Wall clock time and date at job start Tue Mar 31 2020 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46901 * 2 1 4 4 C 1.53005 * 109.47153 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47153 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47257 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47085 * 54.99666 * 6 5 4 8 8 C 1.53000 * 109.46602 * 295.00060 * 6 5 4 9 9 C 1.53001 * 109.47181 * 175.00149 * 6 5 4 10 10 C 1.50703 * 109.47032 * 184.99989 * 9 6 5 11 11 O 1.21286 * 119.99859 * 359.97438 * 10 9 6 12 12 N 1.34774 * 120.00037 * 179.97438 * 10 9 6 13 13 C 1.46500 * 120.00013 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46924 * 178.27752 * 13 12 10 15 15 C 1.50694 * 115.55290 * 65.14035 * 14 13 12 16 16 H 1.08000 * 120.00199 * 265.40649 * 15 14 13 17 17 C 1.37882 * 120.00111 * 85.40187 * 15 14 13 18 18 N 1.31512 * 120.00096 * 353.55707 * 17 15 14 19 19 Si 1.86798 * 120.00147 * 173.54906 * 17 15 14 20 20 H 1.48498 * 109.47149 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46874 * 120.00249 * 19 17 15 22 22 H 1.48496 * 109.47597 * 240.00221 * 19 17 15 23 23 C 1.52999 * 117.49469 * 279.46646 * 14 13 12 24 24 C 1.53001 * 117.49548 * 210.80837 * 14 13 12 25 25 H 1.08992 * 109.47580 * 300.00101 * 1 2 3 26 26 H 1.09004 * 109.46932 * 60.00230 * 1 2 3 27 27 H 1.08998 * 109.46580 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47330 * 240.00290 * 2 1 3 29 29 H 1.09004 * 109.46932 * 119.99770 * 2 1 3 30 30 H 1.09003 * 109.47329 * 60.00030 * 3 2 1 31 31 H 1.09005 * 109.47644 * 299.99757 * 3 2 1 32 32 H 1.08994 * 109.47206 * 300.00198 * 4 3 2 33 33 H 1.08997 * 109.46833 * 60.00439 * 4 3 2 34 34 H 1.09004 * 109.47140 * 300.00096 * 5 4 3 35 35 H 1.08997 * 109.47523 * 60.00059 * 5 4 3 36 36 H 1.08999 * 109.47589 * 59.99918 * 8 6 5 37 37 H 1.09009 * 109.46877 * 180.02562 * 8 6 5 38 38 H 1.08998 * 109.47079 * 299.99610 * 8 6 5 39 39 H 1.09001 * 109.47059 * 304.99974 * 9 6 5 40 40 H 1.09001 * 109.47346 * 65.00042 * 9 6 5 41 41 H 0.97001 * 119.99811 * 0.02562 * 12 10 9 42 42 H 1.09008 * 109.46939 * 298.27558 * 13 12 10 43 43 H 1.08993 * 109.47017 * 58.27299 * 13 12 10 44 44 H 0.96997 * 120.00463 * 185.05180 * 18 17 15 45 45 H 1.08996 * 117.50020 * 0.02562 * 23 14 13 46 46 H 1.09007 * 117.49456 * 145.02346 * 23 14 13 47 47 H 1.09003 * 117.50074 * 214.97882 * 24 14 13 48 48 H 1.09002 * 117.49885 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6099 2.8851 0.0000 7 1 5.9733 2.2953 -0.8415 8 6 6.1199 2.2761 1.3077 9 6 6.1199 4.3221 -0.1263 10 6 7.6218 4.3131 -0.2498 11 8 8.2250 3.2610 -0.2375 12 7 8.2947 5.4742 -0.3740 13 6 9.7548 5.4655 -0.4935 14 6 10.2611 6.8993 -0.6637 15 6 10.0398 7.8111 0.5155 16 1 9.1659 8.4446 0.5517 17 6 10.9529 7.8364 1.5484 18 7 11.9482 6.9771 1.5673 19 14 10.7762 9.0915 2.9206 20 1 9.5821 9.9370 2.6674 21 1 10.6173 8.3870 4.2182 22 1 11.9886 9.9477 2.9675 23 6 10.1755 7.5174 -2.0606 24 6 11.5339 7.1059 -1.4873 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9330 0.9289 0.8908 33 1 3.9337 0.9287 -0.8891 34 1 3.7169 3.3984 -0.8905 35 1 3.7162 3.3994 0.8895 36 1 5.7566 1.2524 1.3977 37 1 7.2099 2.2766 1.3079 38 1 5.7565 2.8659 2.1492 39 1 5.6852 4.7853 -1.0121 40 1 5.8315 4.8892 0.7588 41 1 7.8123 6.3157 -0.3835 42 1 10.1904 5.0307 0.4062 43 1 10.0448 4.8724 -1.3607 44 1 12.5477 6.9460 2.3293 45 1 9.7582 6.9029 -2.8582 46 1 9.9595 8.5838 -2.1266 47 1 12.2109 7.9016 -1.1764 48 1 12.0107 6.2203 -1.9075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797562697.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:20 Heat of formation + Delta-G solvation = -64.858492 kcal Electronic energy + Delta-G solvation = -21947.437959 eV Core-core repulsion = 18808.217280 eV Total energy + Delta-G solvation = -3139.220679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.31820 -37.26772 -36.57243 -34.83321 -33.21792 -31.98436 -31.06025 -28.14903 -26.46727 -25.92586 -24.93594 -22.61040 -21.24549 -21.14743 -20.04479 -19.57381 -19.07097 -16.66594 -16.05502 -15.97170 -15.30616 -14.86343 -14.73264 -14.50115 -14.23487 -13.95542 -13.48767 -13.38702 -13.28843 -12.73695 -12.56132 -12.17805 -12.13853 -11.95810 -11.63722 -11.54160 -11.30799 -11.23737 -11.10531 -11.03514 -10.91551 -10.74879 -10.54024 -10.50411 -10.44209 -10.38335 -10.27390 -9.64126 -9.12689 -8.95947 -8.51449 -8.26033 -8.03818 -6.09218 -4.17855 3.23594 3.29180 3.32767 3.34728 3.92857 4.34055 4.53757 4.68754 4.82798 4.94965 4.97830 5.10030 5.18931 5.20447 5.29690 5.35856 5.49902 5.50195 5.53654 5.65477 5.74300 5.77978 5.79366 5.80939 5.88128 5.91190 6.00510 6.03664 6.04309 6.19009 6.20122 6.30167 6.33845 6.46893 6.53670 6.57806 6.67846 6.69832 6.91192 7.08767 7.33063 7.43834 7.48747 7.80242 8.32825 8.36650 8.83083 8.96574 9.48983 10.98670 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025285 B = 0.002805 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.113094 B = 9980.216780 C =10453.943888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.115 4.115 6 C -0.073 4.073 7 H 0.075 0.925 8 C -0.153 4.153 9 C -0.138 4.138 10 C 0.502 3.498 11 O -0.556 6.556 12 N -0.706 5.706 13 C 0.163 3.837 14 C 0.027 3.973 15 C -0.499 4.499 16 H 0.060 0.940 17 C 0.073 3.927 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.211 4.211 24 C -0.149 4.149 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.399 0.601 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.261 0.739 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.685 -8.331 -3.182 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.159 4.159 5 C -0.153 4.153 6 C -0.092 4.092 7 H 0.094 0.906 8 C -0.210 4.210 9 C -0.178 4.178 10 C 0.288 3.712 11 O -0.436 6.436 12 N -0.354 5.354 13 C 0.040 3.960 14 C 0.026 3.974 15 C -0.537 4.537 16 H 0.079 0.921 17 C -0.131 4.131 18 N -0.510 5.510 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.248 4.248 24 C -0.187 4.187 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.102 0.898 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.019 -9.081 -3.092 19.537 hybrid contribution -0.141 1.152 0.825 1.424 sum -17.160 -7.929 -2.267 19.039 Atomic orbital electron populations 1.21783 0.96126 1.01410 1.01724 1.21548 0.95625 0.97245 1.01975 1.21637 0.95817 0.96446 1.01882 1.21649 0.94766 0.97144 1.02299 1.21669 0.95119 0.96675 1.01792 1.20854 0.93901 0.94679 0.99744 0.90630 1.21988 1.03522 0.99655 0.95879 1.21749 0.93228 0.99107 1.03733 1.20565 0.89714 0.84128 0.76778 1.90613 1.70537 1.31118 1.51313 1.46024 1.09061 1.08107 1.72201 1.20960 0.77781 0.97224 1.00031 1.19053 0.97411 0.91636 0.89274 1.20375 1.07664 1.22531 1.03139 0.92147 1.24999 0.94683 0.95485 0.97960 1.69984 1.16317 1.34818 1.29902 0.86576 0.78077 0.81654 0.81927 1.19712 1.21029 1.20946 1.23019 1.03198 0.99929 0.98644 1.22492 0.90703 1.01330 1.04154 0.92825 0.92841 0.92965 0.92122 0.92111 0.92152 0.92184 0.91665 0.92096 0.92172 0.92036 0.93170 0.90420 0.93589 0.89547 0.89283 0.76709 0.91084 0.94629 0.92891 0.91675 0.90375 0.89841 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.12 -0.95 5.21 -26.73 -0.14 -1.09 16 4 C -0.12 -1.10 4.97 -26.73 -0.13 -1.23 16 5 C -0.11 -1.13 4.68 -26.73 -0.13 -1.25 16 6 C -0.07 -0.91 2.04 -90.62 -0.18 -1.10 16 7 H 0.08 1.05 7.96 -51.93 -0.41 0.64 16 8 C -0.15 -2.08 8.69 37.16 0.32 -1.76 16 9 C -0.14 -1.83 5.17 -27.88 -0.14 -1.97 16 10 C 0.50 9.14 7.55 -10.99 -0.08 9.06 16 11 O -0.56 -11.99 13.97 5.55 0.08 -11.91 16 12 N -0.71 -13.58 5.47 -60.29 -0.33 -13.91 16 13 C 0.16 3.72 5.50 -4.04 -0.02 3.70 16 14 C 0.03 0.63 1.38 -155.66 -0.21 0.42 16 15 C -0.50 -12.80 8.63 -34.44 -0.30 -13.10 16 16 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 17 C 0.07 1.93 5.39 -17.82 -0.10 1.84 16 18 N -0.87 -24.31 12.91 55.43 0.72 -23.59 16 19 Si 0.89 20.52 29.55 -169.99 -5.02 15.49 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 C -0.21 -4.37 9.96 -26.69 -0.27 -4.63 16 24 C -0.15 -3.41 9.42 -26.69 -0.25 -3.66 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.60 6.57 -51.93 -0.34 0.26 16 37 H 0.08 1.31 5.95 -51.92 -0.31 1.00 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.40 7.00 8.36 -40.82 -0.34 6.66 16 42 H 0.07 1.87 8.14 -51.92 -0.42 1.44 16 43 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 44 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.08 1.59 8.14 -51.92 -0.42 1.16 16 47 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 48 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 383.84 15.07 5.78 5.78 Total: -1.00 -28.56 383.84 -9.52 -38.08 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -9.32 Total: 6.56 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -1.42 Total: -16.51 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.39 Total: -37.50 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.08 Total: -11.91 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.56 -9.52 -38.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562697.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.774 kcal (2) G-P(sol) polarization free energy of solvation -28.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds