Wall clock time and date at job start Tue Mar 31 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47512 * 2 1 4 4 C 1.52990 * 109.47326 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.47378 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47249 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47081 * 305.00227 * 6 5 4 8 8 C 1.52994 * 109.46901 * 65.00008 * 6 5 4 9 9 C 1.52997 * 109.46909 * 185.00082 * 6 5 4 10 10 C 1.50702 * 109.47359 * 175.00113 * 9 6 5 11 11 O 1.21286 * 119.99649 * 353.69914 * 10 9 6 12 12 N 1.34770 * 120.00422 * 173.69839 * 10 9 6 13 13 C 1.46498 * 120.00036 * 184.17798 * 12 10 9 14 14 C 1.53009 * 109.47052 * 184.32703 * 13 12 10 15 15 C 1.50693 * 115.54892 * 294.97915 * 14 13 12 16 16 H 1.08005 * 120.00368 * 114.77852 * 15 14 13 17 17 C 1.37885 * 120.00401 * 294.50254 * 15 14 13 18 18 N 1.31506 * 120.00221 * 172.39419 * 17 15 14 19 19 Si 1.86796 * 119.99402 * 352.39278 * 17 15 14 20 20 H 1.48501 * 109.47222 * 94.04543 * 19 17 15 21 21 H 1.48503 * 109.47125 * 214.04476 * 19 17 15 22 22 H 1.48494 * 109.47553 * 334.04468 * 19 17 15 23 23 C 1.52994 * 117.49813 * 80.65003 * 14 13 12 24 24 C 1.52996 * 117.49811 * 149.30820 * 14 13 12 25 25 H 1.08996 * 109.46725 * 59.99983 * 1 2 3 26 26 H 1.08998 * 109.47091 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46946 * 300.00565 * 1 2 3 28 28 H 1.08996 * 109.47029 * 239.99385 * 2 1 3 29 29 H 1.09003 * 109.47079 * 120.00090 * 2 1 3 30 30 H 1.09005 * 109.46951 * 59.99776 * 3 2 1 31 31 H 1.09003 * 109.47023 * 300.00125 * 3 2 1 32 32 H 1.08996 * 109.47383 * 59.99927 * 4 3 2 33 33 H 1.08998 * 109.47502 * 299.99704 * 4 3 2 34 34 H 1.08996 * 109.46826 * 59.99705 * 5 4 3 35 35 H 1.08998 * 109.46660 * 300.00339 * 5 4 3 36 36 H 1.08999 * 109.47719 * 299.99915 * 8 6 5 37 37 H 1.09001 * 109.47549 * 60.00138 * 8 6 5 38 38 H 1.09000 * 109.47087 * 179.97438 * 8 6 5 39 39 H 1.08995 * 109.47205 * 55.00096 * 9 6 5 40 40 H 1.09001 * 109.47218 * 294.99923 * 9 6 5 41 41 H 0.97006 * 119.99860 * 4.16955 * 12 10 9 42 42 H 1.09001 * 109.47344 * 64.32745 * 13 12 10 43 43 H 1.08995 * 109.46975 * 304.32605 * 13 12 10 44 44 H 0.96998 * 119.99863 * 180.02562 * 18 17 15 45 45 H 1.09004 * 117.50008 * 215.00724 * 23 14 13 46 46 H 1.09005 * 117.49694 * 0.02562 * 23 14 13 47 47 H 1.09004 * 117.50048 * 359.97438 * 24 14 13 48 48 H 1.09003 * 117.49772 * 144.97569 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0802 2.8849 -0.0013 6 6 5.6101 2.8848 -0.0013 7 1 5.9734 2.2957 0.8407 8 6 6.1200 2.2746 -1.3083 9 6 6.1202 4.3219 0.1238 10 6 7.6221 4.3130 0.2473 11 8 8.2157 3.2604 0.3514 12 7 8.3056 5.4744 0.2421 13 6 9.7703 5.4625 0.2698 14 6 10.2903 6.8983 0.3661 15 6 9.9952 7.7775 -0.8217 16 1 9.3430 8.6315 -0.7128 17 6 10.5622 7.4950 -2.0464 18 7 10.1910 8.1676 -3.1138 19 14 11.8578 6.1569 -2.1893 20 1 11.2078 4.8772 -2.5700 21 1 12.8492 6.5367 -3.2276 22 1 12.5464 5.9931 -0.8839 23 6 10.2970 7.5560 1.7474 24 6 11.6142 7.1225 1.0994 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9338 0.9285 0.8891 34 1 3.7172 3.3990 0.8886 35 1 3.7164 3.3985 -0.8913 36 1 5.7567 1.2508 -1.3975 37 1 5.7568 2.8637 -2.1505 38 1 7.2100 2.2750 -1.3086 39 1 5.6856 4.7859 1.0092 40 1 5.8318 4.8882 -0.7618 41 1 7.8278 6.3183 0.2198 42 1 10.1473 5.0000 -0.6424 43 1 10.1127 4.8934 1.1340 44 1 10.5897 7.9685 -3.9753 45 1 10.0880 8.6247 1.7971 46 1 9.9315 6.9657 2.5877 47 1 12.1147 6.2472 1.5136 48 1 12.2720 7.9057 0.7224 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797562696.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:18 Heat of formation + Delta-G solvation = -61.475885 kcal Electronic energy + Delta-G solvation = -22132.269566 eV Core-core repulsion = 18993.195568 eV Total energy + Delta-G solvation = -3139.073999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.44002 -37.42862 -36.78304 -34.86721 -33.34683 -32.20084 -31.08780 -28.27849 -26.52851 -26.27738 -24.91087 -22.63964 -21.65603 -21.18619 -20.11904 -19.58285 -19.01739 -16.86223 -16.23055 -16.01220 -15.42899 -15.10006 -14.92090 -14.55219 -14.20034 -13.94494 -13.51005 -13.39547 -13.30061 -12.85017 -12.66747 -12.37824 -12.28743 -12.20369 -11.99635 -11.70053 -11.36043 -11.26227 -11.13164 -11.08120 -10.78428 -10.71428 -10.60723 -10.51587 -10.46557 -10.40365 -10.27000 -9.61345 -9.27879 -9.12261 -8.79674 -8.49295 -8.24706 -6.19584 -4.21816 3.17001 3.27830 3.37761 3.44006 3.79624 4.37880 4.51585 4.68595 4.81012 4.86406 4.93989 4.95544 5.11608 5.17854 5.19319 5.32554 5.47064 5.49322 5.53128 5.61544 5.68802 5.73441 5.77167 5.78151 5.79259 5.87084 5.89867 5.96540 5.99656 6.03320 6.12580 6.16860 6.19286 6.23957 6.27734 6.43783 6.51451 6.52857 6.62582 6.70207 6.94841 7.06250 7.19732 7.66006 8.23102 8.39450 8.81334 8.84047 9.44490 10.91341 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027157 B = 0.002989 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.800475 B = 9365.295200 C = 9664.352931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.115 4.115 6 C -0.074 4.074 7 H 0.077 0.923 8 C -0.152 4.152 9 C -0.138 4.138 10 C 0.505 3.495 11 O -0.558 6.558 12 N -0.703 5.703 13 C 0.154 3.846 14 C -0.018 4.018 15 C -0.490 4.490 16 H 0.078 0.922 17 C 0.083 3.917 18 N -0.892 5.892 19 Si 0.865 3.135 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.248 1.248 23 C -0.180 4.180 24 C -0.185 4.185 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.406 0.594 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.266 0.734 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.382 -11.176 6.638 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.152 4.152 6 C -0.093 4.093 7 H 0.095 0.905 8 C -0.209 4.209 9 C -0.178 4.178 10 C 0.291 3.709 11 O -0.438 6.438 12 N -0.353 5.353 13 C 0.030 3.970 14 C -0.019 4.019 15 C -0.527 4.527 16 H 0.096 0.904 17 C -0.120 4.120 18 N -0.528 5.528 19 Si 0.692 3.308 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.171 1.171 23 C -0.218 4.218 24 C -0.223 4.223 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.241 0.759 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.104 0.896 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.913 -11.874 6.486 19.408 hybrid contribution 0.564 -0.146 -0.325 0.667 sum -13.349 -12.020 6.161 18.991 Atomic orbital electron populations 1.21785 0.96109 1.01408 1.01748 1.21548 0.95643 0.97241 1.01951 1.21635 0.95779 0.96453 1.01929 1.21647 0.94812 0.97118 1.02264 1.21664 0.94961 0.96709 1.01912 1.20865 0.94072 0.94634 0.99691 0.90473 1.21951 1.02950 0.99896 0.96146 1.21750 0.92776 0.99229 1.04042 1.20627 0.89906 0.83910 0.76416 1.90620 1.71207 1.31163 1.50798 1.45898 1.07817 1.08493 1.73066 1.21041 0.79292 0.96885 0.99753 1.19628 0.97069 0.92469 0.92776 1.20218 1.30133 1.11852 0.90495 0.90439 1.24913 0.96015 0.95722 0.95386 1.69896 1.42078 1.41539 0.99284 0.87040 0.82482 0.82209 0.79070 1.20427 1.21800 1.17128 1.22798 1.02393 1.00304 0.96267 1.23027 0.91409 1.02109 1.05796 0.92800 0.92968 0.92834 0.92121 0.92148 0.92165 0.92103 0.91691 0.92110 0.92105 0.91926 0.92993 0.93325 0.91065 0.89264 0.89049 0.75904 0.92639 0.93409 0.92469 0.89637 0.90947 0.91148 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.94 5.93 -26.73 -0.16 -1.10 16 3 C -0.12 -0.96 5.21 -26.74 -0.14 -1.10 16 4 C -0.12 -1.10 4.97 -26.73 -0.13 -1.23 16 5 C -0.11 -1.13 4.68 -26.73 -0.13 -1.26 16 6 C -0.07 -0.93 2.03 -90.62 -0.18 -1.11 16 7 H 0.08 1.06 7.86 -51.93 -0.41 0.66 16 8 C -0.15 -2.08 8.69 37.15 0.32 -1.76 16 9 C -0.14 -1.84 5.18 -27.88 -0.14 -1.98 16 10 C 0.51 9.08 7.43 -10.99 -0.08 9.00 16 11 O -0.56 -11.73 14.21 5.55 0.08 -11.65 16 12 N -0.70 -13.35 5.48 -60.29 -0.33 -13.68 16 13 C 0.15 3.31 5.16 -4.04 -0.02 3.28 16 14 C -0.02 -0.40 0.85 -155.66 -0.13 -0.53 16 15 C -0.49 -12.77 9.14 -34.44 -0.31 -13.08 16 16 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 17 C 0.08 2.29 5.46 -17.82 -0.10 2.19 16 18 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 19 Si 0.86 21.20 25.08 -169.99 -4.26 16.94 16 20 H -0.28 -6.96 7.03 56.52 0.40 -6.56 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.25 -5.72 5.64 56.52 0.32 -5.40 16 23 C -0.18 -3.45 9.96 -26.70 -0.27 -3.72 16 24 C -0.19 -3.78 7.91 -26.70 -0.21 -4.00 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.62 6.57 -51.93 -0.34 0.28 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 1.20 6.18 -51.93 -0.32 0.88 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.41 7.19 8.33 -40.82 -0.34 6.85 16 42 H 0.06 1.32 5.22 -51.93 -0.27 1.05 16 43 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 48 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -29.59 374.61 -8.68 -38.27 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -9.27 Total: 6.87 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -1.32 Total: -17.05 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.44 Total: -39.03 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.26 Total: 16.94 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.59 -8.68 -38.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562696.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.203 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds