Wall clock time and date at job start Tue Mar 31 2020 05:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99412 * 2 1 4 4 O 1.21587 * 120.00629 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99801 * 180.02562 * 3 2 1 6 6 C 1.46502 * 120.00152 * 179.97438 * 5 3 2 7 7 C 1.53118 * 109.52216 * 154.99727 * 6 5 3 8 8 C 1.53042 * 109.27828 * 177.56187 * 7 6 5 9 9 N 1.46850 * 109.52222 * 300.81996 * 8 7 6 10 10 C 1.46891 * 111.00071 * 185.83809 * 9 8 7 11 11 C 1.53002 * 109.47327 * 171.53745 * 10 9 8 12 12 C 1.50691 * 115.55028 * 305.82296 * 11 10 9 13 13 H 1.07994 * 120.00523 * 144.62319 * 12 11 10 14 14 C 1.37886 * 120.00083 * 324.62397 * 12 11 10 15 15 N 1.31516 * 119.99575 * 351.00089 * 14 12 11 16 16 Si 1.86796 * 120.00236 * 171.00649 * 14 12 11 17 17 H 1.48493 * 109.47425 * 89.99776 * 16 14 12 18 18 H 1.48499 * 109.46911 * 210.00166 * 16 14 12 19 19 H 1.48504 * 109.46795 * 329.99506 * 16 14 12 20 20 C 1.52997 * 117.50044 * 160.14843 * 11 10 9 21 21 C 1.53004 * 117.49698 * 91.49161 * 11 10 9 22 22 C 1.46854 * 111.19512 * 61.74142 * 9 8 7 23 23 C 1.53029 * 109.52461 * 298.25777 * 22 9 8 24 24 H 1.08994 * 109.47205 * 60.00064 * 1 2 3 25 25 H 1.09003 * 109.46575 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47166 * 299.99501 * 1 2 3 27 27 H 0.96994 * 120.00163 * 180.02562 * 2 1 3 28 28 H 0.97001 * 120.00155 * 0.02562 * 5 3 2 29 29 H 1.09003 * 109.57508 * 34.84698 * 6 5 3 30 30 H 1.09003 * 109.50419 * 57.62198 * 7 6 5 31 31 H 1.09003 * 109.50521 * 297.50383 * 7 6 5 32 32 H 1.09004 * 109.46298 * 180.81047 * 8 7 6 33 33 H 1.08998 * 109.46161 * 60.83903 * 8 7 6 34 34 H 1.09003 * 109.47361 * 51.53710 * 10 9 8 35 35 H 1.09007 * 109.47275 * 291.53957 * 10 9 8 36 36 H 0.97004 * 119.99825 * 185.00744 * 15 14 12 37 37 H 1.09002 * 117.49987 * 0.02562 * 20 11 10 38 38 H 1.09006 * 117.49958 * 145.01905 * 20 11 10 39 39 H 1.09003 * 117.49541 * 214.98580 * 21 11 10 40 40 H 1.09006 * 117.49853 * 359.97438 * 21 11 10 41 41 H 1.09006 * 109.45898 * 58.27421 * 22 9 8 42 42 H 1.08999 * 109.46165 * 178.23843 * 22 9 8 43 43 H 1.08999 * 109.50538 * 299.23768 * 23 22 9 44 44 H 1.09005 * 109.50530 * 179.11948 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5309 2.2203 0.0005 5 7 3.4866 1.1674 -0.0005 6 6 4.2190 2.4361 -0.0011 7 6 5.6078 2.2255 0.6084 8 6 6.3900 3.5396 0.5495 9 7 6.5100 3.9771 -0.8471 10 6 7.3724 5.1612 -0.9556 11 6 7.6445 5.4607 -2.4312 12 6 8.2066 4.3158 -3.2338 13 1 7.9201 4.1888 -4.2672 14 6 9.0868 3.4303 -2.6487 15 7 9.5733 3.6804 -1.4526 16 14 9.5884 1.8758 -3.5547 17 1 10.7958 2.1486 -4.3750 18 1 9.8898 0.8049 -2.5710 19 1 8.4781 1.4379 -4.4384 20 6 8.1118 6.8723 -2.7911 21 6 6.6919 6.4226 -3.1441 22 6 5.1903 4.2313 -1.4391 23 6 4.3723 2.9379 -1.4396 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.9501 -0.8400 -0.0004 28 1 3.9717 0.3274 -0.0013 29 1 3.6719 3.1739 0.5858 30 1 6.1403 1.4595 0.0446 31 1 5.5055 1.9091 1.6464 32 1 7.3846 3.3894 0.9697 33 1 5.8641 4.3014 1.1249 34 1 8.3158 4.9718 -0.4434 35 1 6.8753 6.0161 -0.4970 36 1 10.2472 3.0960 -1.0713 37 1 8.2260 7.5877 -1.9766 38 1 8.8258 6.9730 -3.6087 39 1 6.4721 6.2275 -4.1937 40 1 5.8712 6.8419 -2.5619 41 1 4.6700 4.9899 -0.8543 42 1 5.3134 4.5835 -2.4632 43 1 4.8853 2.1831 -2.0355 44 1 3.3872 3.1305 -1.8647 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602844493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:24 Heat of formation + Delta-G solvation = 3.106936 kcal Electronic energy + Delta-G solvation = -23254.094051 eV Core-core repulsion = 20014.280230 eV Total energy + Delta-G solvation = -3239.813821 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.05550 -38.37366 -36.40940 -34.57275 -34.19660 -31.97597 -30.80050 -30.25307 -26.88707 -25.59653 -24.79981 -22.68632 -22.09202 -21.02495 -20.70916 -19.54570 -18.81962 -18.30280 -16.53561 -16.08277 -15.42056 -14.93993 -14.60521 -14.52634 -14.19702 -14.14203 -13.65080 -13.45773 -13.37628 -12.76908 -12.58211 -12.43278 -12.35557 -11.80638 -11.38173 -11.20977 -10.89366 -10.83967 -10.68090 -10.47635 -10.39515 -10.34828 -10.16840 -10.01325 -9.84241 -9.28706 -9.19890 -8.91406 -8.72981 -8.50890 -7.92370 -7.10146 -5.84619 -3.86986 2.75574 3.27025 3.35516 3.42316 3.47673 4.27528 4.50541 4.79616 4.99626 5.10757 5.23546 5.33276 5.38651 5.54721 5.62187 5.69462 5.76961 5.89118 5.99441 6.06271 6.17625 6.23496 6.33823 6.36170 6.41956 6.46211 6.52165 6.63705 6.68865 6.74022 6.76006 6.78404 6.93039 6.99099 7.02101 7.27383 7.40683 7.66625 8.03251 8.08879 8.25935 8.30955 8.62354 8.65121 9.06272 9.72579 11.17162 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.004830 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.782059 B = 5795.499398 C = 6374.909566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.756 5.756 3 C 0.701 3.299 4 O -0.592 6.592 5 N -0.739 5.739 6 C 0.163 3.837 7 C -0.119 4.119 8 C 0.065 3.935 9 N -0.497 5.497 10 C 0.104 3.896 11 C 0.068 3.932 12 C -0.473 4.473 13 H 0.052 0.948 14 C 0.091 3.909 15 N -0.875 5.875 16 Si 0.889 3.111 17 H -0.287 1.287 18 H -0.288 1.288 19 H -0.276 1.276 20 C -0.207 4.207 21 C -0.220 4.220 22 C 0.061 3.939 23 C -0.122 4.122 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.396 0.604 28 H 0.394 0.606 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.016 0.984 34 H 0.117 0.883 35 H -0.016 1.016 36 H 0.256 0.744 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.012 0.988 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.160 -7.945 5.505 14.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.412 5.412 3 C 0.400 3.600 4 O -0.469 6.469 5 N -0.392 5.392 6 C 0.059 3.941 7 C -0.157 4.157 8 C -0.064 4.064 9 N -0.220 5.220 10 C -0.023 4.023 11 C 0.067 3.933 12 C -0.511 4.511 13 H 0.071 0.929 14 C -0.112 4.112 15 N -0.513 5.513 16 Si 0.718 3.282 17 H -0.213 1.213 18 H -0.214 1.214 19 H -0.201 1.201 20 C -0.246 4.246 21 C -0.257 4.257 22 C -0.068 4.068 23 C -0.161 4.161 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.229 0.771 28 H 0.227 0.773 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.034 0.966 34 H 0.135 0.865 35 H 0.002 0.998 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.030 0.970 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.449 -7.457 5.428 14.702 hybrid contribution 0.284 -0.938 -0.118 0.987 sum -11.165 -8.395 5.310 14.944 Atomic orbital electron populations 1.21344 0.78498 1.01621 1.02173 1.44950 1.07623 1.07253 1.81371 1.16021 0.82053 0.84123 0.77756 1.90921 1.67938 1.30273 1.57812 1.45329 1.04318 1.10071 1.79501 1.20988 0.91527 0.84049 0.97555 1.21844 0.94142 0.99831 0.99887 1.21897 0.99480 0.94107 0.90914 1.61645 1.10330 1.36009 1.14007 1.21750 0.97201 0.86431 0.96873 1.18940 0.94473 0.87918 0.91929 1.20272 1.26179 1.08515 0.96092 0.92944 1.24701 0.95485 0.96769 0.94223 1.69771 1.27624 1.38004 1.15893 0.86666 0.78339 0.83881 0.79354 1.21323 1.21368 1.20103 1.22978 0.96153 1.03052 1.02421 1.22974 0.92346 1.10057 1.00358 1.22055 0.89191 0.94242 1.01330 1.21954 0.99455 0.98856 0.95806 0.92484 0.90942 0.92579 0.77140 0.77290 0.90179 0.90590 0.92043 0.90261 0.96594 0.86504 0.99825 0.93397 0.92051 0.90540 0.90913 0.91865 0.96964 0.89263 0.91003 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.92 10.70 59.85 0.64 1.56 16 2 N -0.76 -7.51 5.72 -72.06 -0.41 -7.92 16 3 C 0.70 9.98 8.54 -86.92 -0.74 9.23 16 4 O -0.59 -11.03 16.01 5.29 0.08 -10.95 16 5 N -0.74 -9.54 5.08 -58.55 -0.30 -9.83 16 6 C 0.16 2.52 2.52 -67.81 -0.17 2.35 16 7 C -0.12 -1.78 5.57 -26.65 -0.15 -1.93 16 8 C 0.07 1.17 5.46 -3.83 -0.02 1.15 16 9 N -0.50 -10.39 4.25 -234.66 -1.00 -11.39 16 10 C 0.10 2.40 4.04 -3.83 -0.02 2.39 16 11 C 0.07 1.65 1.34 -155.66 -0.21 1.45 16 12 C -0.47 -12.62 8.73 -34.44 -0.30 -12.92 16 13 H 0.05 1.43 7.83 -52.49 -0.41 1.02 16 14 C 0.09 2.40 5.18 -17.82 -0.09 2.30 16 15 N -0.88 -23.22 10.69 55.43 0.59 -22.62 16 16 Si 0.89 20.89 29.55 -169.99 -5.02 15.87 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 C -0.21 -4.74 9.96 -26.70 -0.27 -5.01 16 21 C -0.22 -4.83 8.16 -26.69 -0.22 -5.05 16 22 C 0.06 1.19 5.15 -3.83 -0.02 1.17 16 23 C -0.12 -2.12 5.67 -26.66 -0.15 -2.27 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.40 2.66 8.84 -40.82 -0.36 2.30 16 28 H 0.39 3.95 8.62 -40.82 -0.35 3.60 16 29 H 0.08 1.38 7.58 -51.93 -0.39 0.98 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 33 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.12 2.95 5.86 -51.93 -0.30 2.65 16 35 H -0.02 -0.36 8.08 -51.92 -0.42 -0.78 16 36 H 0.26 6.57 8.32 -40.82 -0.34 6.23 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.09 1.90 5.77 -51.93 -0.30 1.60 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -30.42 348.43 -10.11 -40.53 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.59 Total: 6.64 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -1.71 Total: -5.57 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -1.12 Total: -51.77 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.42 -10.11 -40.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602844493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.636 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds