Wall clock time and date at job start Tue Mar 31 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46981 * 2 1 4 4 C 1.52996 * 109.47307 * 120.00675 * 2 1 3 5 5 C 1.53003 * 109.54060 * 59.89844 * 4 2 1 6 6 O 1.42898 * 109.46965 * 56.59880 * 5 4 2 7 7 C 1.53124 * 109.49963 * 299.80346 * 4 2 1 8 8 C 1.53127 * 109.15731 * 182.40716 * 7 4 2 9 9 C 1.53033 * 109.27730 * 57.65368 * 8 7 4 10 10 N 1.46842 * 109.52523 * 300.81575 * 9 8 7 11 11 C 1.46900 * 111.00068 * 185.84241 * 10 9 8 12 12 C 1.52997 * 109.46879 * 52.14795 * 11 10 9 13 13 C 1.50702 * 115.55577 * 53.98041 * 12 11 10 14 14 H 1.07991 * 119.99992 * 220.06932 * 13 12 11 15 15 C 1.37876 * 119.99528 * 39.78681 * 13 12 11 16 16 N 1.31513 * 120.00484 * 8.87989 * 15 13 12 17 17 Si 1.86806 * 119.99758 * 188.87431 * 15 13 12 18 18 H 1.48496 * 109.46816 * 65.00118 * 17 15 13 19 19 H 1.48494 * 109.47139 * 185.00099 * 17 15 13 20 20 H 1.48497 * 109.46822 * 305.00232 * 17 15 13 21 21 C 1.53003 * 117.51555 * 199.67789 * 12 11 10 22 22 C 1.52998 * 117.49824 * 268.30668 * 12 11 10 23 23 C 1.46851 * 111.19624 * 61.74579 * 10 9 8 24 24 H 1.08995 * 109.47196 * 59.99807 * 1 2 3 25 25 H 1.09007 * 109.46891 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46922 * 299.99116 * 1 2 3 27 27 H 1.09008 * 109.46898 * 240.00489 * 2 1 3 28 28 H 1.08999 * 109.46683 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47313 * 300.00121 * 3 2 1 30 30 H 1.09008 * 109.46906 * 60.00493 * 3 2 1 31 31 H 1.08997 * 109.47372 * 176.60084 * 5 4 2 32 32 H 1.09002 * 109.46738 * 296.60494 * 5 4 2 33 33 H 0.96697 * 114.00391 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.52064 * 302.30920 * 7 4 2 35 35 H 1.08997 * 109.52714 * 62.50002 * 7 4 2 36 36 H 1.09003 * 109.49701 * 177.59327 * 8 7 4 37 37 H 1.08994 * 109.50134 * 297.70676 * 8 7 4 38 38 H 1.09004 * 109.46050 * 180.80422 * 9 8 7 39 39 H 1.08995 * 109.46402 * 60.83814 * 9 8 7 40 40 H 1.08999 * 109.47456 * 292.14323 * 11 10 9 41 41 H 1.09004 * 109.46885 * 172.14365 * 11 10 9 42 42 H 0.96999 * 120.00311 * 184.98738 * 16 15 13 43 43 H 1.09005 * 117.50136 * 214.96941 * 21 12 11 44 44 H 1.09005 * 117.49920 * 359.97438 * 21 12 11 45 45 H 1.09003 * 117.49720 * 359.97438 * 22 12 11 46 46 H 1.08990 * 117.50257 * 145.00156 * 22 12 11 47 47 H 1.08995 * 109.46202 * 58.27370 * 23 10 9 48 48 H 1.09006 * 109.46091 * 178.24515 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.5289 -2.1635 1.2518 6 8 1.9368 -2.8157 0.0476 7 6 1.5341 0.0027 2.4999 8 6 2.0979 -0.6896 3.7439 9 6 3.6266 -0.6909 3.6722 10 7 4.0604 -1.3955 2.4592 11 6 5.5222 -1.5374 2.4271 12 6 6.0031 -2.1595 3.7395 13 6 5.3455 -3.4605 4.1216 14 1 5.0832 -3.6509 5.1517 15 6 5.0735 -4.4053 3.1550 16 7 5.5407 -4.2517 1.9353 17 14 4.0414 -5.9038 3.5779 18 1 2.6627 -5.4737 3.9234 19 1 3.9961 -6.8195 2.4098 20 1 4.6449 -6.6094 4.7369 21 6 7.4763 -1.9771 4.1102 22 6 6.3950 -1.2071 4.8709 23 6 3.5704 -0.7218 1.2498 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.9417 -2.6937 2.1100 32 1 0.4406 -2.1630 1.3140 33 1 1.6466 -3.7357 -0.0192 34 1 1.8657 1.0408 2.4790 35 1 0.4450 -0.0324 2.5256 36 1 1.7759 -0.1530 4.6363 37 1 1.7346 -1.7164 3.7850 38 1 4.0309 -1.1958 4.5496 39 1 3.9898 0.3364 3.6451 40 1 5.9799 -0.5562 2.3009 41 1 5.8066 -2.1807 1.5943 42 1 5.2902 -4.8773 1.2376 43 1 7.9698 -2.7981 4.6305 44 1 8.1033 -1.4141 3.4188 45 1 6.3106 -0.1372 4.6801 46 1 6.1771 -1.5214 5.8916 47 1 3.9339 0.3057 1.2340 48 1 3.9338 -1.2491 0.3678 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602833519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:50 Heat of formation + Delta-G solvation = -29.213474 kcal Electronic energy + Delta-G solvation = -25032.397051 eV Core-core repulsion = 21894.722055 eV Total energy + Delta-G solvation = -3137.674995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.78885 -37.13932 -35.42341 -34.53949 -31.99172 -31.75581 -29.50551 -27.56540 -25.93836 -25.29316 -24.76851 -22.57523 -22.24979 -21.04033 -20.03724 -18.75112 -17.51336 -16.69650 -16.11345 -15.25427 -14.65852 -14.57212 -14.46077 -14.34187 -13.87868 -13.52117 -13.22426 -12.87543 -12.60446 -12.55763 -12.32805 -12.16460 -11.90995 -11.62848 -11.40608 -11.29904 -11.15091 -10.85272 -10.73175 -10.67299 -10.51750 -10.39236 -10.23494 -10.01871 -9.80396 -9.72387 -9.52745 -9.24564 -9.06287 -8.92266 -8.46996 -7.89611 -7.00799 -5.84117 -3.86114 3.37640 3.42289 3.45661 4.52990 4.63839 4.91199 5.03730 5.05004 5.20933 5.32054 5.42124 5.46059 5.62086 5.69663 5.75055 5.75513 5.85699 5.94210 6.00016 6.04759 6.10068 6.12886 6.18191 6.24421 6.25892 6.31431 6.32296 6.39734 6.47664 6.52800 6.64009 6.66631 6.68927 6.73932 6.79292 6.86548 6.90287 7.00470 7.03005 7.29316 7.41701 7.72529 8.10434 8.18717 8.31381 8.37059 8.62878 9.07019 9.74043 11.20009 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017059 B = 0.007483 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.998481 B = 3740.945153 C = 4527.087913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.150 4.150 4 C -0.040 4.040 5 C 0.093 3.907 6 O -0.565 6.565 7 C -0.111 4.111 8 C -0.120 4.120 9 C 0.058 3.942 10 N -0.495 5.495 11 C 0.105 3.895 12 C 0.067 3.933 13 C -0.478 4.478 14 H 0.051 0.949 15 C 0.092 3.908 16 N -0.866 5.866 17 Si 0.882 3.118 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.282 1.282 21 C -0.204 4.204 22 C -0.219 4.219 23 C 0.073 3.927 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.026 0.974 33 H 0.370 0.630 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.006 0.994 40 H -0.018 1.018 41 H 0.113 0.887 42 H 0.258 0.742 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.015 0.985 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.015 7.785 -2.698 12.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.208 4.208 4 C -0.041 4.041 5 C 0.015 3.985 6 O -0.369 6.369 7 C -0.148 4.148 8 C -0.157 4.157 9 C -0.071 4.071 10 N -0.218 5.218 11 C -0.022 4.022 12 C 0.067 3.933 13 C -0.515 4.515 14 H 0.070 0.930 15 C -0.112 4.112 16 N -0.502 5.502 17 Si 0.711 3.289 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.208 1.208 21 C -0.243 4.243 22 C -0.256 4.256 23 C -0.055 4.055 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.215 0.785 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.024 0.976 40 H 0.000 1.000 41 H 0.131 0.869 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.033 0.967 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.884 7.776 -2.981 12.177 hybrid contribution -0.439 -0.419 0.396 0.724 sum -9.324 7.358 -2.586 12.155 Atomic orbital electron populations 1.21888 0.95931 1.01503 1.00906 1.21016 0.95065 0.95385 0.98665 1.21967 1.01358 0.96462 1.00963 1.20506 0.96015 0.93525 0.94005 1.22175 0.95305 0.93055 0.87924 1.86417 1.80746 1.28791 1.40978 1.21716 0.99522 0.99079 0.94512 1.21667 0.96838 1.00948 0.96290 1.22109 0.93728 0.94917 0.96311 1.61637 1.12653 1.48154 0.99377 1.21691 0.84453 0.94831 1.01206 1.18938 0.90996 0.93697 0.89710 1.20177 1.39540 0.98184 0.93648 0.93035 1.24673 0.94525 0.96919 0.95057 1.69807 1.41822 1.37013 1.01606 0.86849 0.81449 0.83166 0.77485 1.20481 1.21596 1.20776 1.22959 0.95012 1.02052 1.04269 1.22959 1.08589 0.95936 0.98130 1.22005 0.92917 0.95443 0.95167 0.93433 0.92650 0.92892 0.90480 0.92469 0.93404 0.92775 0.91288 0.95595 0.78478 0.91974 0.92421 0.92724 0.91183 0.88872 0.97556 1.00043 0.86934 0.93136 0.90519 0.92104 0.91995 0.90898 0.96693 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.49 37.16 0.32 -1.42 16 2 C -0.08 -1.14 2.10 -90.62 -0.19 -1.33 16 3 C -0.15 -1.89 8.49 37.16 0.32 -1.57 16 4 C -0.04 -0.63 0.15 -154.43 -0.02 -0.65 16 5 C 0.09 1.54 4.97 37.16 0.18 1.73 16 6 O -0.57 -9.63 12.31 -35.23 -0.43 -10.06 16 7 C -0.11 -1.60 4.07 -26.60 -0.11 -1.71 16 8 C -0.12 -1.95 5.74 -26.65 -0.15 -2.10 16 9 C 0.06 1.11 4.75 -3.84 -0.02 1.09 16 10 N -0.50 -10.41 3.66 -234.68 -0.86 -11.27 16 11 C 0.11 2.46 4.33 -3.83 -0.02 2.45 16 12 C 0.07 1.63 1.00 -155.66 -0.16 1.48 16 13 C -0.48 -12.66 8.17 -34.44 -0.28 -12.95 16 14 H 0.05 1.39 7.83 -52.49 -0.41 0.98 16 15 C 0.09 2.44 5.27 -17.82 -0.09 2.35 16 16 N -0.87 -23.51 10.92 55.43 0.61 -22.90 16 17 Si 0.88 20.86 29.55 -169.99 -5.02 15.84 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 C -0.20 -4.71 9.96 -26.73 -0.27 -4.97 16 22 C -0.22 -4.75 8.17 -26.73 -0.22 -4.97 16 23 C 0.07 1.37 3.75 -3.83 -0.01 1.35 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.68 6.51 -51.92 -0.34 0.34 16 26 H 0.05 0.60 6.49 -51.93 -0.34 0.26 16 27 H 0.08 1.19 7.60 -51.92 -0.39 0.79 16 28 H 0.06 0.77 6.41 -51.93 -0.33 0.43 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.65 6.38 -51.92 -0.33 0.32 16 31 H 0.07 1.36 6.09 -51.93 -0.32 1.04 16 32 H 0.03 0.38 6.62 -51.93 -0.34 0.04 16 33 H 0.37 5.07 9.12 45.56 0.42 5.48 16 34 H 0.06 0.87 6.31 -51.93 -0.33 0.54 16 35 H 0.06 0.75 6.58 -51.93 -0.34 0.41 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.23 6.66 -51.93 -0.35 0.88 16 38 H 0.09 1.99 5.29 -51.93 -0.27 1.72 16 39 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 40 H -0.02 -0.42 8.08 -51.93 -0.42 -0.84 16 41 H 0.11 2.96 6.08 -51.93 -0.32 2.64 16 42 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 43 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 44 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 47 H 0.02 0.28 6.39 -51.93 -0.33 -0.05 16 48 H 0.07 1.56 7.74 -51.93 -0.40 1.16 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -27.26 346.82 -8.88 -36.14 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -7.67 Total: 8.26 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -0.72 Total: -21.23 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: -0.25 Total: -34.17 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.43 Total: -10.06 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.26 -8.88 -36.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602833519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.927 kcal (2) G-P(sol) polarization free energy of solvation -27.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds