Wall clock time and date at job start Tue Mar 31 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46981 * 2 1 4 4 C 1.53005 * 109.47123 * 174.80420 * 3 2 1 5 5 C 1.52995 * 109.47082 * 187.00153 * 4 3 2 6 6 C 1.52997 * 109.47291 * 54.80599 * 3 2 1 7 7 C 1.53005 * 109.47268 * 59.99703 * 6 3 2 8 8 C 1.50695 * 109.47201 * 294.80566 * 3 2 1 9 9 O 1.21276 * 120.00207 * 127.27392 * 8 3 2 10 10 N 1.34780 * 120.00050 * 307.27178 * 8 3 2 11 11 C 1.46919 * 120.63223 * 174.69052 * 10 8 3 12 12 C 1.53192 * 108.89513 * 126.29728 * 11 10 8 13 13 C 1.53350 * 109.14717 * 54.57869 * 12 11 10 14 14 C 1.50704 * 109.40897 * 178.68371 * 13 12 11 15 15 H 1.08001 * 120.00501 * 120.11522 * 14 13 12 16 16 C 1.37883 * 119.99795 * 300.12251 * 14 13 12 17 17 N 1.31510 * 119.99740 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00006 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47352 * 89.99631 * 18 16 14 20 20 H 1.48504 * 109.47048 * 209.99633 * 18 16 14 21 21 H 1.48505 * 109.47317 * 329.99422 * 18 16 14 22 22 C 1.53044 * 109.60712 * 298.71158 * 13 12 11 23 23 C 1.46927 * 120.62589 * 354.66569 * 10 8 3 24 24 H 1.09008 * 109.47265 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47222 * 300.00297 * 1 2 3 26 26 H 1.09004 * 109.47270 * 60.00219 * 1 2 3 27 27 H 1.08997 * 109.47222 * 239.99703 * 2 1 3 28 28 H 1.08998 * 109.46609 * 119.99812 * 2 1 3 29 29 H 1.08995 * 109.46763 * 307.00275 * 4 3 2 30 30 H 1.09001 * 109.46899 * 66.99581 * 4 3 2 31 31 H 1.08998 * 109.47302 * 60.00557 * 5 4 3 32 32 H 1.09001 * 109.46919 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.46929 * 299.99834 * 5 4 3 34 34 H 1.08995 * 109.47388 * 179.97438 * 6 3 2 35 35 H 1.09002 * 109.47190 * 300.00343 * 6 3 2 36 36 H 1.08998 * 109.47302 * 180.02562 * 7 6 3 37 37 H 1.08995 * 109.47002 * 300.00341 * 7 6 3 38 38 H 1.09001 * 109.47013 * 60.00137 * 7 6 3 39 39 H 1.09000 * 109.58858 * 246.15648 * 11 10 8 40 40 H 1.08999 * 109.58952 * 6.43802 * 11 10 8 41 41 H 1.09004 * 109.50093 * 174.65602 * 12 11 10 42 42 H 1.09000 * 109.49743 * 294.75607 * 12 11 10 43 43 H 1.09001 * 109.43418 * 58.75982 * 13 12 11 44 44 H 0.97002 * 119.99929 * 180.02562 * 17 16 14 45 45 H 1.09003 * 109.49405 * 301.42306 * 22 13 12 46 46 H 1.08998 * 109.52280 * 181.34239 * 22 13 12 47 47 H 1.08996 * 109.59357 * 353.41849 * 23 10 8 48 48 H 1.09004 * 109.58167 * 113.70658 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5644 1.4445 0.1306 5 6 4.0593 2.8815 0.3061 6 6 1.4261 2.2005 1.1788 7 6 1.8266 1.5179 2.4883 8 6 1.6454 2.1148 -1.2897 9 8 1.0551 3.1739 -1.2656 10 7 1.9485 1.5390 -2.4700 11 6 1.4707 2.1212 -3.7315 12 6 2.6679 2.3393 -4.6620 13 6 3.4264 1.0164 -4.8243 14 6 4.5870 1.2167 -5.7646 15 1 5.5954 1.0321 -5.4248 16 6 4.3614 1.6357 -7.0587 17 7 3.1335 1.8601 -7.4725 18 14 5.7999 1.8832 -8.2244 19 1 6.0756 0.6154 -8.9467 20 1 5.4656 2.9483 -9.2038 21 1 7.0020 2.2830 -7.4495 22 6 3.9480 0.5530 -3.4621 23 6 2.7636 0.3176 -2.5195 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.8555 0.8516 0.9976 30 1 4.0066 1.0150 -0.7683 31 1 3.6171 3.3109 1.2050 32 1 5.1454 2.8830 0.3987 33 1 3.7682 3.4744 -0.5610 34 1 1.7898 3.2280 1.1791 35 1 0.3401 2.1990 1.0858 36 1 1.3890 2.0576 3.3280 37 1 1.4633 0.4903 2.4882 38 1 2.9127 1.5193 2.5813 39 1 0.7612 1.4408 -4.2023 40 1 0.9842 3.0759 -3.5322 41 1 2.3150 2.6818 -5.6348 42 1 3.3320 3.0884 -4.2310 43 1 2.7548 0.2609 -5.2322 44 1 2.9747 2.1546 -8.3830 45 1 4.6002 1.3190 -3.0426 46 1 4.5071 -0.3748 -3.5826 47 1 3.1323 0.0835 -1.5209 48 1 2.1587 -0.5105 -2.8892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611679551.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:32 Heat of formation + Delta-G solvation = -49.102027 kcal Electronic energy + Delta-G solvation = -24538.924439 eV Core-core repulsion = 21400.387011 eV Total energy + Delta-G solvation = -3138.537428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.77984 -37.37214 -36.46313 -33.57001 -32.27807 -31.30886 -30.87698 -29.80472 -27.17603 -26.06491 -24.34091 -23.05199 -22.36865 -21.95434 -20.64049 -19.02228 -18.10187 -16.47942 -15.94820 -15.86610 -15.71805 -15.06099 -14.54836 -14.32702 -13.68339 -13.40303 -13.14799 -13.01874 -12.82010 -12.76638 -12.64093 -12.47117 -12.26763 -12.10208 -11.71445 -11.58677 -11.54220 -11.25354 -11.09411 -10.94745 -10.89415 -10.70397 -10.57031 -10.39815 -10.28514 -10.08851 -10.03688 -9.55865 -9.32208 -8.95013 -8.85903 -8.36264 -7.92188 -6.01469 -4.08211 3.09176 3.28484 3.35902 3.38634 3.54743 4.41358 4.60627 4.62672 4.85959 5.06821 5.17693 5.27278 5.28388 5.34467 5.41779 5.46237 5.47976 5.56979 5.70769 5.73140 5.80494 5.83875 5.90280 5.95762 5.97936 6.04613 6.06948 6.10911 6.22802 6.26306 6.27579 6.32488 6.34469 6.44083 6.49063 6.56853 6.63172 6.89318 6.99487 7.22435 7.36050 7.70491 7.92881 8.00990 8.08120 8.40675 8.67834 8.95117 9.56868 11.03852 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029144 B = 0.004625 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.507160 B = 6053.149749 C = 6251.716360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.135 4.135 3 C -0.073 4.073 4 C -0.126 4.126 5 C -0.155 4.155 6 C -0.102 4.102 7 C -0.154 4.154 8 C 0.525 3.475 9 O -0.556 6.556 10 N -0.597 5.597 11 C 0.108 3.892 12 C -0.121 4.121 13 C 0.050 3.950 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.125 4.125 23 C 0.087 3.913 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.037 0.963 43 H 0.026 0.974 44 H 0.260 0.740 45 H 0.053 0.947 46 H 0.060 0.940 47 H 0.093 0.907 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 -4.038 16.443 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C -0.076 4.076 4 C -0.163 4.163 5 C -0.212 4.212 6 C -0.140 4.140 7 C -0.211 4.211 8 C 0.313 3.687 9 O -0.435 6.435 10 N -0.329 5.329 11 C -0.014 4.014 12 C -0.159 4.159 13 C 0.031 3.969 14 C -0.552 4.552 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.163 4.163 23 C -0.035 4.035 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.111 0.889 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.689 -3.419 16.267 16.838 hybrid contribution 0.786 0.122 -0.872 1.180 sum -1.903 -3.297 15.395 15.859 Atomic orbital electron populations 1.21836 0.95586 1.01441 1.02246 1.22093 0.96706 0.94712 1.03657 1.20833 0.96823 0.96297 0.93696 1.21908 0.92858 0.98431 1.03120 1.21843 1.00578 0.96413 1.02347 1.21430 1.00872 0.99461 0.92229 1.21894 1.01570 1.00703 0.96951 1.20362 0.78705 0.84762 0.84917 1.90623 1.43198 1.22376 1.87324 1.48132 1.51364 1.27192 1.06190 1.21852 0.98230 0.98078 0.83211 1.22037 0.94597 1.00055 0.99235 1.18672 0.95286 0.93136 0.89768 1.21191 0.92975 1.45143 0.95850 0.92769 1.24960 0.95516 0.95328 0.98120 1.69849 1.19065 1.46592 1.17381 0.86631 0.82895 0.77821 0.80861 1.20737 1.21258 1.20001 1.22038 0.95697 1.00731 0.97879 1.22425 0.93507 0.86459 1.01118 0.92726 0.92291 0.92731 0.89621 0.90984 0.90963 0.89976 0.92266 0.92702 0.92427 0.90940 0.91384 0.92965 0.92516 0.92423 0.92557 0.90801 0.88020 0.94451 0.95581 0.92979 0.92846 0.92172 0.88941 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.23 37.16 0.34 -1.40 16 2 C -0.13 -1.50 4.10 -26.73 -0.11 -1.61 16 3 C -0.07 -0.95 0.09 -155.66 -0.01 -0.97 16 4 C -0.13 -1.51 4.08 -26.73 -0.11 -1.62 16 5 C -0.15 -1.96 9.19 37.16 0.34 -1.62 16 6 C -0.10 -1.25 3.29 -26.73 -0.09 -1.34 16 7 C -0.15 -1.43 9.14 37.16 0.34 -1.09 16 8 C 0.52 9.08 4.55 -10.99 -0.05 9.03 16 9 O -0.56 -11.49 15.40 5.56 0.09 -11.41 16 10 N -0.60 -10.66 2.96 -172.78 -0.51 -11.17 16 11 C 0.11 2.19 6.43 -3.71 -0.02 2.17 16 12 C -0.12 -2.81 5.17 -26.45 -0.14 -2.95 16 13 C 0.05 1.18 2.07 -91.57 -0.19 0.99 16 14 C -0.51 -13.63 8.56 -34.44 -0.29 -13.93 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -24.83 11.31 55.43 0.63 -24.20 16 18 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 C -0.13 -2.39 5.15 -26.61 -0.14 -2.53 16 23 C 0.09 1.38 3.88 -3.71 -0.01 1.37 16 24 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 25 H 0.06 0.63 6.34 -51.93 -0.33 0.30 16 26 H 0.05 0.74 7.39 -51.93 -0.38 0.36 16 27 H 0.09 0.98 4.29 -51.93 -0.22 0.76 16 28 H 0.07 0.66 6.72 -51.93 -0.35 0.31 16 29 H 0.07 0.70 6.82 -51.93 -0.35 0.35 16 30 H 0.08 1.06 4.92 -51.93 -0.26 0.80 16 31 H 0.06 0.69 6.14 -51.93 -0.32 0.37 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.90 7.45 -51.93 -0.39 0.51 16 34 H 0.07 0.98 6.20 -51.93 -0.32 0.66 16 35 H 0.07 0.89 6.34 -51.93 -0.33 0.56 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.48 6.55 -51.93 -0.34 0.14 16 38 H 0.06 0.50 6.46 -51.93 -0.34 0.17 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.55 7.00 -51.93 -0.36 1.18 16 41 H 0.10 2.65 6.05 -51.93 -0.31 2.34 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.05 1.05 8.07 -51.93 -0.42 0.63 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.09 1.22 2.73 -51.93 -0.14 1.08 16 48 H 0.06 0.93 7.96 -51.93 -0.41 0.52 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -29.06 341.21 -7.99 -37.05 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.08 Total: 2.56 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -0.24 Total: -13.92 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.12 Total: -35.37 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.06 -7.99 -37.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611679551.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.053 kcal (2) G-P(sol) polarization free energy of solvation -29.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds