Wall clock time and date at job start Tue Mar 31 2020 05:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99594 * 2 1 4 4 C 1.52994 * 109.47137 * 125.00620 * 3 2 1 5 5 N 1.46503 * 109.47349 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99491 * 269.99757 * 5 4 3 7 7 C 1.34773 * 120.00222 * 89.99316 * 5 4 3 8 8 O 1.21591 * 120.00021 * 0.02562 * 7 5 4 9 9 N 1.34769 * 119.99919 * 179.97438 * 7 5 4 10 10 C 1.46509 * 119.99850 * 179.97438 * 9 7 5 11 11 C 1.53350 * 109.41915 * 275.13242 * 10 9 7 12 12 C 1.53198 * 109.14641 * 178.67654 * 11 10 9 13 13 N 1.46925 * 108.89335 * 54.57862 * 12 11 10 14 14 C 1.36931 * 120.63201 * 126.29969 * 13 12 11 15 15 H 1.08005 * 119.99889 * 331.83485 * 14 13 12 16 16 C 1.38813 * 120.00220 * 151.82683 * 14 13 12 17 17 N 1.31618 * 120.00004 * 343.08678 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 163.08567 * 16 14 13 19 19 H 1.48496 * 109.47191 * 90.00149 * 18 16 14 20 20 H 1.48501 * 109.46981 * 210.00196 * 18 16 14 21 21 H 1.48500 * 109.46794 * 329.99854 * 18 16 14 22 22 C 1.46925 * 118.73856 * 306.31536 * 13 12 11 23 23 C 1.53044 * 109.45681 * 155.00448 * 10 9 7 24 24 H 1.08004 * 119.99520 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99847 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99847 * 180.02562 * 2 1 3 27 27 H 1.08989 * 109.47341 * 4.99919 * 3 2 1 28 28 H 1.09004 * 109.46796 * 245.00109 * 3 2 1 29 29 H 1.09001 * 109.47468 * 59.99042 * 4 3 2 30 30 H 1.09004 * 109.46860 * 299.99449 * 4 3 2 31 31 H 1.09001 * 109.46812 * 269.99548 * 6 5 4 32 32 H 1.08998 * 109.47215 * 29.99806 * 6 5 4 33 33 H 1.09000 * 109.47179 * 150.00030 * 6 5 4 34 34 H 0.97003 * 120.00205 * 0.02562 * 9 7 5 35 35 H 1.08997 * 109.45697 * 35.03653 * 10 9 7 36 36 H 1.08996 * 109.68537 * 58.71419 * 11 10 9 37 37 H 1.09000 * 109.47180 * 298.51335 * 11 10 9 38 38 H 1.08997 * 109.58387 * 294.71773 * 12 11 10 39 39 H 1.08993 * 109.58533 * 174.43928 * 12 11 10 40 40 H 0.96996 * 119.99787 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.58495 * 173.39541 * 22 13 12 42 42 H 1.09000 * 109.58924 * 293.68296 * 22 13 12 43 43 H 1.08996 * 109.49900 * 61.43623 * 23 10 9 44 44 H 1.08999 * 109.52516 * 301.35463 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0351 1.3331 1.1815 5 7 3.7679 2.6017 1.1812 6 6 5.0342 2.7157 0.4534 7 6 3.2772 3.6637 1.8503 8 8 2.2264 3.5688 2.4547 9 7 3.9517 4.8304 1.8504 10 6 3.4180 5.9850 2.5774 11 6 2.4158 6.7294 1.6868 12 6 1.8371 7.9158 2.4644 13 7 2.9438 8.7476 2.9562 14 6 2.9828 10.0890 2.6840 15 1 2.5162 10.4721 1.7884 16 6 3.6218 10.9566 3.5592 17 7 3.8947 10.5697 4.7872 18 14 4.0945 12.6732 2.9938 19 1 2.9774 13.6111 3.2723 20 1 5.3083 13.1182 3.7244 21 1 4.3735 12.6546 1.5354 22 6 4.0081 8.1127 3.7454 23 6 4.5656 6.9243 2.9556 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6212 1.4027 -0.9314 29 1 3.7400 0.5066 1.0920 30 1 2.4773 1.2356 2.1129 31 1 5.8587 2.4494 1.1148 32 1 5.0231 2.0416 -0.4030 33 1 5.1631 3.7412 0.1069 34 1 4.7902 4.9060 1.3686 35 1 2.9150 5.6436 3.4821 36 1 1.6094 6.0553 1.3985 37 1 2.9237 7.0929 0.7935 38 1 1.2524 7.5493 3.3081 39 1 1.1995 8.5072 1.8074 40 1 4.3416 11.1759 5.3986 41 1 4.8044 8.8334 3.9316 42 1 3.6010 7.7646 4.6948 43 1 5.0532 7.2857 2.0503 44 1 5.2890 6.3871 3.5688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615538677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:18 Heat of formation + Delta-G solvation = 11.536794 kcal Electronic energy + Delta-G solvation = -22527.811317 eV Core-core repulsion = 19288.363042 eV Total energy + Delta-G solvation = -3239.448275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.17069 -37.66539 -36.21039 -34.68951 -34.24529 -32.04979 -30.24632 -29.72120 -28.91005 -26.72715 -25.03876 -23.51042 -22.18666 -21.65907 -20.02110 -19.78951 -19.23712 -17.93742 -16.71679 -16.33922 -15.83119 -15.18916 -14.89428 -14.56280 -14.28158 -13.78439 -13.60037 -13.48893 -13.32436 -13.03344 -12.88229 -12.66077 -12.51730 -12.32966 -12.24293 -11.42256 -11.27700 -11.13945 -11.07726 -10.79060 -10.69181 -10.46919 -10.24578 -10.01075 -9.94423 -9.71962 -9.64229 -9.50263 -8.83452 -8.50679 -8.37813 -6.65863 -5.77884 -3.19750 2.05644 2.74880 3.38146 3.38264 3.45091 3.47390 4.05713 4.50979 4.69108 4.84367 4.90305 5.02457 5.07012 5.28100 5.36138 5.37021 5.42668 5.45565 5.54827 5.64530 5.68839 5.73685 5.93608 5.94702 6.11676 6.32730 6.36951 6.41590 6.42823 6.55173 6.57726 6.63446 6.64560 6.83531 6.93061 7.02554 7.11233 7.34764 7.64227 7.80853 8.11163 8.46629 8.78350 9.22721 9.86114 10.43506 11.31154 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035750 B = 0.003256 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.034568 B = 8597.906421 C = 8901.622574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.154 4.154 3 C -0.111 4.111 4 C 0.140 3.860 5 N -0.640 5.640 6 C 0.081 3.919 7 C 0.702 3.298 8 O -0.588 6.588 9 N -0.739 5.739 10 C 0.167 3.833 11 C -0.138 4.138 12 C 0.147 3.853 13 N -0.593 5.593 14 C -0.251 4.251 15 H 0.065 0.935 16 C 0.001 3.999 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.175 3.825 23 C -0.146 4.146 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.390 0.610 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.020 0.980 39 H 0.055 0.945 40 H 0.254 0.746 41 H 0.091 0.909 42 H 0.021 0.979 43 H 0.058 0.942 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.420 -19.285 -9.852 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.173 4.173 3 C -0.149 4.149 4 C 0.016 3.984 5 N -0.378 5.378 6 C -0.063 4.063 7 C 0.404 3.596 8 O -0.465 6.465 9 N -0.393 5.393 10 C 0.063 3.937 11 C -0.179 4.179 12 C 0.020 3.980 13 N -0.316 5.316 14 C -0.381 4.381 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.732 3.268 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.048 3.952 23 C -0.186 4.186 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.126 0.874 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.225 0.775 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.731 -19.214 -9.248 21.394 hybrid contribution 0.758 0.844 -0.595 1.281 sum 2.489 -18.370 -9.842 20.988 Atomic orbital electron populations 1.23908 0.96069 1.01923 1.00658 1.22821 0.96050 0.97999 1.00382 1.21153 0.98910 0.95991 0.98880 1.21208 0.94025 0.83757 0.99378 1.47084 1.24271 1.11694 1.54780 1.21688 0.85598 1.02507 0.96531 1.15974 0.83652 0.80276 0.79734 1.90913 1.23433 1.83415 1.48762 1.45698 1.26381 1.10738 1.56532 1.20979 0.95053 0.83134 0.94489 1.22437 0.98334 0.98107 0.99015 1.20873 0.90578 0.90874 0.95627 1.44090 1.20603 1.04688 1.62188 1.19180 1.33762 0.82452 1.02697 0.91701 1.25053 1.02313 0.97735 0.94609 1.70027 1.44972 1.36034 1.03764 0.86308 0.77921 0.84537 0.78070 1.21396 1.21583 1.20530 1.20738 0.92464 0.91145 0.90835 1.22533 0.96559 0.98168 1.01295 0.88557 0.88440 0.87413 0.90844 0.91221 0.90847 0.89669 0.92749 0.91051 0.91455 0.77477 0.90102 0.92720 0.92554 0.96166 0.92660 0.93622 0.89070 0.96064 0.92301 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 14.32 29.01 0.42 -1.24 16 2 C -0.15 -1.32 9.52 -36.03 -0.34 -1.66 16 3 C -0.11 -1.08 5.98 -27.89 -0.17 -1.25 16 4 C 0.14 1.43 5.39 -4.04 -0.02 1.41 16 5 N -0.64 -7.44 2.87 -187.35 -0.54 -7.98 16 6 C 0.08 0.62 10.20 59.85 0.61 1.23 16 7 C 0.70 11.09 8.24 -86.93 -0.72 10.37 16 8 O -0.59 -11.67 15.58 5.29 0.08 -11.59 16 9 N -0.74 -11.03 4.94 -58.47 -0.29 -11.32 16 10 C 0.17 3.03 2.42 -67.72 -0.16 2.87 16 11 C -0.14 -2.63 5.68 -26.45 -0.15 -2.78 16 12 C 0.15 3.25 6.50 -3.71 -0.02 3.23 16 13 N -0.59 -15.01 2.99 -172.32 -0.52 -15.53 16 14 C -0.25 -6.92 9.58 -15.06 -0.14 -7.07 16 15 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 16 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 17 N -0.90 -26.22 11.20 55.49 0.62 -25.59 16 18 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 23 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 24 H 0.10 0.69 8.06 -52.48 -0.42 0.27 16 25 H 0.10 0.92 7.84 -52.49 -0.41 0.51 16 26 H 0.11 0.73 8.06 -52.49 -0.42 0.30 16 27 H 0.07 0.91 7.79 -51.94 -0.40 0.51 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 30 H 0.08 1.06 7.42 -51.93 -0.39 0.67 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 33 H 0.07 0.50 6.36 -51.93 -0.33 0.17 16 34 H 0.39 4.75 6.33 -40.82 -0.26 4.49 16 35 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 41 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 353.02 15.07 5.32 5.32 Total: -1.00 -32.22 353.02 -8.83 -41.05 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.53 Total: 2.71 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -0.96 Total: 6.34 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -0.72 Total: -60.42 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.22 -8.83 -41.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615538677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.590 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds