Wall clock time and date at job start Tue Mar 31 2020 06:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47192 * 2 1 4 4 C 1.53002 * 109.47192 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46707 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.46707 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.47220 * 304.99864 * 6 5 4 8 8 C 1.52999 * 109.47158 * 64.99816 * 6 5 4 9 9 C 1.53002 * 109.47122 * 182.49529 * 8 6 5 10 10 C 1.50693 * 109.47010 * 184.99867 * 6 5 4 11 11 O 1.21280 * 120.00142 * 350.78900 * 10 6 5 12 12 N 1.34784 * 120.00210 * 170.78832 * 10 6 5 13 13 C 1.46497 * 120.00118 * 176.12814 * 12 10 6 14 14 C 1.52996 * 109.47081 * 185.11963 * 13 12 10 15 15 C 1.50704 * 115.54754 * 304.99907 * 14 13 12 16 16 H 1.08003 * 120.00148 * 145.21125 * 15 14 13 17 17 C 1.37877 * 119.99900 * 325.21587 * 15 14 13 18 18 N 1.31521 * 120.00089 * 167.45447 * 17 15 14 19 19 Si 1.86799 * 120.00238 * 347.44921 * 17 15 14 20 20 H 1.48500 * 109.47222 * 95.04329 * 19 17 15 21 21 H 1.48499 * 109.47164 * 215.04723 * 19 17 15 22 22 H 1.48506 * 109.46938 * 335.04746 * 19 17 15 23 23 C 1.52999 * 117.50212 * 159.33535 * 14 13 12 24 24 C 1.52995 * 117.50512 * 90.67004 * 14 13 12 25 25 H 1.09007 * 109.46799 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47008 * 299.99531 * 1 2 3 27 27 H 1.08999 * 109.47059 * 60.00257 * 1 2 3 28 28 H 1.09001 * 109.47467 * 239.99850 * 2 1 3 29 29 H 1.08996 * 109.47255 * 120.00230 * 2 1 3 30 30 H 1.09002 * 109.46574 * 59.99849 * 3 2 1 31 31 H 1.08996 * 109.47209 * 300.00259 * 3 2 1 32 32 H 1.08990 * 109.46991 * 59.99914 * 4 3 2 33 33 H 1.08999 * 109.47059 * 299.99743 * 4 3 2 34 34 H 1.09001 * 109.47244 * 60.00377 * 5 4 3 35 35 H 1.08999 * 109.46968 * 299.99575 * 5 4 3 36 36 H 1.08997 * 109.47256 * 62.49611 * 8 6 5 37 37 H 1.09000 * 109.47336 * 302.49211 * 8 6 5 38 38 H 1.08995 * 109.47212 * 178.11552 * 9 8 6 39 39 H 1.08998 * 109.47126 * 58.11260 * 9 8 6 40 40 H 1.09005 * 109.46700 * 298.11424 * 9 8 6 41 41 H 0.96996 * 119.99510 * 356.12448 * 12 10 6 42 42 H 1.09004 * 109.46597 * 305.11367 * 13 12 10 43 43 H 1.08999 * 109.47314 * 65.11292 * 13 12 10 44 44 H 0.96998 * 120.00226 * 180.02562 * 18 17 15 45 45 H 1.08996 * 117.49836 * 359.97438 * 23 14 13 46 46 H 1.09003 * 117.50022 * 145.01991 * 23 14 13 47 47 H 1.08998 * 117.50067 * 214.98214 * 24 14 13 48 48 H 1.09001 * 117.49726 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6100 2.8851 0.0000 7 1 5.9734 2.2952 0.8416 8 6 6.1200 2.2760 -1.3076 9 6 7.6487 2.2189 -1.2815 10 6 6.1123 4.3004 0.1244 11 8 5.3369 5.2289 0.0373 12 7 7.4232 4.5344 0.3326 13 6 7.9249 5.9103 0.3689 14 6 9.4500 5.8940 0.4902 15 6 10.0011 5.1102 1.6534 16 1 10.9325 4.5733 1.5501 17 6 9.3161 5.0784 2.8496 18 7 9.6539 4.2101 3.7780 19 14 7.9085 6.2686 3.1519 20 1 6.6222 5.6120 2.8061 21 1 7.8934 6.6641 4.5832 22 1 8.0909 7.4759 2.3066 23 6 10.2060 7.1549 0.0666 24 6 10.2621 5.8988 -0.8064 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.9330 0.9288 -0.8908 33 1 3.9338 0.9286 0.8891 34 1 3.7170 3.3984 0.8905 35 1 3.7163 3.3994 -0.8896 36 1 5.7937 2.8908 -2.1464 37 1 5.7207 1.2679 -1.4190 38 1 8.0107 1.7544 -2.1987 39 1 7.9758 1.6318 -0.4233 40 1 8.0488 3.2299 -1.2038 41 1 8.0344 3.7918 0.4584 42 1 7.6389 6.4256 -0.5481 43 1 7.4977 6.4304 1.2263 44 1 9.1718 4.1875 4.6194 45 1 9.6169 7.9960 -0.2989 46 1 11.1021 7.4173 0.6290 47 1 11.1950 5.3353 -0.8181 48 1 9.7098 5.9131 -1.7460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797562723.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:22 Heat of formation + Delta-G solvation = -41.398535 kcal Electronic energy + Delta-G solvation = -23130.897281 eV Core-core repulsion = 19992.693902 eV Total energy + Delta-G solvation = -3138.203379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.70554 -37.29574 -36.45696 -34.77454 -33.44999 -32.30551 -31.49694 -28.52396 -27.10910 -25.38395 -24.39639 -22.42799 -21.58103 -21.30087 -20.71507 -19.62130 -18.98736 -16.99959 -16.30065 -15.84851 -15.73021 -15.33339 -14.76165 -14.23691 -14.08422 -13.87612 -13.44617 -13.34676 -13.13421 -13.03992 -12.85159 -12.62118 -12.24591 -12.09691 -11.91757 -11.57024 -11.28981 -11.22897 -11.02715 -10.92698 -10.73094 -10.66708 -10.63363 -10.52327 -10.49521 -10.27524 -9.93511 -9.66224 -9.38769 -9.10265 -8.98774 -8.45218 -8.07694 -6.28550 -4.23334 3.19646 3.29715 3.36457 3.39606 3.80642 4.30211 4.62490 4.73443 4.78175 4.87315 4.97998 5.08842 5.13826 5.21939 5.30294 5.37758 5.48907 5.56369 5.59327 5.63508 5.65938 5.74496 5.81939 5.83808 5.87627 5.88259 5.96233 6.02015 6.08428 6.11182 6.15198 6.19731 6.21358 6.28701 6.40094 6.45603 6.49215 6.50498 6.52136 6.63833 6.83698 7.07249 7.20435 7.60681 8.25994 8.36711 8.76991 8.86996 9.36499 10.82244 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020788 B = 0.004270 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.611215 B = 6555.073159 C = 6994.266354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.098 4.098 6 C -0.109 4.109 7 H 0.094 0.906 8 C -0.110 4.110 9 C -0.175 4.175 10 C 0.510 3.490 11 O -0.561 6.561 12 N -0.701 5.701 13 C 0.136 3.864 14 C -0.006 4.006 15 C -0.491 4.491 16 H 0.080 0.920 17 C 0.085 3.915 18 N -0.883 5.883 19 Si 0.885 3.115 20 H -0.275 1.275 21 H -0.300 1.300 22 H -0.263 1.263 23 C -0.201 4.201 24 C -0.187 4.187 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.414 0.586 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.267 0.733 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.115 -7.479 -8.817 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.159 4.159 5 C -0.136 4.136 6 C -0.131 4.131 7 H 0.112 0.888 8 C -0.148 4.148 9 C -0.233 4.233 10 C 0.296 3.704 11 O -0.440 6.440 12 N -0.354 5.354 13 C 0.013 3.987 14 C -0.007 4.007 15 C -0.528 4.528 16 H 0.098 0.902 17 C -0.119 4.119 18 N -0.519 5.519 19 Si 0.716 3.284 20 H -0.201 1.201 21 H -0.228 1.228 22 H -0.190 1.190 23 C -0.240 4.240 24 C -0.224 4.224 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.253 0.747 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.102 0.898 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.665 -6.911 -8.679 16.099 hybrid contribution -0.342 0.414 0.410 0.676 sum -12.007 -6.497 -8.269 15.961 Atomic orbital electron populations 1.21783 0.96155 1.01338 1.01773 1.21543 0.95622 0.97198 1.01914 1.21618 0.95629 0.96409 1.02131 1.21685 0.95140 0.96891 1.02150 1.21368 0.92699 0.96247 1.03283 1.21412 0.97196 0.94161 1.00313 0.88781 1.21491 0.96524 1.00884 0.95878 1.22169 0.95232 1.03795 1.02084 1.20578 0.82403 0.91114 0.76299 1.90619 1.55738 1.45895 1.51785 1.46317 1.08396 1.09945 1.70763 1.21296 0.94218 0.82906 1.00250 1.19524 0.88424 0.97581 0.95164 1.20318 1.09123 1.29861 0.93485 0.90173 1.24937 0.96769 0.94338 0.95893 1.69920 1.41562 1.33168 1.07211 0.87008 0.82861 0.82836 0.75676 1.20129 1.22829 1.18953 1.23104 1.03963 0.91663 1.05243 1.22828 1.02669 1.02600 0.94345 0.92994 0.92801 0.92847 0.92152 0.92088 0.92040 0.92067 0.91705 0.91955 0.91499 0.91318 0.91808 0.90923 0.92561 0.91998 0.90694 0.74673 0.92698 0.92384 0.92306 0.91240 0.89367 0.89785 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.13 -1.07 5.93 -26.73 -0.16 -1.23 16 3 C -0.12 -1.18 5.21 -26.73 -0.14 -1.32 16 4 C -0.12 -1.29 4.97 -26.73 -0.13 -1.43 16 5 C -0.10 -1.34 3.98 -26.73 -0.11 -1.45 16 6 C -0.11 -1.64 2.27 -91.77 -0.21 -1.85 16 7 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 8 C -0.11 -1.37 5.23 -26.73 -0.14 -1.51 16 9 C -0.18 -2.29 8.76 37.16 0.33 -1.96 16 10 C 0.51 10.01 6.90 -10.99 -0.08 9.94 16 11 O -0.56 -12.76 16.03 5.56 0.09 -12.67 16 12 N -0.70 -14.31 3.55 -60.30 -0.21 -14.52 16 13 C 0.14 3.02 4.35 -4.05 -0.02 3.00 16 14 C -0.01 -0.13 1.48 -155.66 -0.23 -0.36 16 15 C -0.49 -12.80 8.84 -34.44 -0.30 -13.10 16 16 H 0.08 2.26 8.06 -52.48 -0.42 1.83 16 17 C 0.09 2.31 5.35 -17.82 -0.10 2.22 16 18 N -0.88 -25.24 13.96 55.43 0.77 -24.47 16 19 Si 0.88 22.23 23.84 -169.99 -4.05 18.18 16 20 H -0.27 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 22 H -0.26 -6.48 6.41 56.52 0.36 -6.11 16 23 C -0.20 -4.11 9.96 -26.69 -0.27 -4.38 16 24 C -0.19 -3.62 9.93 -26.70 -0.27 -3.89 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.63 6.51 -51.93 -0.34 0.29 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 35 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.76 6.45 -51.93 -0.34 0.42 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.13 5.42 -51.93 -0.28 0.85 16 41 H 0.41 8.22 5.87 -40.82 -0.24 7.98 16 42 H 0.05 1.16 8.09 -51.93 -0.42 0.74 16 43 H 0.06 1.42 2.57 -51.93 -0.13 1.29 16 44 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 47 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 48 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -29.39 368.87 -8.24 -37.64 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -8.95 Total: 8.42 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -1.45 Total: -18.13 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.56 Total: -38.99 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.05 Total: 18.18 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.39 -8.24 -37.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562723.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.763 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds