Wall clock time and date at job start Tue Mar 31 2020 05:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99594 * 2 1 4 4 C 1.52994 * 109.47137 * 125.00620 * 3 2 1 5 5 N 1.46503 * 109.47349 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99491 * 269.99757 * 5 4 3 7 7 C 1.34773 * 120.00222 * 89.99316 * 5 4 3 8 8 O 1.21591 * 120.00021 * 0.02562 * 7 5 4 9 9 N 1.34769 * 119.99919 * 179.97438 * 7 5 4 10 10 C 1.46509 * 119.99850 * 179.97438 * 9 7 5 11 11 C 1.53350 * 109.41915 * 275.13242 * 10 9 7 12 12 C 1.53198 * 109.14641 * 178.67654 * 11 10 9 13 13 N 1.46925 * 108.89335 * 54.57862 * 12 11 10 14 14 C 1.36931 * 120.63201 * 126.29969 * 13 12 11 15 15 H 1.08005 * 119.99889 * 331.83485 * 14 13 12 16 16 C 1.38813 * 120.00220 * 151.82683 * 14 13 12 17 17 N 1.31618 * 120.00004 * 343.08678 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 163.08567 * 16 14 13 19 19 H 1.48496 * 109.47191 * 90.00149 * 18 16 14 20 20 H 1.48501 * 109.46981 * 210.00196 * 18 16 14 21 21 H 1.48500 * 109.46794 * 329.99854 * 18 16 14 22 22 C 1.46925 * 118.73856 * 306.31536 * 13 12 11 23 23 C 1.53044 * 109.45681 * 155.00448 * 10 9 7 24 24 H 1.08004 * 119.99520 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99847 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99847 * 180.02562 * 2 1 3 27 27 H 1.08989 * 109.47341 * 4.99919 * 3 2 1 28 28 H 1.09004 * 109.46796 * 245.00109 * 3 2 1 29 29 H 1.09001 * 109.47468 * 59.99042 * 4 3 2 30 30 H 1.09004 * 109.46860 * 299.99449 * 4 3 2 31 31 H 1.09001 * 109.46812 * 269.99548 * 6 5 4 32 32 H 1.08998 * 109.47215 * 29.99806 * 6 5 4 33 33 H 1.09000 * 109.47179 * 150.00030 * 6 5 4 34 34 H 0.97003 * 120.00205 * 0.02562 * 9 7 5 35 35 H 1.08997 * 109.45697 * 35.03653 * 10 9 7 36 36 H 1.08996 * 109.68537 * 58.71419 * 11 10 9 37 37 H 1.09000 * 109.47180 * 298.51335 * 11 10 9 38 38 H 1.08997 * 109.58387 * 294.71773 * 12 11 10 39 39 H 1.08993 * 109.58533 * 174.43928 * 12 11 10 40 40 H 0.96996 * 119.99787 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.58495 * 173.39541 * 22 13 12 42 42 H 1.09000 * 109.58924 * 293.68296 * 22 13 12 43 43 H 1.08996 * 109.49900 * 61.43623 * 23 10 9 44 44 H 1.08999 * 109.52516 * 301.35463 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0351 1.3331 1.1815 5 7 3.7679 2.6017 1.1812 6 6 5.0342 2.7157 0.4534 7 6 3.2772 3.6637 1.8503 8 8 2.2264 3.5688 2.4547 9 7 3.9517 4.8304 1.8504 10 6 3.4180 5.9850 2.5774 11 6 2.4158 6.7294 1.6868 12 6 1.8371 7.9158 2.4644 13 7 2.9438 8.7476 2.9562 14 6 2.9828 10.0890 2.6840 15 1 2.5162 10.4721 1.7884 16 6 3.6218 10.9566 3.5592 17 7 3.8947 10.5697 4.7872 18 14 4.0945 12.6732 2.9938 19 1 2.9774 13.6111 3.2723 20 1 5.3083 13.1182 3.7244 21 1 4.3735 12.6546 1.5354 22 6 4.0081 8.1127 3.7454 23 6 4.5656 6.9243 2.9556 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6212 1.4027 -0.9314 29 1 3.7400 0.5066 1.0920 30 1 2.4773 1.2356 2.1129 31 1 5.8587 2.4494 1.1148 32 1 5.0231 2.0416 -0.4030 33 1 5.1631 3.7412 0.1069 34 1 4.7902 4.9060 1.3686 35 1 2.9150 5.6436 3.4821 36 1 1.6094 6.0553 1.3985 37 1 2.9237 7.0929 0.7935 38 1 1.2524 7.5493 3.3081 39 1 1.1995 8.5072 1.8074 40 1 4.3416 11.1759 5.3986 41 1 4.8044 8.8334 3.9316 42 1 3.6010 7.7646 4.6948 43 1 5.0532 7.2857 2.0503 44 1 5.2890 6.3871 3.5688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615538677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:18 Heat of formation + Delta-G solvation = -8.347591 kcal Electronic energy + Delta-G solvation = -22528.673568 eV Core-core repulsion = 19288.363042 eV Total energy + Delta-G solvation = -3240.310526 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.37144 -39.23113 -37.28629 -36.02320 -35.39851 -33.81882 -31.84734 -31.28475 -30.04586 -27.59134 -26.80329 -24.68355 -23.89326 -23.23495 -21.20058 -20.70934 -20.69225 -19.20325 -18.49718 -17.55790 -16.89174 -16.68145 -16.11037 -15.88278 -15.58542 -15.36585 -15.14236 -14.80314 -14.63794 -14.32213 -14.07331 -13.93814 -13.67853 -13.25974 -13.18794 -13.13433 -13.00444 -12.59586 -12.49007 -12.22721 -12.02127 -11.98153 -11.89321 -11.87329 -11.55449 -11.37750 -11.14040 -10.55827 -10.36499 -10.09209 -9.44586 -8.71189 -7.87865 -5.33717 1.36346 1.48790 1.49681 1.60076 1.71331 2.16661 2.52281 3.00572 3.28738 3.65688 3.88398 3.96514 4.05067 4.12932 4.23829 4.33466 4.34121 4.43452 4.45569 4.59322 4.64051 4.71659 4.79600 4.82945 4.88950 4.92747 5.01354 5.05036 5.05841 5.14667 5.15373 5.28222 5.46045 5.58387 5.61979 5.64475 5.70478 5.74026 5.89266 5.98741 6.38955 7.00948 7.14288 7.59833 7.83459 8.37058 9.19527 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035750 B = 0.003256 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.034568 B = 8597.906421 C = 8901.622574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.105 4.105 4 C 0.138 3.862 5 N -0.633 5.633 6 C 0.072 3.928 7 C 0.696 3.304 8 O -0.636 6.636 9 N -0.727 5.727 10 C 0.180 3.820 11 C -0.122 4.122 12 C 0.145 3.855 13 N -0.609 5.609 14 C -0.265 4.265 15 H 0.067 0.933 16 C -0.050 4.050 17 N -0.936 5.936 18 Si 0.970 3.030 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.268 1.268 22 C 0.179 3.821 23 C -0.126 4.126 24 H 0.114 0.886 25 H 0.080 0.920 26 H 0.135 0.865 27 H 0.037 0.963 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.408 0.592 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.005 0.995 39 H 0.057 0.943 40 H 0.251 0.749 41 H 0.065 0.935 42 H -0.006 1.006 43 H 0.071 0.929 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.187 -20.750 -12.060 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.170 4.170 3 C -0.143 4.143 4 C 0.015 3.985 5 N -0.370 5.370 6 C -0.070 4.070 7 C 0.397 3.603 8 O -0.518 6.518 9 N -0.383 5.383 10 C 0.074 3.926 11 C -0.162 4.162 12 C 0.019 3.981 13 N -0.332 5.332 14 C -0.395 4.395 15 H 0.085 0.915 16 C -0.245 4.245 17 N -0.582 5.582 18 Si 0.798 3.202 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.193 1.193 22 C 0.053 3.947 23 C -0.166 4.166 24 H 0.132 0.868 25 H 0.099 0.901 26 H 0.153 0.847 27 H 0.056 0.944 28 H 0.105 0.895 29 H 0.130 0.870 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.246 0.754 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.023 0.977 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.012 0.988 43 H 0.090 0.910 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.538 -20.726 -11.515 23.972 hybrid contribution 0.161 1.234 0.099 1.248 sum 3.699 -19.492 -11.416 22.890 Atomic orbital electron populations 1.24025 0.96551 1.02051 1.01306 1.22976 0.95968 0.98365 0.99722 1.21073 0.98316 0.95496 0.99447 1.21346 0.94779 0.84169 0.98212 1.47159 1.25333 1.10722 1.53740 1.22000 0.83814 1.03734 0.97412 1.16191 0.83161 0.81130 0.79832 1.90885 1.25685 1.84298 1.50905 1.45293 1.26957 1.09696 1.56358 1.20553 0.94464 0.83916 0.93633 1.22220 0.98523 0.96684 0.98793 1.20949 0.90047 0.91706 0.95417 1.44345 1.21882 1.04642 1.62363 1.19517 1.33576 0.83663 1.02730 0.91496 1.25837 1.02553 1.01519 0.94600 1.70187 1.45870 1.37296 1.04829 0.85244 0.77182 0.79781 0.78014 1.21375 1.21681 1.19313 1.20565 0.91327 0.92209 0.90601 1.22244 0.96774 0.96267 1.01311 0.86829 0.90116 0.84746 0.94380 0.89466 0.86993 0.92490 0.91192 0.88282 0.90980 0.75414 0.92904 0.92670 0.91572 0.97672 0.92442 0.93971 0.91695 0.98831 0.91032 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.41 14.32 67.78 0.97 -2.44 16 2 C -0.15 -2.31 9.52 25.64 0.24 -2.07 16 3 C -0.10 -1.88 5.98 29.85 0.18 -1.70 16 4 C 0.14 2.55 5.39 86.38 0.47 3.01 16 5 N -0.63 -13.28 2.87 -864.93 -2.49 -15.76 16 6 C 0.07 0.83 10.20 127.77 1.30 2.13 16 7 C 0.70 21.33 8.24 179.06 1.48 22.81 16 8 O -0.64 -25.79 15.58 -4.00 -0.06 -25.85 16 9 N -0.73 -20.50 4.94 -457.17 -2.26 -22.76 16 10 C 0.18 6.43 2.42 45.12 0.11 6.54 16 11 C -0.12 -4.58 5.68 30.78 0.17 -4.40 16 12 C 0.15 6.51 6.50 86.36 0.56 7.07 16 13 N -0.61 -31.34 2.99 -699.09 -2.09 -33.43 16 14 C -0.26 -14.70 9.58 84.03 0.81 -13.90 16 15 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 16 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 17 N -0.94 -55.55 11.20 21.65 0.24 -55.31 16 18 Si 0.97 44.63 29.59 68.60 2.03 46.66 16 19 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 C 0.18 8.70 5.30 86.36 0.46 9.16 16 23 C -0.13 -4.59 5.55 30.68 0.17 -4.42 16 24 H 0.11 1.48 8.06 -2.91 -0.02 1.45 16 25 H 0.08 1.60 7.84 -2.91 -0.02 1.57 16 26 H 0.13 1.35 8.06 -2.91 -0.02 1.32 16 27 H 0.04 0.95 7.79 -2.39 -0.02 0.93 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 29 H 0.11 1.23 8.07 -2.39 -0.02 1.21 16 30 H 0.06 1.40 7.42 -2.39 -0.02 1.38 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 0.65 8.07 -2.39 -0.02 0.63 16 33 H 0.07 0.78 6.36 -2.39 -0.02 0.77 16 34 H 0.41 8.69 6.33 -92.71 -0.59 8.11 16 35 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 40 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 41 H 0.06 3.49 6.06 -2.39 -0.01 3.48 16 42 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -72.40 353.02 3.08 -69.32 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.37 Total: 17.70 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 7.33 Total: 19.43 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -6.60 Total: -127.26 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.06 Total: -25.85 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -72.40 3.08 -69.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615538677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.976 kcal (2) G-P(sol) polarization free energy of solvation -72.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds