Wall clock time and date at job start Tue Mar 31 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47257 * 2 1 4 4 C 1.52997 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.47174 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47132 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46753 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47098 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47452 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47336 * 179.97438 * 9 8 7 11 11 O 1.21300 * 119.99940 * 359.97438 * 10 9 8 12 12 N 1.34769 * 120.00121 * 180.02562 * 10 9 8 13 13 C 1.37098 * 120.00222 * 180.02562 * 12 10 9 14 14 H 1.07996 * 120.00531 * 140.10332 * 13 12 10 15 15 C 1.38954 * 119.99674 * 320.09632 * 13 12 10 16 16 N 1.31418 * 119.99861 * 161.97647 * 15 13 12 17 17 Si 1.86793 * 120.00192 * 341.98302 * 15 13 12 18 18 H 1.48506 * 109.47296 * 93.79749 * 17 15 13 19 19 H 1.48499 * 109.47201 * 213.79800 * 17 15 13 20 20 H 1.48507 * 109.47145 * 333.79704 * 17 15 13 21 21 C 1.46501 * 120.00117 * 359.97438 * 12 10 9 22 22 C 1.52997 * 117.49958 * 182.28822 * 21 12 10 23 23 C 1.53002 * 60.00407 * 252.51456 * 22 21 12 24 24 H 1.09002 * 109.47348 * 59.99104 * 1 2 3 25 25 H 1.08993 * 109.47823 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46948 * 299.99923 * 1 2 3 27 27 H 1.09007 * 109.46501 * 240.00347 * 2 1 3 28 28 H 1.08995 * 109.46997 * 120.00801 * 2 1 3 29 29 H 1.09004 * 109.46584 * 60.00667 * 3 2 1 30 30 H 1.08995 * 109.47771 * 300.00327 * 3 2 1 31 31 H 1.09004 * 109.46956 * 60.00889 * 4 3 2 32 32 H 1.08999 * 109.47789 * 300.00339 * 4 3 2 33 33 H 1.08997 * 109.47033 * 59.99670 * 5 4 3 34 34 H 1.09005 * 109.46506 * 300.00128 * 5 4 3 35 35 H 1.08995 * 109.47292 * 59.99995 * 6 5 4 36 36 H 1.08995 * 109.46878 * 299.99984 * 6 5 4 37 37 H 1.08998 * 109.47617 * 60.00054 * 7 6 5 38 38 H 1.09001 * 109.47402 * 299.99304 * 7 6 5 39 39 H 1.09000 * 109.47285 * 59.99313 * 8 7 6 40 40 H 1.09008 * 109.46781 * 299.99999 * 8 7 6 41 41 H 1.08999 * 109.46642 * 300.00169 * 9 8 7 42 42 H 1.08997 * 109.47040 * 59.99309 * 9 8 7 43 43 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 44 44 H 1.08993 * 115.54918 * 328.00207 * 21 12 10 45 45 H 1.08997 * 117.50196 * 0.02562 * 22 21 12 46 46 H 1.09002 * 117.50222 * 145.02543 * 22 21 12 47 47 H 1.08997 * 117.49701 * 252.51735 * 23 22 21 48 48 H 1.08995 * 117.51886 * 107.48034 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8848 -0.0013 7 6 6.1201 4.3273 -0.0013 8 6 7.6502 4.3273 -0.0019 9 6 8.1602 5.7697 -0.0013 10 6 9.6672 5.7697 -0.0013 11 8 10.2736 4.7192 -0.0013 12 7 10.3411 6.9368 -0.0002 13 6 11.7121 6.9368 -0.0008 14 1 12.2519 7.6550 -0.6000 15 6 12.4071 6.0127 0.7699 16 7 13.6728 5.7657 0.5169 17 14 11.5423 5.1216 2.1654 18 1 11.0169 3.8228 1.6730 19 1 12.5049 4.8795 3.2699 20 1 10.4175 5.9541 2.6626 21 6 9.6087 8.2056 0.0003 22 6 10.4299 9.4954 -0.0527 23 6 9.7269 9.0889 1.2441 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6767 1.9564 -0.8899 31 1 3.9329 0.9288 -0.8910 32 1 3.9338 0.9284 0.8890 33 1 3.7172 3.3982 0.8904 34 1 3.7164 3.3992 -0.8896 35 1 5.9727 2.3717 -0.8919 36 1 5.9741 2.3703 0.8880 37 1 5.7576 4.8409 0.8891 38 1 5.7562 4.8414 -0.8909 39 1 8.0131 3.8135 -0.8921 40 1 8.0138 3.8133 0.8879 41 1 7.7965 6.2840 -0.8908 42 1 7.7972 6.2831 0.8891 43 1 14.1578 5.1204 1.0547 44 1 8.6516 8.1961 -0.5211 45 1 11.5151 9.4000 -0.0884 46 1 10.0132 10.3349 -0.6093 47 1 8.8477 9.6609 1.5404 48 1 10.3493 8.7259 2.0619 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706732702.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:36 Heat of formation + Delta-G solvation = -45.822627 kcal Electronic energy + Delta-G solvation = -21919.757640 eV Core-core repulsion = 18781.362418 eV Total energy + Delta-G solvation = -3138.395222 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.16988 -37.16605 -36.47856 -35.24251 -33.07042 -32.58358 -31.40173 -29.78798 -26.89692 -24.87359 -23.17440 -21.94989 -21.52645 -21.27781 -20.91735 -20.63245 -18.97080 -16.95056 -16.34238 -16.14326 -15.63442 -15.20326 -14.53715 -14.34405 -14.20454 -13.78073 -13.73620 -13.39444 -13.19835 -12.90662 -12.75747 -12.47442 -12.27922 -11.89390 -11.72316 -11.53643 -11.40289 -11.24987 -11.15662 -11.08388 -10.84976 -10.79818 -10.62126 -10.59185 -10.34743 -10.25654 -10.23746 -9.98488 -9.89660 -9.56450 -8.48022 -8.39870 -7.45342 -6.13492 -3.90879 3.32719 3.51740 3.72881 3.86739 4.32315 4.46618 4.51940 4.61886 4.70265 4.77715 4.88858 4.95538 5.08237 5.14371 5.19913 5.34100 5.37250 5.39631 5.45793 5.47382 5.57730 5.58913 5.62638 5.64830 5.72359 5.74460 5.78583 5.84045 5.85475 5.92599 5.99104 6.02783 6.10285 6.12675 6.13576 6.16806 6.24784 6.33486 6.38158 6.59931 6.69599 6.73742 6.85902 7.88673 7.99907 8.81444 8.95804 9.47545 9.86089 10.90163 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025186 B = 0.002820 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.469079 B = 9926.059879 C =10633.060224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.121 4.121 7 C -0.118 4.118 8 C -0.103 4.103 9 C -0.132 4.132 10 C 0.445 3.555 11 O -0.542 6.542 12 N -0.438 5.438 13 C -0.349 4.349 14 H 0.095 0.905 15 C 0.086 3.914 16 N -0.870 5.870 17 Si 0.924 3.076 18 H -0.251 1.251 19 H -0.317 1.317 20 H -0.285 1.285 21 C 0.065 3.935 22 C -0.174 4.174 23 C -0.200 4.200 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.271 0.729 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.634 -3.313 -0.221 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.159 4.159 5 C -0.157 4.157 6 C -0.158 4.158 7 C -0.156 4.156 8 C -0.141 4.141 9 C -0.172 4.172 10 C 0.236 3.764 11 O -0.426 6.426 12 N -0.158 5.158 13 C -0.474 4.474 14 H 0.113 0.887 15 C -0.122 4.122 16 N -0.505 5.505 17 Si 0.757 3.243 18 H -0.177 1.177 19 H -0.248 1.248 20 H -0.211 1.211 21 C -0.040 4.040 22 C -0.211 4.211 23 C -0.239 4.239 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.143 -3.928 -0.220 22.490 hybrid contribution -0.272 -0.201 0.743 0.816 sum -22.415 -4.129 0.523 22.799 Atomic orbital electron populations 1.21785 0.96063 1.01466 1.01743 1.21552 0.95699 0.97179 1.01987 1.21634 0.95721 0.96519 1.01927 1.21632 0.95010 0.97218 1.02071 1.21612 0.95818 0.96398 1.01824 1.21604 0.94731 0.97256 1.02228 1.21624 0.95935 0.96416 1.01620 1.21322 0.93600 0.95811 1.03353 1.21589 0.94454 0.98568 1.02625 1.20357 0.89151 0.84521 0.82371 1.90502 1.69298 1.30675 1.52085 1.43194 1.05992 1.01853 1.64778 1.18784 0.78214 1.21558 1.28863 0.88722 1.25348 0.94769 0.95294 0.96808 1.69738 1.10172 1.32529 1.38085 0.86165 0.77907 0.82324 0.77926 1.17676 1.24763 1.21110 1.21794 0.96799 0.84332 1.01114 1.23121 1.01267 0.96568 1.00157 1.23267 1.02751 1.04616 0.93231 0.92815 0.92909 0.92817 0.92100 0.92108 0.92141 0.92129 0.92058 0.92088 0.92198 0.92173 0.91974 0.92052 0.92308 0.92203 0.91320 0.91744 0.90294 0.90536 0.91898 0.87141 0.87149 0.89472 0.89555 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.13 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 4 C -0.12 -1.03 5.21 -26.73 -0.14 -1.17 16 5 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 6 C -0.12 -1.35 5.21 -26.73 -0.14 -1.48 16 7 C -0.12 -1.46 5.21 -26.73 -0.14 -1.60 16 8 C -0.10 -1.69 4.50 -26.73 -0.12 -1.81 16 9 C -0.13 -2.34 4.33 -27.89 -0.12 -2.46 16 10 C 0.44 10.69 5.88 -10.99 -0.06 10.63 16 11 O -0.54 -15.18 10.82 5.54 0.06 -15.12 16 12 N -0.44 -10.66 2.56 -107.73 -0.28 -10.94 16 13 C -0.35 -9.92 8.77 -14.93 -0.13 -10.05 16 14 H 0.10 2.80 6.96 -52.49 -0.37 2.44 16 15 C 0.09 2.59 4.90 -17.46 -0.09 2.51 16 16 N -0.87 -27.11 13.96 55.50 0.77 -26.34 16 17 Si 0.92 25.33 24.53 -169.99 -4.17 21.16 16 18 H -0.25 -7.15 6.10 56.52 0.34 -6.81 16 19 H -0.32 -8.57 7.11 56.52 0.40 -8.17 16 20 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 21 C 0.07 1.24 5.85 -67.93 -0.40 0.84 16 22 C -0.17 -3.02 9.79 -26.73 -0.26 -3.28 16 23 C -0.20 -3.45 10.37 -26.73 -0.28 -3.73 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 40 H 0.06 1.17 8.10 -51.92 -0.42 0.75 16 41 H 0.08 1.20 7.57 -51.93 -0.39 0.81 16 42 H 0.08 1.25 8.11 -51.93 -0.42 0.83 16 43 H 0.27 8.00 8.31 -40.82 -0.34 7.66 16 44 H 0.11 1.73 6.99 -51.93 -0.36 1.37 16 45 H 0.11 2.21 6.49 -51.93 -0.34 1.87 16 46 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 47 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -32.96 375.67 -9.42 -42.38 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -9.52 Total: -1.29 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -1.95 Total: -15.52 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.50 Total: -37.28 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.06 Total: -15.12 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -4.17 Total: 21.16 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.96 -9.42 -42.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706732702.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.443 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds