Wall clock time and date at job start Tue Mar 31 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47057 * 2 1 4 4 C 1.52999 * 109.47057 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47244 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47330 * 179.19605 * 5 4 3 7 7 H 1.09000 * 109.46860 * 54.57642 * 6 5 4 8 8 C 1.53000 * 109.47267 * 294.57429 * 6 5 4 9 9 C 1.52996 * 109.47233 * 295.01369 * 8 6 5 10 10 C 1.50708 * 109.47156 * 174.57543 * 6 5 4 11 11 O 1.21276 * 119.99864 * 0.02562 * 10 6 5 12 12 N 1.34772 * 119.99676 * 180.02562 * 10 6 5 13 13 C 1.46506 * 119.99833 * 180.02562 * 12 10 6 14 14 C 1.52999 * 109.46979 * 185.14288 * 13 12 10 15 15 C 1.50701 * 115.55173 * 55.51947 * 14 13 12 16 16 H 1.07994 * 119.99783 * 264.68426 * 15 14 13 17 17 C 1.37881 * 119.99954 * 84.68793 * 15 14 13 18 18 N 1.31510 * 119.99881 * 2.00179 * 17 15 14 19 19 Si 1.86798 * 119.99828 * 182.00725 * 17 15 14 20 20 H 1.48500 * 109.47277 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47000 * 119.99826 * 19 17 15 22 22 H 1.48497 * 109.47156 * 239.99795 * 19 17 15 23 23 C 1.52998 * 117.49896 * 269.84484 * 14 13 12 24 24 C 1.53001 * 117.49572 * 201.18689 * 14 13 12 25 25 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47621 * 300.00819 * 1 2 3 27 27 H 1.09005 * 109.46819 * 60.00426 * 1 2 3 28 28 H 1.08992 * 109.47544 * 239.99747 * 2 1 3 29 29 H 1.09005 * 109.46819 * 119.99574 * 2 1 3 30 30 H 1.08991 * 109.47571 * 59.99172 * 3 2 1 31 31 H 1.09005 * 109.46958 * 299.99488 * 3 2 1 32 32 H 1.09002 * 109.47559 * 59.99734 * 4 3 2 33 33 H 1.08996 * 109.46924 * 299.99328 * 4 3 2 34 34 H 1.09000 * 109.47339 * 59.19605 * 5 4 3 35 35 H 1.09008 * 109.47235 * 299.19667 * 5 4 3 36 36 H 1.08999 * 109.47133 * 175.00778 * 8 6 5 37 37 H 1.09000 * 109.46645 * 55.01323 * 8 6 5 38 38 H 1.09005 * 109.47127 * 304.53119 * 9 8 6 39 39 H 1.08999 * 109.47163 * 184.53505 * 9 8 6 40 40 H 1.08998 * 109.47425 * 64.53324 * 9 8 6 41 41 H 0.96999 * 120.00390 * 359.97438 * 12 10 6 42 42 H 1.09000 * 109.46565 * 305.14240 * 13 12 10 43 43 H 1.08996 * 109.47256 * 65.13664 * 13 12 10 44 44 H 0.97002 * 119.99987 * 185.01199 * 18 17 15 45 45 H 1.09005 * 117.49591 * 0.02562 * 23 14 13 46 46 H 1.09000 * 117.49891 * 145.02254 * 23 14 13 47 47 H 1.08995 * 117.50209 * 214.97807 * 24 14 13 48 48 H 1.09004 * 117.49903 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6099 2.8850 0.0183 7 1 5.9838 2.2852 -0.8114 8 6 6.1030 2.2917 1.3395 9 6 5.6831 3.2017 2.4955 10 6 6.1139 4.2989 -0.1166 11 8 5.3270 5.2161 -0.2179 12 7 7.4392 4.5439 -0.1247 13 6 7.9292 5.9184 -0.2552 14 6 9.4552 5.9074 -0.3653 15 6 10.0208 5.0578 -1.4741 16 1 10.3402 4.0465 -1.2701 17 6 10.1307 5.5717 -2.7488 18 7 9.7787 6.8159 -2.9888 19 14 10.7794 4.5006 -4.1349 20 1 11.1038 3.1509 -3.6072 21 1 9.7459 4.3830 -5.1948 22 1 12.0047 5.1164 -4.7045 23 6 10.2579 5.9994 0.9339 24 6 10.1979 7.1985 -0.0155 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8898 31 1 1.6767 1.9563 -0.8901 32 1 3.9330 0.9288 -0.8908 33 1 3.9336 0.9287 0.8891 34 1 3.7053 3.4033 0.8814 35 1 3.7281 3.3944 -0.8984 36 1 7.1897 2.2097 1.3178 37 1 5.6668 1.3026 1.4788 38 1 6.0521 4.2115 2.3155 39 1 6.1026 2.8224 3.4273 40 1 4.5957 3.2196 2.5674 41 1 8.0685 3.8103 -0.0432 42 1 7.5036 6.3723 -1.1502 43 1 7.6322 6.4948 0.6208 44 1 9.7868 7.1556 -3.8974 45 1 9.6987 6.0672 1.8672 46 1 11.1953 5.4456 0.9867 47 1 11.0959 7.4332 -0.5870 48 1 9.5994 8.0558 0.2926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797562724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:24 Heat of formation + Delta-G solvation = -63.301610 kcal Electronic energy + Delta-G solvation = -22653.621877 eV Core-core repulsion = 19514.468709 eV Total energy + Delta-G solvation = -3139.153168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.56577 -37.04948 -36.36735 -34.75552 -33.21556 -31.97587 -31.31344 -28.44698 -26.51941 -25.43481 -24.43793 -22.89097 -21.38165 -21.14015 -20.56292 -19.46533 -18.57528 -16.59204 -16.15169 -15.88262 -15.30128 -15.19572 -14.67461 -14.38631 -14.09166 -13.79922 -13.45749 -13.31707 -13.10144 -12.77745 -12.58945 -12.44085 -12.00095 -11.88404 -11.77521 -11.56408 -11.37161 -11.17053 -11.01078 -10.96230 -10.91422 -10.70230 -10.68852 -10.53755 -10.40332 -10.26389 -10.24194 -9.57445 -9.10610 -9.02189 -8.48518 -8.26531 -7.98599 -6.08911 -4.18023 3.24066 3.32844 3.33185 3.34631 3.93911 4.34806 4.63721 4.77020 4.87527 4.98923 5.02415 5.08069 5.20480 5.22768 5.32925 5.36873 5.43052 5.57230 5.59296 5.61475 5.75609 5.79038 5.80134 5.86548 5.92751 5.99795 6.04305 6.07933 6.11013 6.18273 6.23690 6.32133 6.34147 6.40960 6.50132 6.54631 6.57999 6.70843 6.91345 7.11439 7.34885 7.40533 7.53389 7.79923 8.33149 8.40013 8.83538 8.99210 9.49396 10.99288 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019280 B = 0.003720 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.922742 B = 7525.862657 C = 8300.071917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.099 4.099 6 C -0.110 4.110 7 H 0.093 0.907 8 C -0.115 4.115 9 C -0.155 4.155 10 C 0.510 3.490 11 O -0.560 6.560 12 N -0.700 5.700 13 C 0.164 3.836 14 C 0.026 3.974 15 C -0.498 4.498 16 H 0.060 0.940 17 C 0.074 3.926 18 N -0.874 5.874 19 Si 0.888 3.112 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.212 4.212 24 C -0.145 4.145 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.400 0.600 42 H 0.068 0.932 43 H 0.033 0.967 44 H 0.261 0.739 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.144 -11.820 7.620 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.137 4.137 6 C -0.131 4.131 7 H 0.111 0.889 8 C -0.152 4.152 9 C -0.212 4.212 10 C 0.296 3.704 11 O -0.440 6.440 12 N -0.348 5.348 13 C 0.041 3.959 14 C 0.025 3.975 15 C -0.535 4.535 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.510 5.510 19 Si 0.716 3.284 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.249 4.249 24 C -0.183 4.183 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.234 0.766 42 H 0.087 0.913 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.104 0.896 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.631 -10.975 7.401 17.621 hybrid contribution 0.739 -0.739 -0.921 1.393 sum -10.891 -11.714 6.480 17.257 Atomic orbital electron populations 1.21785 0.96156 1.01324 1.01801 1.21542 0.95628 0.97243 1.01850 1.21615 0.95664 0.96347 1.02158 1.21682 0.95123 0.97067 1.01974 1.21398 0.92812 0.96078 1.03439 1.21398 0.97466 0.94689 0.99592 0.88927 1.21525 1.01133 0.99206 0.93374 1.21843 1.01481 1.00215 0.97692 1.20426 0.82799 0.90661 0.76513 1.90636 1.55715 1.46478 1.51172 1.45930 1.06027 1.10888 1.71982 1.20904 0.94958 0.80830 0.99256 1.19048 0.88280 0.97760 0.92431 1.20367 1.42296 0.98525 0.92353 0.92200 1.24981 0.94785 0.94575 0.98701 1.69999 1.47017 1.13738 1.20247 0.86603 0.78676 0.80730 0.82398 1.19686 1.20966 1.21022 1.23046 1.02746 1.05098 0.94009 1.22465 1.03084 0.91053 1.01747 0.93020 0.92830 0.92785 0.92142 0.92191 0.92074 0.92010 0.92101 0.91812 0.91224 0.91294 0.91423 0.91023 0.92347 0.92846 0.92487 0.76607 0.91323 0.94849 0.92941 0.91727 0.90440 0.89639 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.13 -1.01 5.93 -26.73 -0.16 -1.17 16 3 C -0.12 -1.12 5.21 -26.73 -0.14 -1.26 16 4 C -0.12 -1.21 5.00 -26.73 -0.13 -1.35 16 5 C -0.10 -1.29 3.91 -26.73 -0.10 -1.39 16 6 C -0.11 -1.53 2.50 -91.77 -0.23 -1.76 16 7 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 8 C -0.11 -1.33 5.45 -26.73 -0.15 -1.47 16 9 C -0.16 -1.89 9.34 37.16 0.35 -1.54 16 10 C 0.51 9.54 5.58 -10.98 -0.06 9.47 16 11 O -0.56 -12.51 15.91 5.56 0.09 -12.42 16 12 N -0.70 -13.65 5.26 -60.29 -0.32 -13.97 16 13 C 0.16 3.72 5.56 -4.04 -0.02 3.70 16 14 C 0.03 0.60 1.54 -155.66 -0.24 0.36 16 15 C -0.50 -12.73 8.27 -34.44 -0.28 -13.02 16 16 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 17 C 0.07 1.95 5.43 -17.82 -0.10 1.86 16 18 N -0.87 -24.34 12.72 55.43 0.71 -23.64 16 19 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.21 -4.41 9.93 -26.70 -0.27 -4.67 16 24 C -0.15 -3.35 9.26 -26.69 -0.25 -3.59 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.59 6.44 -51.93 -0.33 0.25 16 34 H 0.07 0.94 6.42 -51.93 -0.33 0.61 16 35 H 0.07 1.01 7.94 -51.92 -0.41 0.60 16 36 H 0.07 0.77 7.71 -51.93 -0.40 0.37 16 37 H 0.07 0.69 6.35 -51.93 -0.33 0.36 16 38 H 0.06 0.86 6.90 -51.93 -0.36 0.51 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.66 6.67 -51.93 -0.35 0.32 16 41 H 0.40 7.21 7.67 -40.82 -0.31 6.89 16 42 H 0.07 1.80 8.13 -51.93 -0.42 1.38 16 43 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 44 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 47 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 48 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 380.03 15.07 5.73 5.73 Total: -1.00 -28.81 380.03 -9.37 -38.18 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -9.14 Total: 7.22 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -1.41 Total: -16.60 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.39 Total: -37.61 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.81 -9.37 -38.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.122 kcal (2) G-P(sol) polarization free energy of solvation -28.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds