Wall clock time and date at job start Tue Mar 31 2020 05:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47061 * 2 1 4 4 C 1.53004 * 109.47020 * 175.43358 * 3 2 1 5 5 C 1.52999 * 110.01086 * 305.84367 * 4 3 2 6 6 O 1.42894 * 109.47126 * 177.26632 * 5 4 3 7 7 C 1.42897 * 114.00205 * 179.97438 * 6 5 4 8 8 C 1.54316 * 109.88745 * 66.95655 * 4 3 2 9 9 C 1.55145 * 103.01794 * 97.12093 * 8 4 3 10 10 C 1.54905 * 101.65065 * 35.65375 * 9 8 4 11 11 N 1.47438 * 109.88571 * 184.72649 * 4 3 2 12 12 C 1.46897 * 111.00024 * 117.33929 * 11 4 3 13 13 C 1.53002 * 109.47378 * 194.99854 * 12 11 4 14 14 C 1.50701 * 115.54622 * 34.33012 * 13 12 11 15 15 H 1.07996 * 120.00389 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99928 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99931 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00143 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47413 * 89.99889 * 18 16 14 20 20 H 1.48495 * 109.47042 * 210.00058 * 18 16 14 21 21 H 1.48503 * 109.46735 * 329.99792 * 18 16 14 22 22 C 1.52995 * 117.50274 * 248.61925 * 13 12 11 23 23 C 1.53001 * 60.00302 * 252.51078 * 22 13 12 24 24 H 1.09002 * 109.47514 * 59.99876 * 1 2 3 25 25 H 1.09000 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47355 * 299.99495 * 1 2 3 27 27 H 1.09005 * 109.47082 * 240.00086 * 2 1 3 28 28 H 1.08993 * 109.47232 * 120.00092 * 2 1 3 29 29 H 1.08998 * 109.46939 * 55.43504 * 3 2 1 30 30 H 1.08994 * 109.47551 * 295.43519 * 3 2 1 31 31 H 1.09007 * 109.46961 * 297.26497 * 5 4 3 32 32 H 1.08998 * 109.47113 * 57.26332 * 5 4 3 33 33 H 1.09001 * 109.46937 * 299.99901 * 7 6 5 34 34 H 1.09001 * 109.47595 * 59.99717 * 7 6 5 35 35 H 1.09000 * 109.47592 * 179.97438 * 7 6 5 36 36 H 1.08993 * 110.70586 * 215.50205 * 8 4 3 37 37 H 1.09001 * 110.70757 * 338.74300 * 8 4 3 38 38 H 1.09001 * 110.98922 * 277.56095 * 9 8 4 39 39 H 1.09000 * 110.98866 * 153.74176 * 9 8 4 40 40 H 1.09001 * 110.37286 * 204.09900 * 10 9 8 41 41 H 1.09002 * 110.37428 * 81.76414 * 10 9 8 42 42 H 1.09005 * 109.47382 * 315.00252 * 12 11 4 43 43 H 1.08997 * 109.47401 * 75.00026 * 12 11 4 44 44 H 0.97003 * 119.99660 * 180.02562 * 17 16 14 45 45 H 1.09001 * 117.49524 * 0.02562 * 22 13 12 46 46 H 1.08999 * 117.49825 * 145.02000 * 22 13 12 47 47 H 1.08998 * 117.49743 * 252.51149 * 23 22 13 48 48 H 1.08996 * 117.49645 * 107.48470 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5657 1.4440 0.1148 5 6 3.9994 0.6339 1.3381 6 8 5.4264 0.5896 1.3985 7 6 5.9385 -0.1468 2.5109 8 6 4.1888 0.8413 -1.1618 9 6 4.5467 2.0956 -2.0017 10 6 4.9727 3.0984 -0.9006 11 7 4.0586 2.8288 0.2297 12 6 4.7350 3.0418 1.5161 13 6 4.8982 4.5428 1.7643 14 6 3.7818 5.4123 1.2459 15 1 2.9398 4.9649 0.7387 16 6 3.8348 6.7790 1.4202 17 7 4.8593 7.3237 2.0392 18 14 2.4506 7.8568 0.7784 19 1 1.4153 8.0123 1.8315 20 1 2.9906 9.1913 0.4142 21 1 1.8457 7.2235 -0.4209 22 6 6.3165 5.1153 1.7252 23 6 5.5852 4.9738 3.0617 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6113 1.9794 0.8463 30 1 1.7450 1.9322 -0.9280 31 1 3.6120 1.1048 2.2417 32 1 3.6073 -0.3801 1.2601 33 1 5.5913 0.3082 3.4386 34 1 5.5867 -1.1771 2.4578 35 1 7.0281 -0.1335 2.4849 36 1 5.0854 0.2704 -0.9205 37 1 3.4644 0.2193 -1.6876 38 1 3.6769 2.4613 -2.5475 39 1 5.3731 1.8877 -2.6813 40 1 4.8497 4.1228 -1.2520 41 1 6.0062 2.9197 -0.6038 42 1 4.1392 2.6038 2.3170 43 1 5.7167 2.5686 1.4932 44 1 4.8964 8.2852 2.1622 45 1 7.1333 4.4227 1.5223 46 1 6.4424 6.1210 1.3244 47 1 5.2299 5.8865 3.5401 48 1 5.9209 4.1881 3.7384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602820525.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:43 Heat of formation + Delta-G solvation = -3.396092 kcal Electronic energy + Delta-G solvation = -24586.993498 eV Core-core repulsion = 21450.438028 eV Total energy + Delta-G solvation = -3136.555470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.96087 -36.87786 -36.27820 -34.44552 -31.70817 -30.82744 -30.17519 -27.12221 -25.73009 -25.34344 -24.54007 -24.22636 -21.85546 -20.59843 -20.30182 -18.75908 -18.34111 -16.40349 -16.08364 -15.85013 -15.40759 -14.80883 -14.52416 -14.29992 -14.15112 -13.66492 -13.43493 -13.18604 -12.70299 -12.42111 -12.21536 -12.16353 -11.78031 -11.67066 -11.31309 -11.25675 -10.98128 -10.87572 -10.86431 -10.70324 -10.52044 -10.40619 -10.33508 -10.13850 -9.95496 -9.90380 -9.81116 -9.40788 -9.16150 -8.54361 -8.12979 -7.82266 -7.25994 -5.74859 -3.75676 3.39756 3.46649 3.51474 3.92508 4.49959 4.57253 4.92862 5.12531 5.14325 5.23042 5.26393 5.31846 5.35921 5.37940 5.45643 5.54914 5.66566 5.70741 5.74597 5.83683 5.87520 5.93053 5.99946 6.05848 6.10055 6.17109 6.23179 6.28748 6.38620 6.48450 6.51513 6.65309 6.66849 6.74606 6.82274 6.90339 6.96020 7.21521 7.33652 7.37499 7.49664 7.84000 7.93421 8.11772 8.28457 8.39049 8.81947 9.25969 9.77847 11.21789 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.006688 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.015675 B = 4185.723750 C = 5042.308351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.093 4.093 4 C 0.102 3.898 5 C 0.046 3.954 6 O -0.379 6.379 7 C 0.031 3.969 8 C -0.129 4.129 9 C -0.131 4.131 10 C 0.061 3.939 11 N -0.490 5.490 12 C 0.094 3.906 13 C 0.024 3.976 14 C -0.441 4.441 15 H 0.074 0.926 16 C 0.048 3.952 17 N -0.889 5.889 18 Si 0.891 3.109 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.274 1.274 22 C -0.191 4.191 23 C -0.192 4.192 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.034 0.966 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.039 0.961 42 H 0.052 0.948 43 H 0.042 0.958 44 H 0.253 0.747 45 H 0.035 0.965 46 H 0.106 0.894 47 H 0.108 0.892 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.472 -15.624 -3.540 16.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.131 4.131 4 C 0.012 3.988 5 C -0.031 4.031 6 O -0.298 6.298 7 C -0.066 4.066 8 C -0.167 4.167 9 C -0.169 4.169 10 C -0.067 4.067 11 N -0.213 5.213 12 C -0.033 4.033 13 C 0.023 3.977 14 C -0.479 4.479 15 H 0.092 0.908 16 C -0.151 4.151 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.199 1.199 22 C -0.229 4.229 23 C -0.231 4.231 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.124 0.876 47 H 0.126 0.874 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.721 -14.987 -3.642 15.661 hybrid contribution 0.001 0.021 0.180 0.182 sum -2.719 -14.966 -3.462 15.600 Atomic orbital electron populations 1.21759 0.96055 1.00972 1.02011 1.21726 0.95686 0.97708 1.01616 1.21477 0.93058 0.95281 1.03325 1.21825 0.95208 0.89148 0.92606 1.23232 0.81279 0.98961 0.99647 1.88008 1.20761 1.73663 1.47335 1.22673 0.99706 0.94555 0.89644 1.22819 1.00530 0.97755 0.95637 1.22710 1.00766 0.95682 0.97714 1.22875 0.94352 0.99476 0.89966 1.63480 1.36667 1.18212 1.02915 1.22020 0.95705 0.96260 0.89284 1.19059 0.91818 0.89885 0.96912 1.20707 1.04283 0.89723 1.33168 0.90821 1.25070 0.95829 0.98294 0.95922 1.70042 1.29336 1.10483 1.43062 0.86606 0.82457 0.79765 0.79188 1.21158 1.21754 1.19926 1.22821 0.95101 1.02404 1.02561 1.22779 1.07301 1.02031 0.90972 0.92770 0.93296 0.92666 0.92155 0.92220 0.91140 0.91120 0.92220 0.93462 0.94110 0.94725 0.90024 0.91073 0.91633 0.91337 0.91863 0.89956 0.94280 0.92959 0.94059 0.93649 0.94665 0.87577 0.87377 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.13 -1.45 5.34 -26.73 -0.14 -1.59 16 3 C -0.09 -1.32 4.58 -26.73 -0.12 -1.45 16 4 C 0.10 1.59 0.72 -130.62 -0.09 1.50 16 5 C 0.05 0.67 3.70 37.16 0.14 0.81 16 6 O -0.38 -5.90 6.87 -35.23 -0.24 -6.14 16 7 C 0.03 0.38 11.01 101.05 1.11 1.49 16 8 C -0.13 -1.81 5.73 -24.91 -0.14 -1.95 16 9 C -0.13 -1.95 7.08 -24.59 -0.17 -2.12 16 10 C 0.06 1.15 6.32 -2.30 -0.01 1.13 16 11 N -0.49 -9.52 3.59 -215.75 -0.77 -10.29 16 12 C 0.09 2.02 3.65 -3.82 -0.01 2.00 16 13 C 0.02 0.61 2.11 -155.66 -0.33 0.28 16 14 C -0.44 -12.08 8.69 -34.44 -0.30 -12.38 16 15 H 0.07 2.03 7.22 -52.49 -0.38 1.66 16 16 C 0.05 1.33 5.28 -17.82 -0.09 1.24 16 17 N -0.89 -25.43 8.59 55.43 0.48 -24.95 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.75 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.19 -4.93 9.31 -26.73 -0.25 -5.17 16 23 C -0.19 -4.96 9.38 -26.73 -0.25 -5.21 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.63 6.64 -51.93 -0.34 0.29 16 28 H 0.06 0.65 6.05 -51.93 -0.31 0.33 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.94 6.14 -51.92 -0.32 0.62 16 32 H 0.05 0.60 6.13 -51.93 -0.32 0.28 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.04 7.08 -51.93 -0.37 0.67 16 37 H 0.07 0.80 6.28 -51.93 -0.33 0.48 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.04 0.77 7.54 -51.93 -0.39 0.38 16 42 H 0.05 1.11 5.67 -51.93 -0.29 0.81 16 43 H 0.04 0.90 5.48 -51.93 -0.28 0.61 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.03 0.85 8.05 -51.93 -0.42 0.43 16 46 H 0.11 3.02 6.29 -51.93 -0.33 2.69 16 47 H 0.11 3.07 6.28 -51.93 -0.33 2.74 16 48 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 353.57 15.07 5.33 5.33 Total: -1.00 -28.83 353.57 -9.16 -37.99 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -8.62 Total: 3.91 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -0.31 Total: -22.59 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.30 Total: -35.25 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.24 Total: -6.14 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.83 -9.16 -37.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602820525.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.594 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds