Wall clock time and date at job start Tue Mar 31 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47126 * 172.62490 * 3 2 1 5 5 C 1.53003 * 109.46776 * 184.99958 * 4 3 2 6 6 C 1.52997 * 109.47089 * 292.62990 * 3 2 1 7 7 N 1.46898 * 109.47392 * 66.92109 * 6 3 2 8 8 C 1.46902 * 110.99487 * 86.91092 * 7 6 3 9 9 C 1.50697 * 109.47310 * 285.29555 * 8 7 6 10 10 H 1.08001 * 120.00317 * 358.61997 * 9 8 7 11 11 C 1.37881 * 120.00346 * 178.62460 * 9 8 7 12 12 N 1.31512 * 119.99717 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00326 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46957 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47515 * 119.99367 * 13 11 9 16 16 H 1.48498 * 109.47116 * 239.99646 * 13 11 9 17 17 C 1.46892 * 111.00236 * 210.86417 * 7 6 3 18 18 C 1.52999 * 109.47434 * 66.05040 * 17 7 6 19 19 C 1.50696 * 109.47268 * 180.02562 * 18 17 7 20 20 O 1.20754 * 120.00210 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.99689 * 180.02562 * 19 18 17 22 22 C 1.53006 * 117.49371 * 223.74551 * 21 19 18 23 23 C 1.53000 * 117.49886 * 155.08771 * 21 19 18 24 24 H 1.08998 * 109.46739 * 178.65219 * 1 2 3 25 25 H 1.08997 * 109.47502 * 298.65005 * 1 2 3 26 26 H 1.09001 * 109.47094 * 58.65938 * 1 2 3 27 27 H 1.08999 * 109.47646 * 240.00172 * 2 1 3 28 28 H 1.09002 * 109.47059 * 119.99742 * 2 1 3 29 29 H 1.09004 * 109.46746 * 52.62780 * 3 2 1 30 30 H 1.08997 * 109.47679 * 304.99575 * 4 3 2 31 31 H 1.08995 * 109.47468 * 65.00355 * 4 3 2 32 32 H 1.08999 * 109.47098 * 60.00666 * 5 4 3 33 33 H 1.09003 * 109.47030 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.47578 * 299.99952 * 5 4 3 35 35 H 1.09008 * 109.46882 * 306.92819 * 6 3 2 36 36 H 1.09000 * 109.46987 * 186.92816 * 6 3 2 37 37 H 1.08995 * 109.47294 * 45.29853 * 8 7 6 38 38 H 1.09005 * 109.47325 * 165.29775 * 8 7 6 39 39 H 0.97001 * 120.00083 * 180.02562 * 12 11 9 40 40 H 1.09003 * 109.47386 * 306.05024 * 17 7 6 41 41 H 1.09006 * 109.47499 * 186.05354 * 17 7 6 42 42 H 1.09003 * 109.46847 * 59.99655 * 18 17 7 43 43 H 1.09005 * 109.46683 * 300.00186 * 18 17 7 44 44 H 1.08994 * 115.55518 * 9.40879 * 21 19 18 45 45 H 1.08992 * 117.50506 * 359.97438 * 22 21 19 46 46 H 1.09007 * 117.49540 * 145.02024 * 22 21 19 47 47 H 1.09003 * 117.49866 * 214.97706 * 23 21 19 48 48 H 1.09002 * 117.50028 * 359.97207 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5587 1.4465 0.1852 5 6 4.0534 2.8890 0.3101 6 6 1.6867 2.1084 -1.3314 7 7 0.2286 2.2542 -1.4344 8 6 -0.2205 3.5061 -0.8107 9 6 -0.1692 3.3669 0.6890 10 1 0.1425 2.4337 1.1344 11 6 -0.5202 4.4309 1.4926 12 7 -0.8993 5.5674 0.9503 13 14 -0.4558 4.2586 3.3515 14 1 0.0001 2.8906 3.7062 15 1 0.4921 5.2567 3.9086 16 1 -1.8089 4.4913 3.9173 17 6 -0.2108 2.1760 -2.8339 18 6 0.0532 0.7689 -3.3735 19 6 -0.3970 0.6889 -4.8094 20 8 -0.8797 1.6572 -5.3457 21 6 -0.2459 -0.5999 -5.5758 22 6 0.2837 -0.5118 -7.0085 23 6 -1.1910 -0.8351 -6.7557 24 1 -0.3633 -1.0274 -0.0242 25 1 -0.3634 0.4927 0.9018 26 1 -0.3633 0.5345 -0.8777 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5729 1.9930 0.8167 30 1 3.8160 0.8947 1.0892 31 1 4.0309 0.9738 -0.6759 32 1 3.5812 3.3618 1.1712 33 1 5.1354 2.8919 0.4415 34 1 3.7961 3.4410 -0.5939 35 1 2.0490 1.4913 -2.1537 36 1 2.1546 3.0916 -1.3814 37 1 0.4317 4.3218 -1.1224 38 1 -1.2434 3.7200 -1.1208 39 1 -1.1459 6.3161 1.5156 40 1 0.3415 2.9030 -3.4293 41 1 -1.2773 2.3935 -2.8926 42 1 -0.4992 0.0419 -2.7781 43 1 1.1197 0.5515 -3.3148 44 1 0.0457 -1.4674 -4.9839 45 1 0.5224 0.4782 -7.3970 46 1 0.9234 -1.3217 -7.3592 47 1 -1.5209 -1.8575 -6.9403 48 1 -1.9224 -0.0579 -6.9775 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767413710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:59 Heat of formation + Delta-G solvation = -20.731623 kcal Electronic energy + Delta-G solvation = -23510.393684 eV Core-core repulsion = 20373.086489 eV Total energy + Delta-G solvation = -3137.307195 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.91368 -38.13414 -36.20113 -34.79239 -32.75602 -31.36158 -30.85682 -27.43712 -26.80230 -24.99875 -23.95212 -22.65399 -21.90996 -21.29742 -20.17631 -19.36077 -19.13254 -16.78996 -16.30763 -15.60055 -15.27154 -14.96200 -14.61294 -14.47466 -14.13727 -13.49509 -13.34543 -13.12122 -12.91304 -12.55742 -12.35645 -12.32569 -11.88779 -11.79480 -11.75954 -11.31308 -11.12298 -10.95046 -10.89249 -10.83794 -10.72427 -10.67654 -10.54334 -10.43920 -10.41525 -10.17998 -9.81873 -9.69765 -9.47595 -9.26673 -8.75409 -8.35082 -7.02765 -5.98320 -3.98069 1.92857 3.31840 3.40207 3.43444 3.68109 3.86431 4.45026 4.59076 4.71924 4.85441 5.00343 5.22169 5.33286 5.36927 5.37414 5.42174 5.46576 5.53326 5.65341 5.74564 5.79634 5.87483 5.88706 5.96019 6.06158 6.09272 6.16651 6.22518 6.32545 6.36068 6.47053 6.49904 6.56186 6.68415 6.71965 6.74351 6.95205 7.03991 7.23425 7.33436 7.35279 7.62449 7.67156 7.95175 8.14608 8.22561 8.56963 9.10283 9.65076 11.12400 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.004727 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.799234 B = 5922.376542 C = 6643.075107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.102 4.102 4 C -0.115 4.115 5 C -0.151 4.151 6 C 0.071 3.929 7 N -0.526 5.526 8 C 0.192 3.808 9 C -0.502 4.502 10 H 0.080 0.920 11 C 0.054 3.946 12 N -0.899 5.899 13 Si 0.888 3.112 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.062 3.938 18 C -0.164 4.164 19 C 0.384 3.616 20 O -0.457 6.457 21 C -0.220 4.220 22 C -0.153 4.153 23 C -0.154 4.154 24 H 0.017 0.983 25 H 0.053 0.947 26 H 0.112 0.888 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.113 0.887 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.045 0.955 36 H 0.036 0.964 37 H -0.006 1.006 38 H 0.026 0.974 39 H 0.259 0.741 40 H 0.026 0.974 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.125 0.875 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.402 -13.219 -9.827 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.136 4.136 3 C -0.121 4.121 4 C -0.153 4.153 5 C -0.208 4.208 6 C -0.057 4.057 7 N -0.249 5.249 8 C 0.067 3.933 9 C -0.540 4.540 10 H 0.098 0.902 11 C -0.147 4.147 12 N -0.539 5.539 13 Si 0.716 3.284 14 H -0.196 1.196 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.067 4.067 18 C -0.201 4.201 19 C 0.259 3.741 20 O -0.331 6.331 21 C -0.239 4.239 22 C -0.190 4.190 23 C -0.191 4.191 24 H 0.036 0.964 25 H 0.072 0.928 26 H 0.129 0.871 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.131 0.869 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.012 0.988 38 H 0.044 0.956 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.143 0.857 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.861 -12.885 -9.807 16.906 hybrid contribution 0.495 0.565 0.760 1.069 sum 5.356 -12.319 -9.047 16.195 Atomic orbital electron populations 1.22322 0.94960 0.98658 1.06543 1.21340 0.97379 0.95839 0.99009 1.21636 0.93348 0.96564 1.00531 1.21533 0.96828 0.96592 1.00369 1.21797 0.99226 0.97190 1.02634 1.22094 0.88757 0.98594 0.96271 1.62256 1.11069 1.39611 1.11994 1.19824 0.95308 0.83532 0.94630 1.21451 1.43549 0.98508 0.90483 0.90224 1.24991 0.95754 0.95403 0.98506 1.69974 1.46048 1.02831 1.35004 0.86589 0.77591 0.78137 0.86055 1.19551 1.21250 1.21171 1.21845 1.01210 0.93256 0.90376 1.22199 1.03503 1.01252 0.93168 1.23917 0.73534 0.86755 0.89869 1.90384 1.33710 1.38123 1.70849 1.22931 1.08559 1.00385 0.92074 1.22926 0.97208 1.03762 0.95083 1.22948 0.93440 1.03245 0.99496 0.96434 0.92834 0.87053 0.94171 0.94321 0.86905 0.92809 0.93370 0.92247 0.94066 0.92612 0.93626 0.94565 0.98826 0.95636 0.93150 0.95533 0.90793 0.87430 0.88513 0.85742 0.88202 0.87959 0.88026 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.06 37.15 0.34 -2.54 16 2 C -0.10 -1.55 5.38 -26.73 -0.14 -1.69 16 3 C -0.10 -1.78 1.87 -90.62 -0.17 -1.95 16 4 C -0.12 -1.73 5.40 -26.73 -0.14 -1.88 16 5 C -0.15 -2.35 9.68 37.16 0.36 -1.99 16 6 C 0.07 1.27 4.11 -3.83 -0.02 1.26 16 7 N -0.53 -10.35 1.30 -236.07 -0.31 -10.66 16 8 C 0.19 4.78 4.73 -4.98 -0.02 4.75 16 9 C -0.50 -13.17 8.03 -34.44 -0.28 -13.45 16 10 H 0.08 2.03 3.69 -52.49 -0.19 1.83 16 11 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 12 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 13 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 C 0.06 1.10 4.07 -3.83 -0.02 1.08 16 18 C -0.16 -2.22 5.19 -27.89 -0.14 -2.37 16 19 C 0.38 5.12 6.92 -29.04 -0.20 4.92 16 20 O -0.46 -7.66 16.05 6.00 0.10 -7.56 16 21 C -0.22 -2.20 6.12 -91.77 -0.56 -2.77 16 22 C -0.15 -1.36 10.15 -26.69 -0.27 -1.63 16 23 C -0.15 -1.41 10.05 -26.69 -0.27 -1.68 16 24 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.05 1.05 6.90 -51.93 -0.36 0.69 16 26 H 0.11 1.98 3.18 -51.93 -0.17 1.82 16 27 H 0.04 0.57 8.11 -51.93 -0.42 0.14 16 28 H 0.04 0.59 8.13 -51.93 -0.42 0.16 16 29 H 0.11 2.38 4.50 -51.93 -0.23 2.15 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.90 6.42 -51.93 -0.33 0.57 16 35 H 0.05 0.72 5.78 -51.92 -0.30 0.42 16 36 H 0.04 0.72 5.66 -51.93 -0.29 0.42 16 37 H -0.01 -0.17 7.66 -51.93 -0.40 -0.56 16 38 H 0.03 0.70 7.76 -51.93 -0.40 0.29 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.03 0.50 8.08 -51.93 -0.42 0.08 16 41 H 0.07 1.42 7.79 -51.93 -0.40 1.01 16 42 H 0.11 1.38 6.96 -51.93 -0.36 1.02 16 43 H 0.10 1.20 6.26 -51.93 -0.33 0.87 16 44 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 47 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.10 1.08 7.89 -51.93 -0.41 0.67 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -29.12 364.09 -9.03 -38.15 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.38 Total: 2.49 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -1.64 Total: -18.53 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.43 Total: -36.27 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.10 Total: -7.56 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.12 -9.03 -38.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767413710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.414 kcal (2) G-P(sol) polarization free energy of solvation -29.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds