Wall clock time and date at job start Tue Mar 31 2020 05:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47077 * 2 1 4 4 N 1.46500 * 109.46970 * 120.00248 * 2 1 3 5 5 C 1.46500 * 119.99984 * 304.35485 * 4 2 1 6 6 C 1.50704 * 109.47096 * 270.00414 * 5 4 2 7 7 H 1.07992 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99933 * 180.02562 * 6 5 4 9 9 N 1.31522 * 120.00099 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00186 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46752 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.46984 * 119.99593 * 10 8 6 13 13 H 1.48500 * 109.46928 * 239.99745 * 10 8 6 14 14 C 1.34781 * 119.99975 * 124.35805 * 4 2 1 15 15 O 1.21281 * 119.99843 * 185.33541 * 14 4 2 16 16 C 1.50697 * 120.00196 * 5.33733 * 14 4 2 17 17 C 1.52991 * 109.47199 * 173.65852 * 16 14 4 18 18 C 1.53008 * 109.47149 * 174.99869 * 17 16 14 19 19 C 1.52999 * 109.47034 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.47392 * 299.99865 * 19 18 17 21 21 C 1.53004 * 109.47010 * 300.00501 * 20 19 18 22 22 C 1.53008 * 109.46921 * 60.00065 * 20 19 18 23 23 C 1.52999 * 109.47034 * 300.00154 * 22 20 19 24 24 H 1.08998 * 109.47315 * 295.54727 * 1 2 3 25 25 H 1.09005 * 109.46936 * 55.54483 * 1 2 3 26 26 H 1.09003 * 109.46971 * 175.54364 * 1 2 3 27 27 H 1.09005 * 109.47257 * 240.00216 * 2 1 3 28 28 H 1.09004 * 109.47310 * 184.64542 * 3 2 1 29 29 H 1.08994 * 109.47245 * 304.64359 * 3 2 1 30 30 H 1.08997 * 109.47172 * 64.65004 * 3 2 1 31 31 H 1.08994 * 109.46814 * 29.99998 * 5 4 2 32 32 H 1.09001 * 109.46969 * 150.00406 * 5 4 2 33 33 H 0.96995 * 120.00348 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.47258 * 53.65157 * 16 14 4 35 35 H 1.09007 * 109.47163 * 293.66085 * 16 14 4 36 36 H 1.08997 * 109.47662 * 54.99859 * 17 16 14 37 37 H 1.08997 * 109.46843 * 60.00049 * 18 17 16 38 38 H 1.09002 * 109.46952 * 299.99620 * 18 17 16 39 39 H 1.08997 * 109.47298 * 59.99640 * 19 18 17 40 40 H 1.08999 * 109.46770 * 180.02562 * 19 18 17 41 41 H 1.08999 * 109.47638 * 179.97438 * 20 19 18 42 42 H 1.08990 * 109.47544 * 59.99544 * 21 20 19 43 43 H 1.08998 * 109.46781 * 179.97438 * 21 20 19 44 44 H 1.08995 * 109.46578 * 299.99247 * 21 20 19 45 45 H 1.09002 * 109.46952 * 180.02562 * 22 20 19 46 46 H 1.08997 * 109.46843 * 59.99914 * 22 20 19 47 47 H 1.09007 * 109.46826 * 300.00083 * 23 22 20 48 48 H 1.08995 * 109.47004 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.5874 -0.2483 2.5246 6 6 2.5455 0.7934 3.0425 7 1 3.3910 1.0953 2.4423 8 6 2.3432 1.3601 4.2829 9 7 1.3138 0.9921 5.0141 10 14 3.5312 2.6508 4.9252 11 1 4.5976 2.8862 3.9190 12 1 2.7978 3.9176 5.1756 13 1 4.1427 2.1740 6.1917 14 6 2.8640 -1.7331 1.0744 15 8 3.1921 -2.3655 2.0558 16 6 3.4019 -2.1126 -0.2812 17 6 4.4509 -3.2150 -0.1231 18 6 4.9064 -3.6875 -1.5053 19 6 5.9560 -4.7894 -1.3473 20 6 7.1575 -4.2423 -0.5739 21 6 7.7647 -3.0657 -1.3405 22 6 6.7020 -3.7698 0.8083 23 6 5.6524 -2.6679 0.6503 24 1 -0.3634 0.4432 0.9272 25 1 -0.3633 0.5814 -0.8474 26 1 -0.3633 -1.0246 -0.0799 27 1 1.8933 -0.5138 -0.8900 28 1 3.1268 1.4436 -0.0832 29 1 1.6103 1.9797 -0.8454 30 1 1.7462 1.9317 0.9287 31 1 0.5870 0.1793 2.4584 32 1 1.5743 -1.1000 3.2047 33 1 1.1712 1.3911 5.8867 34 1 3.8590 -1.2401 -0.7481 35 1 2.5863 -2.4743 -0.9075 36 1 4.0180 -4.0531 0.4229 37 1 5.3394 -2.8494 -2.0513 38 1 4.0504 -4.0769 -2.0565 39 1 5.5234 -5.6276 -0.8010 40 1 6.2808 -5.1257 -2.3319 41 1 7.9050 -5.0275 -0.4608 42 1 7.0170 -2.2807 -1.4531 43 1 8.6203 -2.6757 -0.7893 44 1 8.0892 -3.4024 -2.3251 45 1 7.5578 -3.3796 1.3592 46 1 6.2693 -4.6080 1.3545 47 1 6.0851 -1.8297 0.1040 48 1 5.3283 -2.3310 1.6349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609661486.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:01 Heat of formation + Delta-G solvation = -75.606450 kcal Electronic energy + Delta-G solvation = -23750.568203 eV Core-core repulsion = 20610.881457 eV Total energy + Delta-G solvation = -3139.686746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.76028 -38.44603 -35.91092 -33.28912 -32.67862 -30.78519 -30.58279 -28.83404 -27.12174 -26.71695 -25.45040 -22.82997 -22.48180 -21.37757 -20.63381 -18.53326 -17.81453 -16.49693 -16.40068 -15.66271 -15.15032 -14.76549 -14.49523 -14.28648 -13.81369 -13.69885 -13.39525 -13.20677 -12.90057 -12.51226 -12.37467 -12.30489 -11.89530 -11.71021 -11.68414 -11.48404 -11.42183 -11.25874 -11.10082 -10.90235 -10.86002 -10.80065 -10.70508 -10.55690 -10.32404 -10.00402 -9.98396 -9.85207 -9.78900 -9.48066 -8.69004 -8.39342 -7.55245 -6.00771 -4.03908 3.30392 3.38297 3.41297 3.54601 4.00815 4.46865 4.74470 4.77721 4.85194 5.11297 5.25031 5.26907 5.32886 5.34700 5.45130 5.46237 5.58042 5.61525 5.70019 5.71455 5.72376 5.76444 5.85417 5.89167 5.95117 6.01998 6.04692 6.09665 6.15767 6.21137 6.26268 6.30903 6.35276 6.38152 6.43547 6.50633 6.63400 6.75903 6.83820 7.00053 7.19502 7.54049 7.65708 7.97229 8.29868 8.54998 8.96515 9.21015 9.60473 11.07243 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016948 B = 0.005038 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.670244 B = 5556.612503 C = 6407.377464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.135 3.865 3 C -0.161 4.161 4 N -0.596 5.596 5 C 0.243 3.757 6 C -0.517 4.517 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.893 3.107 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.506 3.494 15 O -0.542 6.542 16 C -0.138 4.138 17 C -0.068 4.068 18 C -0.116 4.116 19 C -0.112 4.112 20 C -0.092 4.092 21 C -0.150 4.150 22 C -0.111 4.111 23 C -0.120 4.120 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.261 0.739 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.760 -6.545 -15.610 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.030 3.970 3 C -0.219 4.219 4 N -0.328 5.328 5 C 0.124 3.876 6 C -0.556 4.556 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.721 3.279 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.293 3.707 15 O -0.420 6.420 16 C -0.178 4.178 17 C -0.087 4.087 18 C -0.153 4.153 19 C -0.149 4.149 20 C -0.111 4.111 21 C -0.207 4.207 22 C -0.149 4.149 23 C -0.157 4.157 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.828 -6.830 -14.901 17.397 hybrid contribution 0.568 0.896 0.403 1.135 sum 6.395 -5.934 -14.498 16.920 Atomic orbital electron populations 1.22157 0.95621 1.01528 1.02721 1.20951 0.94090 0.93907 0.88071 1.22198 1.00728 0.96046 1.02963 1.48324 1.45515 1.30453 1.08493 1.19235 0.95218 0.95613 0.77505 1.21488 1.10789 1.21419 1.01905 0.92369 1.24928 0.95528 0.97156 0.96566 1.69944 1.28587 1.43178 1.11751 0.86521 0.81135 0.81255 0.78989 1.19842 1.21060 1.20982 1.20357 0.79301 0.80504 0.90505 1.90629 1.58713 1.52493 1.40134 1.21789 0.99388 1.00082 0.96540 1.20865 0.94853 0.97508 0.95432 1.21641 0.98144 0.98493 0.97035 1.21526 0.95766 0.98065 0.99570 1.21108 0.96782 0.97446 0.95718 1.21933 1.00668 0.98718 0.99394 1.21530 0.98601 0.99026 0.95741 1.21687 0.94529 0.97310 1.02148 0.91082 0.92348 0.93039 0.90832 0.93135 0.93322 0.89717 0.94872 0.94043 0.92901 0.89912 0.89968 0.90533 0.91848 0.92388 0.92108 0.92485 0.91923 0.91811 0.93071 0.93308 0.92437 0.92087 0.92626 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.19 37.16 0.34 -2.09 16 2 C 0.13 2.20 3.11 -67.93 -0.21 1.99 16 3 C -0.16 -2.65 8.74 37.16 0.32 -2.33 16 4 N -0.60 -12.46 2.39 -167.47 -0.40 -12.86 16 5 C 0.24 6.28 4.74 -5.19 -0.02 6.26 16 6 C -0.52 -14.31 7.71 -34.44 -0.27 -14.58 16 7 H 0.06 1.62 7.59 -52.49 -0.40 1.22 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 10 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.51 10.39 7.26 -10.98 -0.08 10.31 16 15 O -0.54 -13.31 13.78 5.56 0.08 -13.23 16 16 C -0.14 -2.05 3.50 -27.89 -0.10 -2.15 16 17 C -0.07 -0.96 1.84 -90.62 -0.17 -1.12 16 18 C -0.12 -1.27 4.93 -26.73 -0.13 -1.40 16 19 C -0.11 -1.15 5.45 -26.73 -0.15 -1.30 16 20 C -0.09 -0.99 3.20 -90.61 -0.29 -1.28 16 21 C -0.15 -1.51 8.50 37.16 0.32 -1.20 16 22 C -0.11 -1.45 5.45 -26.73 -0.15 -1.60 16 23 C -0.12 -1.81 4.67 -26.73 -0.12 -1.94 16 24 H 0.07 1.23 6.34 -51.93 -0.33 0.91 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.00 5.86 -51.93 -0.30 0.70 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.67 6.60 -51.93 -0.34 1.33 16 31 H 0.03 0.87 6.12 -51.93 -0.32 0.55 16 32 H 0.04 1.23 7.36 -51.93 -0.38 0.85 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.08 1.14 7.79 -51.93 -0.40 0.73 16 35 H 0.08 1.05 7.78 -51.93 -0.40 0.65 16 36 H 0.08 1.22 7.86 -51.93 -0.41 0.81 16 37 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.68 4.81 -51.93 -0.25 0.43 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 48 H 0.08 1.62 6.19 -51.93 -0.32 1.29 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -30.95 357.22 -8.76 -39.71 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.74 Total: 0.80 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -0.80 Total: -10.82 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.34 Total: -38.64 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.23 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.95 -8.76 -39.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609661486.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.892 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds