H 0.008 0.992 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.408 -4.290 -9.890 14.309 hybrid contribution 0.017 -0.375 0.440 0.579 sum -9.391 -4.665 -9.450 14.116 Atomic orbital electron populations 1.21901 0.96351 1.01095 1.01054 1.21114 0.94770 0.96015 0.99600 1.21819 1.01481 0.96128 1.00883 1.21511 1.04357 0.90966 0.96508 1.22190 0.94041 0.93549 0.85262 0.93319 1.87971 1.69184 1.21767 1.49779 1.22447 0.98848 0.82954 0.97120 1.22161 1.01824 0.99411 0.95965 1.22307 1.00183 0.98580 0.98266 1.22217 0.92282 0.92814 0.98156 0.90167 1.60315 1.02233 1.55933 1.09554 1.21573 0.98111 0.95653 0.86699 1.18811 0.87646 0.91562 0.96483 1.20257 1.40807 0.90965 0.98353 0.92318 1.24904 0.95084 0.98118 0.95215 1.69995 1.42500 1.32941 1.07061 0.86776 0.79655 0.84619 0.77612 1.20142 1.21650 1.20563 1.22979 1.02480 0.99070 1.00814 1.22512 1.04185 1.03175 0.89928 0.93030 0.93011 0.93429 0.90878 0.92388 0.93522 0.92941 0.91231 0.88605 0.94077 0.89476 0.91543 0.90808 0.91759 0.92189 0.84723 0.90764 0.99203 0.93384 0.92399 0.90593 0.90153 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.96 37.16 0.33 -1.39 16 2 C -0.10 -1.32 2.87 -90.62 -0.26 -1.58 16 3 C -0.15 -1.96 9.19 37.16 0.34 -1.62 16 4 C -0.10 -1.53 4.13 -26.73 -0.11 -1.64 16 5 C 0.11 1.59 2.27 -26.68 -0.06 1.53 16 6 H 0.05 0.66 6.35 -51.93 -0.33 0.33 16 7 O -0.37 -5.58 9.77 -35.23 -0.34 -5.92 16 8 C 0.06 0.77 6.84 37.21 0.25 1.02 16 9 C -0.16 -1.92 5.85 -26.58 -0.16 -2.07 16 10 C -0.15 -2.08 5.61 -26.53 -0.15 -2.23 16 11 C 0.06 0.91 2.36 -67.57 -0.16 0.75 16 12 H 0.08 1.35 7.71 -51.93 -0.40 0.95 16 13 N -0.65 -12.42 5.28 -106.58 -0.56 -12.99 16 14 C 0.11 2.38 5.34 -3.83 -0.02 2.36 16 15 C 0.06 1.35 1.55 -155.66 -0.24 1.11 16 16 C -0.47 -12.64 8.74 -34.44 -0.30 -12.94 16 17 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 18 C 0.07 1.87 5.39 -17.82 -0.10 1.78 16 19 N -0.89 -25.13 12.92 55.43 0.72 -24.42 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.22 -4.74 9.96 -26.69 -0.27 -5.01 16 25 C -0.16 -3.79 9.42 -26.69 -0.25 -4.04 16 26 H 0.05 0.58 6.46 -51.93 -0.34 0.25 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.05 7.70 -51.93 -0.40 0.65 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 1.85 7.71 -51.93 -0.40 1.45 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.02 6.45 -51.93 -0.33 0.68 16 39 H 0.06 0.92 7.52 -51.93 -0.39 0.53 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.33 6.29 6.52 -39.29 -0.26 6.04 16 42 H 0.07 1.83 7.92 -51.93 -0.41 1.42 16 43 H -0.01 -0.21 7.50 -51.93 -0.39 -0.60 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 47 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 48 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -27.64 369.26 -9.90 -37.54 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -9.11 Total: 7.71 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -1.14 Total: -23.97 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.15 Total: -37.40 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.34 Total: -5.92 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.64 -9.90 -37.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602818902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.889 kcal (2) G-P(sol) polarization free energy of solvation -27.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds