Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47357 * 2 1 4 4 C 1.53006 * 109.47176 * 120.00064 * 2 1 3 5 5 C 1.53003 * 109.46941 * 64.99575 * 4 2 1 6 6 H 1.08997 * 109.48818 * 304.97236 * 5 4 2 7 7 O 1.42906 * 109.47775 * 65.00400 * 5 4 2 8 8 C 1.42902 * 114.09796 * 181.13906 * 7 5 4 9 9 C 1.53093 * 109.42340 * 298.83477 * 8 7 5 10 10 C 1.53207 * 109.14959 * 57.60128 * 9 8 7 11 11 C 1.53088 * 109.47685 * 184.94388 * 5 4 2 12 12 H 1.08994 * 109.52247 * 62.43992 * 11 5 4 13 13 N 1.46905 * 109.52324 * 302.31503 * 11 5 4 14 14 C 1.46902 * 111.00051 * 155.00279 * 13 11 5 15 15 C 1.52993 * 109.46981 * 185.40853 * 14 13 11 16 16 C 1.50704 * 115.55241 * 65.05306 * 15 14 13 17 17 H 1.08006 * 119.99591 * 265.33034 * 16 15 14 18 18 C 1.37871 * 119.99966 * 85.32774 * 16 15 14 19 19 N 1.31507 * 120.00568 * 353.48533 * 18 16 15 20 20 Si 1.86806 * 119.99616 * 173.48824 * 18 16 15 21 21 H 1.48498 * 109.47373 * 59.99925 * 20 18 16 22 22 H 1.48508 * 109.46906 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46978 * 299.99612 * 20 18 16 24 24 C 1.52999 * 117.50123 * 279.37990 * 15 14 13 25 25 C 1.52999 * 117.49931 * 210.71892 * 15 14 13 26 26 H 1.08994 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46878 * 300.00200 * 1 2 3 28 28 H 1.09000 * 109.47195 * 59.99634 * 1 2 3 29 29 H 1.09006 * 109.46878 * 239.99800 * 2 1 3 30 30 H 1.09003 * 109.47092 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47217 * 299.99914 * 3 2 1 32 32 H 1.08997 * 109.47527 * 59.99933 * 3 2 1 33 33 H 1.08999 * 109.46756 * 305.00107 * 4 2 1 34 34 H 1.08996 * 109.46649 * 184.99591 * 4 2 1 35 35 H 1.09007 * 109.47699 * 58.82316 * 8 7 5 36 36 H 1.08992 * 109.48286 * 178.84355 * 8 7 5 37 37 H 1.08998 * 109.52097 * 177.51451 * 9 8 7 38 38 H 1.08996 * 109.52341 * 297.70759 * 9 8 7 39 39 H 1.09000 * 109.54314 * 183.15695 * 10 9 8 40 40 H 1.09004 * 109.54028 * 62.89258 * 10 9 8 41 41 H 1.00904 * 110.99951 * 278.95524 * 13 11 5 42 42 H 1.08996 * 109.46716 * 305.41090 * 14 13 11 43 43 H 1.08999 * 109.46777 * 65.40741 * 14 13 11 44 44 H 0.97003 * 120.00630 * 180.02562 * 19 18 16 45 45 H 1.09006 * 117.49849 * 359.97438 * 24 15 14 46 46 H 1.09002 * 117.50538 * 145.02139 * 24 15 14 47 47 H 1.08993 * 117.50410 * 214.98007 * 25 15 14 48 48 H 1.09002 * 117.49864 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1880 6 1 0.5562 -2.2710 1.0533 7 8 2.2979 -2.8264 0.0903 8 6 1.9686 -4.2072 -0.0745 9 6 2.3836 -4.9826 1.1786 10 6 1.6829 -4.3772 2.3992 11 6 2.0367 -2.8898 2.4920 12 1 1.4994 -2.4378 3.3257 13 7 3.4831 -2.7414 2.7019 14 6 3.8207 -2.8382 4.1284 15 6 5.3100 -2.5456 4.3209 16 6 5.7467 -1.1444 3.9790 17 1 6.1406 -0.9260 2.9973 18 6 5.6434 -0.1413 4.9192 19 7 5.0474 -0.3755 6.0678 20 14 6.3502 1.5504 4.5615 21 1 5.6913 2.1179 3.3578 22 1 6.1100 2.4431 5.7238 23 1 7.8106 1.4355 4.3186 24 6 6.2954 -3.6814 4.0384 25 6 6.0231 -3.2447 5.4800 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9564 -0.8900 32 1 1.6768 1.9564 0.8899 33 1 1.6054 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2951 35 1 0.8939 -4.3090 -0.2257 36 1 2.4969 -4.6061 -0.9403 37 1 2.0933 -6.0279 1.0729 38 1 3.4637 -4.9148 1.3079 39 1 2.0169 -4.8884 3.3021 40 1 0.6039 -4.4894 2.2931 41 1 3.9984 -3.4200 2.1615 42 1 3.2323 -2.1134 4.6909 43 1 3.5984 -3.8432 4.4869 44 1 4.9744 0.3304 6.7292 45 1 5.8826 -4.6373 3.7157 46 1 7.2597 -3.4153 3.6055 47 1 6.8084 -2.6914 5.9950 48 1 5.4312 -3.9127 6.1057 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602818902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = -58.827072 kcal Electronic energy + Delta-G solvation = -24032.190653 eV Core-core repulsion = 20893.231515 eV Total energy + Delta-G solvation = -3138.959137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.87038 -38.59237 -37.03469 -35.96777 -33.89285 -33.16519 -31.35608 -28.07174 -27.90339 -27.47114 -25.96193 -24.68620 -23.31180 -22.86136 -20.88062 -20.67138 -20.29557 -18.18755 -17.29099 -16.97217 -16.58355 -16.26236 -15.96219 -15.62538 -15.36784 -15.20458 -14.76534 -14.54776 -14.25159 -14.07527 -13.66560 -13.35010 -13.34197 -13.05222 -12.89344 -12.84275 -12.77857 -12.64617 -12.53061 -12.34457 -12.11424 -12.03447 -11.95286 -11.44012 -11.39551 -11.35087 -11.34440 -10.93919 -10.71341 -10.41679 -10.20205 -9.89347 -8.84955 -8.01713 -6.06748 1.42980 1.43744 1.50505 2.48651 2.96649 3.28377 3.37307 3.66485 3.75759 3.94497 4.01033 4.08029 4.16291 4.20025 4.31326 4.40636 4.46248 4.51608 4.57555 4.62209 4.71809 4.73273 4.77677 4.83691 4.86051 4.90490 4.93459 4.98600 4.99583 5.05961 5.07134 5.10448 5.17201 5.25347 5.27434 5.31402 5.33460 5.46820 5.62867 5.64110 5.69266 5.78200 5.90617 6.40918 6.51668 6.59685 6.83215 6.95623 7.57799 9.07134 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013007 B = 0.006933 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.098611 B = 4037.539895 C = 5630.570587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.093 4.093 5 C 0.116 3.884 6 H 0.072 0.928 7 O -0.388 6.388 8 C 0.058 3.942 9 C -0.151 4.151 10 C -0.147 4.147 11 C 0.052 3.948 12 H 0.065 0.935 13 N -0.659 5.659 14 C 0.128 3.872 15 C 0.029 3.971 16 C -0.475 4.475 17 H 0.044 0.956 18 C 0.026 3.974 19 N -0.911 5.911 20 Si 0.938 3.062 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.189 4.189 25 C -0.166 4.166 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.335 0.665 42 H 0.039 0.961 43 H 0.000 1.000 44 H 0.255 0.745 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.805 -6.301 -11.660 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.130 4.130 5 C 0.058 3.942 6 H 0.089 0.911 7 O -0.307 6.307 8 C -0.018 4.018 9 C -0.189 4.189 10 C -0.187 4.187 11 C -0.058 4.058 12 H 0.083 0.917 13 N -0.290 5.290 14 C -0.001 4.001 15 C 0.028 3.972 16 C -0.513 4.513 17 H 0.062 0.938 18 C -0.173 4.173 19 N -0.550 5.550 20 Si 0.765 3.235 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.227 4.227 25 C -0.204 4.204 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.155 0.845 42 H 0.057 0.943 43 H 0.018 0.982 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.075 0.925 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.740 -5.406 -11.605 16.710 hybrid contribution 0.445 -0.057 0.935 1.037 sum -10.294 -5.463 -10.670 15.801 Atomic orbital electron populations 1.21843 0.94260 1.01836 1.01882 1.21053 0.96431 0.95541 0.97947 1.21823 1.00328 0.96414 1.01738 1.21403 1.01603 0.92711 0.97312 1.22061 0.95029 0.92376 0.84695 0.91067 1.87949 1.69698 1.23628 1.49416 1.22682 1.00416 0.81203 0.97510 1.22146 1.00542 1.00895 0.95334 1.22225 1.01709 0.96118 0.98614 1.22291 0.90052 0.95095 0.98406 0.91665 1.60205 1.04492 1.56518 1.07764 1.21155 0.95912 0.94926 0.88099 1.18935 0.89411 0.91217 0.97599 1.20447 1.40461 0.92768 0.97651 0.93772 1.25493 0.95538 1.01067 0.95225 1.70093 1.43561 1.33682 1.07688 0.85937 0.79038 0.81182 0.77381 1.20061 1.21281 1.20181 1.22948 1.01584 0.99215 0.98913 1.22423 1.03820 1.03488 0.90689 0.92313 0.93002 0.91796 0.91278 0.94232 0.91366 0.93338 0.92536 0.92689 0.92021 0.87894 0.88917 0.92553 0.92709 0.89969 0.84453 0.94287 0.98160 0.93604 0.89589 0.90816 0.92521 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.96 71.98 0.64 -2.35 16 2 C -0.09 -2.43 2.87 -10.79 -0.03 -2.46 16 3 C -0.15 -3.87 9.19 71.98 0.66 -3.21 16 4 C -0.09 -3.01 4.13 30.60 0.13 -2.88 16 5 C 0.12 3.33 2.27 30.62 0.07 3.40 16 6 H 0.07 1.74 6.35 -2.39 -0.02 1.73 16 7 O -0.39 -11.09 9.77 -148.98 -1.45 -12.55 16 8 C 0.06 1.23 6.84 72.01 0.49 1.72 16 9 C -0.15 -3.29 5.85 30.69 0.18 -3.11 16 10 C -0.15 -3.66 5.61 30.72 0.17 -3.49 16 11 C 0.05 1.65 2.36 45.00 0.11 1.76 16 12 H 0.07 2.23 7.71 -2.39 -0.02 2.21 16 13 N -0.66 -25.45 5.28 -491.12 -2.59 -28.04 16 14 C 0.13 5.73 5.34 86.30 0.46 6.19 16 15 C 0.03 1.43 1.55 -52.93 -0.08 1.35 16 16 C -0.48 -26.43 8.74 25.60 0.22 -26.20 16 17 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16 18 C 0.03 1.44 5.39 84.65 0.46 1.90 16 19 N -0.91 -52.96 12.92 21.44 0.28 -52.68 16 20 Si 0.94 45.08 29.54 68.60 2.03 47.10 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 C -0.19 -8.15 9.96 30.62 0.30 -7.85 16 25 C -0.17 -7.92 9.42 30.62 0.29 -7.63 16 26 H 0.06 1.16 6.46 -2.39 -0.02 1.14 16 27 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.91 7.70 -2.38 -0.02 1.89 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 2.22 7.71 -2.39 -0.02 2.20 16 35 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.44 6.45 -2.39 -0.02 1.42 16 39 H 0.05 1.47 7.52 -2.39 -0.02 1.45 16 40 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.34 12.59 6.52 -89.69 -0.58 12.00 16 42 H 0.04 1.99 7.92 -2.39 -0.02 1.98 16 43 H 0.00 0.02 7.50 -2.39 -0.02 0.00 16 44 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 45 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 46 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 48 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -60.62 369.26 2.65 -57.97 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.31 Total: 31.06 kcal Atomic # 6 Polarization: -46.95 SS G_CDS: 4.07 Total: -42.87 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -2.31 Total: -80.72 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -1.45 Total: -12.55 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -60.62 2.65 -57.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602818902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.855 kcal (2) G-P(sol) polarization free energy of solvation -60.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds