Wall clock time and date at job start Tue Mar 31 2020 06:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46843 * 2 1 4 4 C 1.53000 * 109.46843 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47033 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47033 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47350 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46926 * 54.99743 * 7 6 5 9 9 C 1.53004 * 109.47000 * 295.00313 * 7 6 5 10 10 C 1.52997 * 109.47590 * 175.00025 * 7 6 5 11 11 C 1.50692 * 109.47295 * 185.00287 * 10 7 6 12 12 O 1.21291 * 120.00128 * 359.97438 * 11 10 7 13 13 N 1.34778 * 120.00271 * 180.02562 * 11 10 7 14 14 C 1.37098 * 120.00084 * 179.97438 * 13 11 10 15 15 H 1.08005 * 119.99562 * 140.27736 * 14 13 11 16 16 C 1.38944 * 120.00083 * 320.26733 * 14 13 11 17 17 N 1.31413 * 120.00072 * 158.86874 * 16 14 13 18 18 Si 1.86807 * 120.00152 * 338.87370 * 16 14 13 19 19 H 1.48502 * 109.46905 * 93.60122 * 18 16 14 20 20 H 1.48491 * 109.47042 * 213.60305 * 18 16 14 21 21 H 1.48499 * 109.46846 * 333.60181 * 18 16 14 22 22 C 1.46504 * 119.99677 * 359.97438 * 13 11 10 23 23 C 1.53000 * 117.49772 * 182.11260 * 22 13 11 24 24 C 1.52992 * 117.49773 * 113.49000 * 22 13 11 25 25 H 1.09006 * 109.47015 * 300.00123 * 1 2 3 26 26 H 1.08997 * 109.47208 * 60.00032 * 1 2 3 27 27 H 1.08996 * 109.47412 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47060 * 240.00045 * 2 1 3 29 29 H 1.09000 * 109.46950 * 119.99242 * 2 1 3 30 30 H 1.08998 * 109.47698 * 60.00135 * 3 2 1 31 31 H 1.08997 * 109.47193 * 299.99977 * 3 2 1 32 32 H 1.09001 * 109.47211 * 60.00299 * 4 3 2 33 33 H 1.08997 * 109.47208 * 299.99968 * 4 3 2 34 34 H 1.08997 * 109.47368 * 300.00201 * 5 4 3 35 35 H 1.09006 * 109.47051 * 60.00229 * 5 4 3 36 36 H 1.09005 * 109.47511 * 300.00265 * 6 5 4 37 37 H 1.09000 * 109.47675 * 60.00367 * 6 5 4 38 38 H 1.08994 * 109.46646 * 299.99739 * 9 7 6 39 39 H 1.08997 * 109.46871 * 59.99598 * 9 7 6 40 40 H 1.08993 * 109.46920 * 179.97438 * 9 7 6 41 41 H 1.09001 * 109.46952 * 305.00198 * 10 7 6 42 42 H 1.08994 * 109.46718 * 64.99671 * 10 7 6 43 43 H 0.97003 * 120.00062 * 180.02562 * 17 16 14 44 44 H 1.08995 * 115.54919 * 327.81910 * 22 13 11 45 45 H 1.09000 * 117.49926 * 0.02562 * 23 22 13 46 46 H 1.08999 * 117.49542 * 145.02138 * 23 22 13 47 47 H 1.09001 * 117.50145 * 214.97938 * 24 22 13 48 48 H 1.08999 * 117.50224 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8851 -0.0013 6 6 5.6099 2.8851 -0.0013 7 6 6.1200 4.3276 -0.0013 8 1 5.6853 4.8666 0.8405 9 6 5.7152 5.0116 -1.3086 10 6 7.6448 4.3295 0.1244 11 6 8.1369 5.7484 0.2480 12 8 7.3459 6.6678 0.2362 13 7 9.4560 5.9959 0.3706 14 6 9.9038 7.2869 0.4825 15 1 10.7088 7.5222 1.1630 16 6 9.3220 8.2925 -0.2797 17 7 9.4311 9.5474 0.0949 18 14 8.3847 7.8607 -1.8368 19 1 6.9413 7.7125 -1.5207 20 1 8.5637 8.9424 -2.8383 21 1 8.9041 6.5839 -2.3891 22 6 10.4115 4.8854 0.3843 23 6 11.8903 5.2282 0.5759 24 6 11.3814 4.7735 -0.7935 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9289 -0.8909 33 1 3.9336 0.9286 0.8891 34 1 3.7162 3.3987 -0.8912 35 1 3.7170 3.3992 0.8888 36 1 5.9733 2.3716 0.8889 37 1 5.9733 2.3709 -0.8910 38 1 6.1498 4.4726 -2.1504 39 1 4.6289 5.0103 -1.3981 40 1 6.0781 6.0394 -1.3084 41 1 7.9370 3.7651 1.0100 42 1 8.0828 3.8687 -0.7609 43 1 9.0247 10.2494 -0.4371 44 1 10.0481 3.9581 0.8269 45 1 12.1522 6.2798 0.6921 46 1 12.4999 4.5262 1.1447 47 1 11.6565 3.7724 -1.1257 48 1 11.3085 5.5258 -1.5789 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727667910.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:11 Heat of formation + Delta-G solvation = -37.937560 kcal Electronic energy + Delta-G solvation = -22726.375034 eV Core-core repulsion = 19588.321734 eV Total energy + Delta-G solvation = -3138.053300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.29747 -37.31255 -36.43449 -35.23332 -32.91251 -32.12964 -31.39186 -28.55538 -27.35670 -25.01179 -24.03269 -22.02136 -21.64499 -21.23397 -21.02190 -19.86264 -18.78872 -16.89899 -16.18661 -16.07681 -15.46523 -15.02964 -14.38656 -14.24071 -14.08894 -13.97380 -13.67746 -13.24940 -13.08955 -12.82192 -12.50964 -12.40647 -12.28697 -11.92831 -11.61479 -11.47043 -11.40694 -11.15721 -11.07824 -10.92223 -10.83319 -10.70616 -10.57824 -10.32345 -10.23093 -10.19327 -10.16122 -9.93796 -9.91496 -9.58922 -8.45348 -8.28319 -7.44490 -6.15472 -3.89128 3.33640 3.50791 3.67514 3.85087 4.34972 4.51817 4.55949 4.68226 4.70354 4.86317 5.00395 5.06640 5.16553 5.21408 5.26673 5.40075 5.45857 5.48374 5.52191 5.54948 5.61716 5.68350 5.73365 5.77969 5.79656 5.83231 5.88752 5.97977 5.99078 6.03795 6.08270 6.13612 6.16792 6.17141 6.24805 6.30262 6.36652 6.41086 6.53306 6.70707 6.81304 6.86048 7.00997 7.88647 8.01601 8.82960 8.98314 9.48349 9.88980 10.89240 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024047 B = 0.003561 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.100134 B = 7861.417456 C = 8578.207953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.113 4.113 7 C -0.072 4.072 8 H 0.076 0.924 9 C -0.161 4.161 10 C -0.129 4.129 11 C 0.450 3.550 12 O -0.538 6.538 13 N -0.439 5.439 14 C -0.351 4.351 15 H 0.094 0.906 16 C 0.092 3.908 17 N -0.867 5.867 18 Si 0.910 3.090 19 H -0.243 1.243 20 H -0.314 1.314 21 H -0.282 1.282 22 C 0.066 3.934 23 C -0.174 4.174 24 C -0.200 4.200 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.040 0.960 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.271 0.729 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.949 -18.275 -1.367 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.151 4.151 7 C -0.091 4.091 8 H 0.095 0.905 9 C -0.218 4.218 10 C -0.170 4.170 11 C 0.241 3.759 12 O -0.421 6.421 13 N -0.159 5.159 14 C -0.476 4.476 15 H 0.112 0.888 16 C -0.117 4.117 17 N -0.502 5.502 18 Si 0.742 3.258 19 H -0.170 1.170 20 H -0.245 1.245 21 H -0.208 1.208 22 C -0.040 4.040 23 C -0.212 4.212 24 C -0.239 4.239 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.377 -17.605 -1.365 19.993 hybrid contribution -0.169 -0.191 -0.814 0.853 sum -9.547 -17.796 -2.179 20.312 Atomic orbital electron populations 1.21786 0.96107 1.01382 1.01806 1.21545 0.95673 0.97237 1.01846 1.21642 0.95815 0.96402 1.02054 1.21618 0.94970 0.97333 1.01762 1.21648 0.95774 0.96112 1.02305 1.21666 0.95127 0.96827 1.01479 1.20835 0.93823 0.94863 0.99582 0.90520 1.22150 1.00294 1.03443 0.95945 1.21663 0.96662 0.96224 1.02431 1.20269 0.82699 0.90517 0.82452 1.90501 1.53674 1.45738 1.52212 1.43211 1.02981 1.05176 1.64571 1.18745 1.23099 0.80525 1.25247 0.88822 1.25283 0.94542 0.94279 0.97619 1.69766 1.42691 1.00294 1.37440 0.86517 0.82879 0.76543 0.79870 1.16953 1.24456 1.20771 1.21793 0.87673 0.92440 1.02099 1.23118 0.95692 1.03327 0.99015 1.23263 1.06002 1.01647 0.93009 0.92790 0.92805 0.92973 0.92190 0.92165 0.92068 0.92117 0.92255 0.92221 0.91750 0.92067 0.92299 0.92326 0.94042 0.93382 0.89727 0.90387 0.90552 0.91919 0.87220 0.87170 0.89502 0.89598 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -0.97 5.93 -26.73 -0.16 -1.12 16 3 C -0.12 -1.06 5.21 -26.73 -0.14 -1.20 16 4 C -0.12 -1.13 5.21 -26.73 -0.14 -1.27 16 5 C -0.12 -1.37 4.97 -26.73 -0.13 -1.50 16 6 C -0.11 -1.41 4.68 -26.73 -0.13 -1.54 16 7 C -0.07 -1.18 2.04 -90.62 -0.18 -1.37 16 8 H 0.08 1.38 7.96 -51.93 -0.41 0.97 16 9 C -0.16 -2.85 8.69 37.16 0.32 -2.52 16 10 C -0.13 -2.28 3.81 -27.89 -0.11 -2.39 16 11 C 0.45 10.59 5.64 -10.99 -0.06 10.53 16 12 O -0.54 -14.58 9.46 5.55 0.05 -14.52 16 13 N -0.44 -10.57 2.54 -107.74 -0.27 -10.84 16 14 C -0.35 -9.88 8.74 -14.94 -0.13 -10.01 16 15 H 0.09 2.76 6.96 -52.48 -0.37 2.39 16 16 C 0.09 2.72 4.81 -17.47 -0.08 2.64 16 17 N -0.87 -26.82 13.96 55.50 0.77 -26.05 16 18 Si 0.91 24.43 24.27 -169.99 -4.13 20.30 16 19 H -0.24 -6.64 4.84 56.52 0.27 -6.36 16 20 H -0.31 -8.41 7.11 56.52 0.40 -8.01 16 21 H -0.28 -7.33 7.11 56.52 0.40 -6.92 16 22 C 0.07 1.24 5.85 -67.93 -0.40 0.85 16 23 C -0.17 -3.02 9.79 -26.73 -0.26 -3.28 16 24 C -0.20 -3.46 10.37 -26.74 -0.28 -3.74 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.76 6.57 -51.93 -0.34 0.41 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.74 6.57 -51.93 -0.34 0.40 16 40 H 0.08 1.85 4.00 -51.93 -0.21 1.64 16 41 H 0.08 1.20 7.57 -51.93 -0.39 0.80 16 42 H 0.08 1.26 8.11 -51.93 -0.42 0.84 16 43 H 0.27 7.93 8.31 -40.82 -0.34 7.59 16 44 H 0.11 1.72 7.00 -51.93 -0.36 1.36 16 45 H 0.11 2.20 6.49 -51.93 -0.34 1.86 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 LS Contribution 364.74 15.07 5.50 5.50 Total: -1.00 -32.04 364.74 -8.79 -40.83 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -9.21 Total: 1.43 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -1.51 Total: -16.64 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.50 Total: -36.89 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.05 Total: -14.52 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -4.13 Total: 20.30 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.04 -8.79 -40.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727667910.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.894 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds