Wall clock time and date at job start Tue Mar 31 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47327 * 2 1 4 4 C 1.53001 * 109.47085 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46953 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47047 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47081 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47672 * 305.00349 * 7 6 5 9 9 C 1.53003 * 109.47305 * 65.00164 * 7 6 5 10 10 C 1.52999 * 109.47151 * 185.00052 * 7 6 5 11 11 C 1.50700 * 109.47381 * 175.00082 * 10 7 6 12 12 O 1.21297 * 120.00023 * 0.02562 * 11 10 7 13 13 N 1.34773 * 120.00437 * 180.02562 * 11 10 7 14 14 C 1.37093 * 120.00322 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99901 * 140.09870 * 14 13 11 16 16 C 1.38944 * 119.99939 * 320.10349 * 14 13 11 17 17 N 1.31417 * 120.00439 * 161.97824 * 16 14 13 18 18 Si 1.86797 * 120.00183 * 341.97719 * 16 14 13 19 19 H 1.48506 * 109.47119 * 93.80114 * 18 16 14 20 20 H 1.48506 * 109.47176 * 213.80074 * 18 16 14 21 21 H 1.48498 * 109.46953 * 333.80074 * 18 16 14 22 22 C 1.46502 * 119.99941 * 359.97438 * 13 11 10 23 23 C 1.53003 * 117.50258 * 182.28767 * 22 13 11 24 24 C 1.52997 * 117.49889 * 113.66340 * 22 13 11 25 25 H 1.09010 * 109.47046 * 60.00665 * 1 2 3 26 26 H 1.09001 * 109.47740 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47673 * 300.00896 * 1 2 3 28 28 H 1.08996 * 109.47246 * 239.98917 * 2 1 3 29 29 H 1.09007 * 109.46759 * 119.99777 * 2 1 3 30 30 H 1.08985 * 109.47395 * 59.99409 * 3 2 1 31 31 H 1.09005 * 109.46407 * 299.99187 * 3 2 1 32 32 H 1.08996 * 109.47395 * 59.98974 * 4 3 2 33 33 H 1.09002 * 109.46517 * 299.99350 * 4 3 2 34 34 H 1.09002 * 109.47391 * 59.99581 * 5 4 3 35 35 H 1.09002 * 109.47126 * 299.99159 * 5 4 3 36 36 H 1.09002 * 109.46931 * 59.99833 * 6 5 4 37 37 H 1.08994 * 109.47192 * 299.99881 * 6 5 4 38 38 H 1.09001 * 109.46605 * 59.99530 * 9 7 6 39 39 H 1.08993 * 109.47488 * 179.97438 * 9 7 6 40 40 H 1.09004 * 109.47098 * 300.00285 * 9 7 6 41 41 H 1.09001 * 109.47081 * 55.00518 * 10 7 6 42 42 H 1.09005 * 109.47340 * 295.00373 * 10 7 6 43 43 H 0.96990 * 120.00915 * 179.97438 * 17 16 14 44 44 H 1.08999 * 115.54871 * 327.99917 * 22 13 11 45 45 H 1.08995 * 117.49190 * 0.02562 * 23 22 13 46 46 H 1.09001 * 117.49691 * 145.02036 * 23 22 13 47 47 H 1.09001 * 117.50234 * 214.98150 * 24 22 13 48 48 H 1.09005 * 117.50050 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.6100 2.8848 -0.0013 7 6 6.1201 4.3273 -0.0026 8 1 5.6854 4.8657 -0.8448 9 6 5.7154 5.0126 1.3042 10 6 7.6449 4.3290 -0.1283 11 6 8.1371 5.7479 -0.2531 12 8 7.3461 6.6674 -0.2420 13 7 9.4561 5.9952 -0.3770 14 6 9.9040 7.2860 -0.4899 15 1 10.8054 7.5914 0.0205 16 6 9.1980 8.2012 -1.2610 17 7 9.3994 9.4899 -1.0999 18 14 7.9626 7.6001 -2.5266 19 1 6.6081 7.5654 -1.9186 20 1 7.9589 8.5215 -3.6912 21 1 8.3386 6.2357 -2.9760 22 6 10.4116 4.8847 -0.3898 23 6 11.8987 5.2331 -0.4792 24 6 11.1805 4.6292 -1.6876 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8898 28 1 1.8933 -0.5140 -0.8898 29 1 1.8932 -0.5138 0.8901 30 1 1.6767 1.9563 0.8898 31 1 1.6767 1.9562 -0.8901 32 1 3.9330 0.9286 -0.8907 33 1 3.9336 0.9285 0.8892 34 1 3.7170 3.3990 0.8887 35 1 3.7164 3.3984 -0.8914 36 1 5.9733 2.3705 -0.8911 37 1 5.9734 2.3714 0.8889 38 1 6.1500 4.4742 2.1464 39 1 6.0791 6.0400 1.3035 40 1 4.6290 5.0113 1.3938 41 1 7.9371 3.7640 -1.0135 42 1 8.0830 3.8690 0.7574 43 1 8.9069 10.1288 -1.6384 44 1 10.1326 4.0176 0.2089 45 1 12.1662 6.2886 -0.5280 46 1 12.5984 4.5952 0.0610 47 1 11.4077 3.5941 -1.9426 48 1 10.9752 5.2871 -2.5321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727667909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:09 Heat of formation + Delta-G solvation = -39.271913 kcal Electronic energy + Delta-G solvation = -22693.483532 eV Core-core repulsion = 19555.372370 eV Total energy + Delta-G solvation = -3138.111162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.32450 -37.31957 -36.44867 -35.25166 -32.91698 -32.14653 -31.39685 -28.56410 -27.32500 -25.02832 -24.03054 -22.01771 -21.65936 -21.23923 -21.02750 -19.85366 -18.82419 -16.94635 -16.22346 -16.06918 -15.33233 -15.03262 -14.54737 -14.35467 -14.05428 -13.81866 -13.48193 -13.35056 -13.17492 -12.82148 -12.57544 -12.44217 -12.16471 -11.85348 -11.56459 -11.54787 -11.46648 -11.17155 -11.10096 -10.97459 -10.87569 -10.64639 -10.61660 -10.31958 -10.23482 -10.21940 -10.13320 -9.97051 -9.88152 -9.56249 -8.47328 -8.34369 -7.43334 -6.13269 -3.90786 3.33093 3.51901 3.72791 3.86593 4.34373 4.51927 4.55507 4.69840 4.70258 4.86064 5.00027 5.06223 5.16035 5.22233 5.26444 5.41886 5.45228 5.45754 5.52640 5.55057 5.60765 5.67971 5.71414 5.78064 5.80251 5.81754 5.88460 5.97536 5.99131 6.01891 6.07114 6.13074 6.16571 6.16734 6.25204 6.29309 6.35992 6.41463 6.53192 6.69630 6.79904 6.85700 7.01355 7.88736 8.00248 8.81850 8.96562 9.47728 9.86680 10.90293 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.003576 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.823961 B = 7827.619174 C = 8442.796164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.074 4.074 8 H 0.072 0.928 9 C -0.150 4.150 10 C -0.129 4.129 11 C 0.448 3.552 12 O -0.538 6.538 13 N -0.438 5.438 14 C -0.348 4.348 15 H 0.095 0.905 16 C 0.087 3.913 17 N -0.871 5.871 18 Si 0.923 3.077 19 H -0.250 1.250 20 H -0.318 1.318 21 H -0.286 1.286 22 C 0.066 3.934 23 C -0.174 4.174 24 C -0.200 4.200 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.271 0.729 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.018 -18.356 1.774 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.159 4.159 6 C -0.151 4.151 7 C -0.093 4.093 8 H 0.091 0.909 9 C -0.207 4.207 10 C -0.169 4.169 11 C 0.239 3.761 12 O -0.421 6.421 13 N -0.159 5.159 14 C -0.474 4.474 15 H 0.112 0.888 16 C -0.121 4.121 17 N -0.506 5.506 18 Si 0.756 3.244 19 H -0.176 1.176 20 H -0.248 1.248 21 H -0.212 1.212 22 C -0.040 4.040 23 C -0.211 4.211 24 C -0.239 4.239 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.437 -17.690 1.771 20.128 hybrid contribution -0.331 -0.284 -0.727 0.847 sum -9.768 -17.974 1.044 20.484 Atomic orbital electron populations 1.21785 0.96103 1.01385 1.01807 1.21545 0.95675 0.97231 1.01850 1.21642 0.95810 0.96409 1.02056 1.21616 0.94976 0.97316 1.01771 1.21650 0.95769 0.96134 1.02308 1.21663 0.95138 0.96804 1.01502 1.20859 0.93828 0.94912 0.99738 0.90916 1.21960 1.00047 1.03053 0.95627 1.21662 0.96640 0.96166 1.02450 1.20294 0.83137 0.90632 0.82033 1.90469 1.53627 1.45789 1.52241 1.43204 1.03497 1.05137 1.64019 1.18776 1.13786 0.82866 1.31928 0.88766 1.25330 0.96305 0.94433 0.96036 1.69733 1.41382 1.01254 1.38229 0.86174 0.84058 0.77048 0.77088 1.17588 1.24847 1.21169 1.21789 0.89604 0.92734 0.99887 1.23122 0.93753 1.03000 1.01257 1.23264 1.06170 1.00703 0.93727 0.92803 0.92970 0.92793 0.92178 0.92175 0.92080 0.92101 0.92251 0.92210 0.91670 0.92143 0.92381 0.92207 0.93924 0.89972 0.93560 0.90596 0.90312 0.91904 0.87196 0.87150 0.89488 0.89576 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.15 0.37 -0.71 16 2 C -0.13 -0.97 5.93 -26.73 -0.16 -1.13 16 3 C -0.12 -1.06 5.21 -26.73 -0.14 -1.20 16 4 C -0.12 -1.13 5.21 -26.73 -0.14 -1.27 16 5 C -0.12 -1.37 4.97 -26.73 -0.13 -1.51 16 6 C -0.11 -1.42 4.68 -26.73 -0.13 -1.54 16 7 C -0.07 -1.22 2.04 -90.62 -0.18 -1.40 16 8 H 0.07 1.36 7.96 -51.93 -0.41 0.94 16 9 C -0.15 -2.49 8.69 37.16 0.32 -2.17 16 10 C -0.13 -2.27 3.81 -27.88 -0.11 -2.38 16 11 C 0.45 10.53 5.59 -10.99 -0.06 10.47 16 12 O -0.54 -14.54 8.81 5.54 0.05 -14.49 16 13 N -0.44 -10.55 2.56 -107.73 -0.28 -10.83 16 14 C -0.35 -9.81 8.77 -14.94 -0.13 -9.94 16 15 H 0.09 2.78 6.96 -52.48 -0.37 2.41 16 16 C 0.09 2.60 4.90 -17.47 -0.09 2.52 16 17 N -0.87 -26.97 13.96 55.50 0.77 -26.20 16 18 Si 0.92 25.10 24.53 -169.99 -4.17 20.93 16 19 H -0.25 -7.04 6.10 56.52 0.34 -6.69 16 20 H -0.32 -8.57 7.11 56.52 0.40 -8.17 16 21 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 22 C 0.07 1.24 5.85 -67.93 -0.40 0.84 16 23 C -0.17 -3.02 9.80 -26.73 -0.26 -3.28 16 24 C -0.20 -3.44 10.37 -26.73 -0.28 -3.72 16 25 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.06 0.54 8.14 -51.94 -0.42 0.11 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.75 6.57 -51.93 -0.34 0.41 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.69 5.95 -51.93 -0.31 1.38 16 40 H 0.05 0.68 6.57 -51.93 -0.34 0.34 16 41 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 42 H 0.08 1.22 7.57 -51.93 -0.39 0.82 16 43 H 0.27 7.95 8.31 -40.82 -0.34 7.62 16 44 H 0.11 1.72 6.99 -51.93 -0.36 1.36 16 45 H 0.11 2.20 6.49 -51.93 -0.34 1.87 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 48 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -32.18 367.64 -8.83 -41.01 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -9.24 Total: 0.45 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -1.51 Total: -16.41 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.50 Total: -37.03 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.05 Total: -14.49 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -4.17 Total: 20.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.18 -8.83 -41.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727667909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.735 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds