Wall clock time and date at job start Tue Mar 31 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47142 * 2 1 4 4 C 1.53004 * 109.46841 * 182.51498 * 3 2 1 5 5 C 1.52996 * 110.06861 * 56.36404 * 4 3 2 6 6 O 1.42901 * 109.47580 * 181.78159 * 5 4 3 7 7 C 1.42893 * 114.00422 * 179.97438 * 6 5 4 8 8 C 1.53990 * 109.91584 * 295.15434 * 4 3 2 9 9 C 1.54598 * 105.13825 * 239.42314 * 8 4 3 10 10 C 1.54929 * 102.92383 * 338.04392 * 9 8 4 11 11 N 1.47903 * 109.91235 * 177.56612 * 4 3 2 12 12 C 1.46904 * 111.00100 * 265.19426 * 11 4 3 13 13 C 1.52999 * 109.47186 * 176.06013 * 12 11 4 14 14 C 1.50701 * 115.54851 * 303.49910 * 13 12 11 15 15 H 1.08004 * 119.99969 * 359.88340 * 14 13 12 16 16 C 1.37874 * 119.99985 * 180.15069 * 14 13 12 17 17 N 1.31520 * 120.00135 * 359.72861 * 16 14 13 18 18 Si 1.86804 * 120.00145 * 179.72293 * 16 14 13 19 19 H 1.48507 * 109.46776 * 90.00253 * 18 16 14 20 20 H 1.48497 * 109.47351 * 209.99976 * 18 16 14 21 21 H 1.48494 * 109.46979 * 330.00466 * 18 16 14 22 22 C 1.53003 * 117.49832 * 89.16741 * 13 12 11 23 23 C 1.52997 * 117.49781 * 157.83113 * 13 12 11 24 24 H 1.08994 * 109.47030 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46594 * 299.99997 * 1 2 3 26 26 H 1.08997 * 109.47147 * 59.99605 * 1 2 3 27 27 H 1.09007 * 109.46957 * 240.00400 * 2 1 3 28 28 H 1.08994 * 109.47589 * 120.00142 * 2 1 3 29 29 H 1.08991 * 109.46890 * 62.51614 * 3 2 1 30 30 H 1.09002 * 109.46963 * 302.51368 * 3 2 1 31 31 H 1.09002 * 109.47172 * 301.78008 * 5 4 3 32 32 H 1.08999 * 109.47591 * 61.77765 * 5 4 3 33 33 H 1.09007 * 109.46962 * 59.99802 * 7 6 5 34 34 H 1.08995 * 109.47301 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47362 * 300.00480 * 7 6 5 36 36 H 1.09004 * 110.30499 * 120.51169 * 8 4 3 37 37 H 1.08996 * 110.31205 * 358.34357 * 8 4 3 38 38 H 1.09007 * 110.72119 * 219.68440 * 9 8 4 39 39 H 1.08999 * 110.72110 * 96.40428 * 9 8 4 40 40 H 1.09004 * 110.66971 * 278.98157 * 10 9 8 41 41 H 1.08998 * 110.81009 * 155.91420 * 10 9 8 42 42 H 1.08997 * 109.47220 * 56.05688 * 12 11 4 43 43 H 1.09002 * 109.47052 * 296.05897 * 12 11 4 44 44 H 0.96997 * 120.00290 * 179.97438 * 17 16 14 45 45 H 1.08995 * 117.49693 * 214.99951 * 22 13 12 46 46 H 1.08997 * 117.49926 * 0.02851 * 22 13 12 47 47 H 1.09000 * 117.50105 * 359.97131 * 23 13 12 48 48 H 1.09004 * 117.49834 * 144.97572 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5688 1.4429 -0.0633 5 6 4.0435 0.6646 -1.2920 6 8 5.4721 0.6377 -1.3162 7 6 6.0214 -0.0694 -2.4298 8 6 4.1469 0.8085 1.2152 9 6 5.0249 1.9106 1.8513 10 6 5.3376 2.8399 0.6517 11 7 4.0701 2.8331 -0.1228 12 6 4.3001 3.2508 -1.5123 13 6 4.7228 4.7210 -1.5396 14 6 3.7641 5.6851 -0.8895 15 1 2.8489 5.3206 -0.4468 16 6 4.0528 7.0330 -0.8647 17 7 5.1674 7.4769 -1.4036 18 14 2.8609 8.2290 -0.0656 19 1 3.2026 8.3825 1.3714 20 1 2.9562 9.5482 -0.7407 21 1 1.4765 7.7069 -0.1922 22 6 6.2175 5.0285 -1.4291 23 6 5.4947 5.2114 -2.7661 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.7140 1.9431 0.9116 30 1 1.6404 1.9692 -0.8666 31 1 3.6617 -0.3553 -1.2459 32 1 3.6740 1.1504 -2.1950 33 1 5.6928 0.4009 -3.3567 34 1 7.1097 -0.0444 -2.3751 35 1 5.6805 -1.1045 -2.4070 36 1 4.7541 -0.0613 0.9647 37 1 3.3426 0.5265 1.8946 38 1 5.9421 1.4855 2.2592 39 1 4.4717 2.4479 2.6216 40 1 6.1553 2.4359 0.0549 41 1 5.5739 3.8475 0.9938 42 1 3.3817 3.1261 -2.0859 43 1 5.0880 2.6380 -1.9503 44 1 5.3704 8.4252 -1.3865 45 1 6.5075 5.9281 -0.8863 46 1 6.8997 4.1834 -1.3375 47 1 5.7019 4.4866 -3.5534 48 1 5.3090 6.2313 -3.1030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602820527.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:45 Heat of formation + Delta-G solvation = -13.032558 kcal Electronic energy + Delta-G solvation = -24556.388451 eV Core-core repulsion = 21419.415112 eV Total energy + Delta-G solvation = -3136.973338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.94688 -36.87342 -36.27096 -34.45157 -31.79768 -30.84847 -30.08212 -27.17706 -25.90689 -25.25110 -24.58408 -24.24443 -21.79602 -20.69739 -20.19346 -18.76495 -18.35794 -16.44929 -16.04042 -15.85214 -15.43392 -14.86360 -14.62946 -14.35022 -14.12445 -13.59266 -13.41105 -12.97944 -12.91352 -12.46142 -12.26851 -12.22559 -11.87079 -11.59139 -11.32410 -11.19970 -11.01664 -10.91860 -10.88965 -10.69891 -10.47422 -10.46648 -10.31730 -10.06327 -10.03054 -9.95510 -9.81029 -9.49640 -9.21305 -8.66442 -8.14901 -7.88117 -7.41910 -5.79316 -3.81121 3.38352 3.44849 3.49002 3.88976 4.51654 4.53699 4.94571 5.11919 5.14434 5.21409 5.22861 5.33535 5.35447 5.37164 5.43845 5.52769 5.66188 5.70392 5.71907 5.81657 5.89826 5.93630 5.98283 6.04279 6.11751 6.19035 6.26023 6.32666 6.33878 6.46368 6.47109 6.59762 6.60717 6.70740 6.80286 6.88374 6.90090 7.19175 7.32071 7.34336 7.48966 7.79215 7.84861 8.03321 8.22708 8.36545 8.73389 9.17009 9.72269 11.17108 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.006372 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.450676 B = 4392.830518 C = 5218.425308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.093 4.093 4 C 0.094 3.906 5 C 0.040 3.960 6 O -0.377 6.377 7 C 0.031 3.969 8 C -0.113 4.113 9 C -0.123 4.123 10 C 0.053 3.947 11 N -0.479 5.479 12 C 0.091 3.909 13 C 0.027 3.973 14 C -0.446 4.446 15 H 0.065 0.935 16 C 0.051 3.949 17 N -0.887 5.887 18 Si 0.893 3.107 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.275 1.275 22 C -0.186 4.186 23 C -0.192 4.192 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.034 0.966 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.031 0.969 44 H 0.255 0.745 45 H 0.106 0.894 46 H 0.037 0.963 47 H 0.035 0.965 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 -15.949 1.803 16.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.131 4.131 4 C 0.004 3.996 5 C -0.037 4.037 6 O -0.296 6.296 7 C -0.065 4.065 8 C -0.151 4.151 9 C -0.161 4.161 10 C -0.074 4.074 11 N -0.201 5.201 12 C -0.036 4.036 13 C 0.026 3.974 14 C -0.484 4.484 15 H 0.083 0.917 16 C -0.148 4.148 17 N -0.526 5.526 18 Si 0.722 3.278 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.201 1.201 22 C -0.224 4.224 23 C -0.231 4.231 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.125 0.875 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.860 -15.296 2.131 15.706 hybrid contribution -0.002 0.021 -0.423 0.423 sum -2.862 -15.275 1.708 15.635 Atomic orbital electron populations 1.21760 0.96022 1.01022 1.02010 1.21683 0.95689 0.97546 1.01691 1.21469 0.92772 0.95506 1.03387 1.21921 0.95083 0.89782 0.92836 1.23333 0.81282 0.99232 0.99893 1.87982 1.20144 1.75367 1.46074 1.22679 0.99340 0.94947 0.89577 1.22385 0.98801 0.98184 0.95712 1.22454 0.98729 0.96585 0.98323 1.23081 0.91425 0.99703 0.93237 1.64734 1.25750 1.16524 1.13126 1.21836 0.98061 0.95992 0.87736 1.18925 0.90678 0.90004 0.97768 1.20590 1.04513 0.89892 1.33397 0.91692 1.25025 0.95460 0.98421 0.95926 1.70032 1.23574 1.13748 1.45282 0.86576 0.81580 0.80351 0.79327 1.20946 1.21663 1.20052 1.22788 0.96559 1.01090 1.01944 1.22818 1.08246 1.01864 0.90167 0.93242 0.92690 0.92738 0.92348 0.92009 0.90671 0.91613 0.93556 0.92847 0.94280 0.89976 0.94710 0.91772 0.91776 0.92163 0.91487 0.93499 0.89807 0.92944 0.95111 0.93513 0.87543 0.94441 0.94619 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.13 -1.42 5.34 -26.73 -0.14 -1.56 16 3 C -0.09 -1.32 4.45 -26.73 -0.12 -1.43 16 4 C 0.09 1.46 0.57 -130.53 -0.07 1.39 16 5 C 0.04 0.59 3.53 37.16 0.13 0.72 16 6 O -0.38 -5.85 6.66 -35.23 -0.23 -6.09 16 7 C 0.03 0.38 11.01 101.05 1.11 1.50 16 8 C -0.11 -1.59 5.41 -25.37 -0.14 -1.73 16 9 C -0.12 -1.90 7.06 -24.87 -0.18 -2.08 16 10 C 0.05 1.01 4.86 -1.90 -0.01 1.00 16 11 N -0.48 -9.32 4.63 -215.00 -1.00 -10.31 16 12 C 0.09 1.95 3.42 -3.82 -0.01 1.93 16 13 C 0.03 0.68 1.86 -155.66 -0.29 0.39 16 14 C -0.45 -12.30 8.92 -34.44 -0.31 -12.61 16 15 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 16 C 0.05 1.42 5.27 -17.82 -0.09 1.33 16 17 N -0.89 -25.19 8.59 55.43 0.48 -24.72 16 18 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.19 -4.73 8.24 -26.69 -0.22 -4.95 16 23 C -0.19 -4.93 9.38 -26.69 -0.25 -5.18 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.63 6.23 -51.92 -0.32 0.30 16 28 H 0.06 0.65 6.89 -51.93 -0.36 0.29 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.58 6.27 -51.93 -0.33 0.26 16 32 H 0.05 0.83 6.42 -51.93 -0.33 0.49 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.88 7.35 -51.93 -0.38 0.50 16 37 H 0.06 0.81 6.75 -51.93 -0.35 0.46 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.93 6.52 -51.93 -0.34 0.59 16 41 H 0.08 1.82 7.73 -51.93 -0.40 1.41 16 42 H 0.05 1.12 7.52 -51.93 -0.39 0.73 16 43 H 0.03 0.65 5.51 -51.93 -0.29 0.37 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.11 3.00 6.29 -51.93 -0.33 2.67 16 46 H 0.04 0.89 7.90 -51.93 -0.41 0.48 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.11 3.05 6.28 -51.93 -0.33 2.73 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -28.67 353.35 -9.42 -38.09 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.75 Total: 3.40 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -0.22 Total: -22.42 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: -0.52 Total: -35.03 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.23 Total: -6.09 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.67 -9.42 -38.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602820527.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.060 kcal (2) G-P(sol) polarization free energy of solvation -28.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds