Wall clock time and date at job start Tue Mar 31 2020 05:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47476 * 2 1 4 4 C 1.50701 * 109.46990 * 239.99583 * 2 1 3 5 5 O 1.21280 * 119.99781 * 239.99897 * 4 2 1 6 6 N 1.34777 * 120.00115 * 60.00296 * 4 2 1 7 7 C 1.46492 * 120.00147 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47244 * 179.97438 * 7 6 4 9 9 C 1.53005 * 109.47452 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47088 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00496 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99572 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99958 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00219 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47122 * 90.00101 * 14 12 10 16 16 H 1.48503 * 109.46810 * 209.99897 * 14 12 10 17 17 H 1.48497 * 109.47042 * 330.00072 * 14 12 10 18 18 C 1.53002 * 109.46891 * 120.00007 * 2 1 3 19 19 C 1.52999 * 109.47628 * 59.99991 * 18 2 1 20 20 C 1.52997 * 109.47317 * 180.02562 * 19 18 2 21 21 C 1.53000 * 109.47060 * 59.99960 * 20 19 18 22 22 C 1.53002 * 109.47233 * 299.99657 * 21 20 19 23 23 C 1.52997 * 109.46817 * 60.00194 * 22 21 20 24 24 H 1.09004 * 109.47108 * 300.00285 * 1 2 3 25 25 H 1.09000 * 109.46870 * 60.00179 * 1 2 3 26 26 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47726 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46925 * 299.99787 * 3 2 1 29 29 H 1.08996 * 109.47340 * 59.99479 * 3 2 1 30 30 H 0.97003 * 119.99640 * 359.97438 * 6 4 2 31 31 H 1.09002 * 109.47243 * 300.00183 * 7 6 4 32 32 H 1.09001 * 109.47164 * 60.00251 * 7 6 4 33 33 H 1.09002 * 109.47153 * 300.00242 * 8 7 6 34 34 H 1.09001 * 109.47289 * 60.00326 * 8 7 6 35 35 H 1.09002 * 109.46935 * 300.00125 * 9 8 7 36 36 H 1.08998 * 109.47061 * 59.99332 * 9 8 7 37 37 H 0.96996 * 120.00371 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.47097 * 179.97438 * 18 2 1 39 39 H 1.08996 * 109.46929 * 59.99225 * 19 18 2 40 40 H 1.09002 * 109.46716 * 300.00030 * 19 18 2 41 41 H 1.09002 * 109.47153 * 299.99641 * 20 19 18 42 42 H 1.09001 * 109.46832 * 179.97438 * 20 19 18 43 43 H 1.08992 * 109.47399 * 59.99823 * 21 20 19 44 44 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 45 45 H 1.08993 * 109.47662 * 180.02562 * 22 21 20 46 46 H 1.09002 * 109.47075 * 300.00932 * 22 21 20 47 47 H 1.09002 * 109.47153 * 60.00231 * 23 22 21 48 48 H 1.09001 * 109.47289 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1190 6 7 1.7067 -0.2501 -2.4546 7 6 2.1955 -0.9404 -3.6506 8 6 1.6849 -0.2197 -4.8999 9 6 2.1948 -0.9411 -6.1492 10 6 1.6924 -0.2308 -7.3796 11 1 1.0712 0.6471 -7.2806 12 6 2.0259 -0.7017 -8.6319 13 7 1.5878 -0.0815 -9.7058 14 14 3.1010 -2.2197 -8.8032 15 1 2.2433 -3.4311 -8.8486 16 1 3.8928 -2.1265 -10.0560 17 1 4.0214 -2.3080 -7.6412 18 6 2.0399 -0.7213 1.2493 19 6 1.5299 -2.1638 1.2494 20 6 2.0394 -2.8848 2.4990 21 6 1.5288 -2.1633 3.7478 22 6 2.0389 -0.7208 3.7478 23 6 1.5295 0.0002 2.4982 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.1488 0.5384 -2.5436 31 1 3.2855 -0.9401 -3.6505 32 1 1.8324 -1.9682 -3.6508 33 1 0.5949 -0.2205 -4.8998 34 1 2.0475 0.8082 -4.9001 35 1 3.2848 -0.9407 -6.1495 36 1 1.8319 -1.9689 -6.1488 37 1 1.8221 -0.4129 -10.5867 38 1 3.1299 -0.7217 1.2491 39 1 1.8932 -2.6776 0.3594 40 1 0.4399 -2.1637 1.2494 41 1 3.1294 -2.8848 2.4994 42 1 1.6757 -3.9123 2.4992 43 1 0.4389 -2.1632 3.7474 44 1 1.8922 -2.6767 4.6381 45 1 1.6756 -0.2068 4.6377 46 1 3.1289 -0.7208 3.7482 47 1 0.4394 0.0003 2.4978 48 1 1.8932 1.0278 2.4979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766425283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:23 Heat of formation + Delta-G solvation = -86.725411 kcal Electronic energy + Delta-G solvation = -22816.459835 eV Core-core repulsion = 19676.290935 eV Total energy + Delta-G solvation = -3140.168900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.73428 -38.31383 -35.51965 -35.12754 -33.25917 -31.43523 -30.90399 -29.46211 -27.61719 -27.15644 -24.42573 -23.01966 -22.58210 -21.40727 -20.56188 -19.82040 -18.72108 -16.95939 -16.45228 -16.11133 -15.48165 -15.33326 -14.60706 -14.44409 -14.35758 -14.19010 -13.98666 -13.81428 -13.35193 -12.85158 -12.71738 -12.52334 -12.32598 -12.07033 -12.06094 -11.93215 -11.90543 -11.66967 -11.34950 -11.07055 -11.02765 -10.98260 -10.89330 -10.46209 -10.34802 -10.10912 -10.05210 -9.92789 -9.74217 -9.25983 -9.20307 -8.78363 -8.56183 -6.07053 -4.05750 2.77591 3.30676 3.35231 3.38496 3.42706 4.34396 4.43802 4.51304 4.52623 4.75949 4.79969 4.83629 5.08670 5.13968 5.25151 5.27056 5.29669 5.40028 5.40813 5.43961 5.47991 5.54126 5.56484 5.59734 5.66566 5.70138 5.81969 5.84875 5.87392 5.95213 5.99977 6.02139 6.04888 6.12897 6.18880 6.33028 6.41026 6.44695 6.51558 6.72491 6.81409 7.22223 7.35711 7.67650 7.76821 8.39350 8.49828 8.96783 9.55263 11.06193 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035591 B = 0.002958 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.526433 B = 9463.459392 C = 9926.364482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.143 4.143 4 C 0.518 3.482 5 O -0.540 6.540 6 N -0.725 5.725 7 C 0.114 3.886 8 C -0.113 4.113 9 C -0.011 4.011 10 C -0.522 4.522 11 H 0.072 0.928 12 C 0.066 3.934 13 N -0.903 5.903 14 Si 0.880 3.120 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.264 1.264 18 C -0.058 4.058 19 C -0.128 4.128 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.118 4.118 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.398 0.602 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.263 0.737 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.595 0.719 27.379 27.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.201 4.201 4 C 0.304 3.696 5 O -0.417 6.417 6 N -0.375 5.375 7 C -0.009 4.009 8 C -0.151 4.151 9 C -0.049 4.049 10 C -0.560 4.560 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.542 5.542 14 Si 0.707 3.293 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.189 1.189 18 C -0.077 4.077 19 C -0.165 4.165 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.155 4.155 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.232 0.768 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.079 -0.002 27.233 27.255 hybrid contribution 0.253 -0.361 -0.413 0.604 sum -0.826 -0.362 26.820 26.835 Atomic orbital electron populations 1.21975 0.92755 1.02884 1.02606 1.20817 0.97192 0.96427 0.93730 1.21920 1.01690 0.93740 1.02712 1.20514 0.80120 0.84421 0.84558 1.90616 1.38123 1.26394 1.86597 1.46194 1.53316 1.31999 1.06001 1.21631 0.99159 0.96514 0.83591 1.21699 1.00600 0.99583 0.93212 1.19500 0.96523 0.95860 0.93004 1.21096 1.32241 1.13571 0.89075 0.91021 1.25032 0.95663 0.96930 0.95859 1.69912 1.45811 1.40564 0.97925 0.86776 0.81229 0.83587 0.77713 1.20241 1.21364 1.18900 1.20904 1.00566 0.94678 0.91537 1.21895 1.00001 0.95272 0.99362 1.21500 1.00767 0.98650 0.94519 1.21554 1.00552 0.95722 0.97894 1.21514 1.00769 0.95766 0.97523 1.21734 1.00911 0.98861 0.94019 0.91244 0.92150 0.91729 0.92094 0.92023 0.91198 0.76782 0.91896 0.91905 0.92183 0.92157 0.96348 0.96780 0.92693 0.90766 0.89076 0.92571 0.92168 0.92397 0.92245 0.92519 0.92316 0.92131 0.91661 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 7.66 37.16 0.28 -0.95 16 2 C -0.08 -0.78 0.43 -155.66 -0.07 -0.85 16 3 C -0.14 -1.21 8.02 37.15 0.30 -0.91 16 4 C 0.52 7.15 6.19 -10.98 -0.07 7.08 16 5 O -0.54 -9.33 13.66 5.56 0.08 -9.26 16 6 N -0.72 -9.84 5.34 -60.30 -0.32 -10.16 16 7 C 0.11 1.89 5.67 -4.05 -0.02 1.86 16 8 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 11 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 12 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 14 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 18 C -0.06 -0.58 1.19 -90.62 -0.11 -0.69 16 19 C -0.13 -1.39 4.53 -26.73 -0.12 -1.52 16 20 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 21 C -0.12 -0.95 5.92 -26.73 -0.16 -1.10 16 22 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 23 C -0.12 -0.92 4.50 -26.73 -0.12 -1.04 16 24 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 25 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 26 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 29 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 30 H 0.40 4.47 7.31 -40.82 -0.30 4.18 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 36 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.09 1.27 5.51 -51.93 -0.29 0.98 16 40 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 48 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 LS Contribution 356.82 15.07 5.38 5.38 Total: -1.00 -31.52 356.82 -8.64 -40.16 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.80 Total: 0.01 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -1.08 Total: -16.25 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.45 Total: -37.17 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.52 -8.64 -40.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766425283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.563 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds