Wall clock time and date at job start Tue Mar 31 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46903 * 2 1 4 4 C 1.53008 * 109.46920 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47035 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46720 * 179.97438 * 5 4 3 7 7 C 1.53007 * 109.46950 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46975 * 304.99652 * 7 6 5 9 9 C 1.52993 * 109.47377 * 64.99886 * 7 6 5 10 10 C 1.50697 * 109.46976 * 185.00264 * 7 6 5 11 11 O 1.21275 * 120.00388 * 325.00660 * 10 7 6 12 12 N 1.34781 * 119.99828 * 145.01546 * 10 7 6 13 13 C 1.46504 * 119.99774 * 185.08064 * 12 10 7 14 14 C 1.53001 * 109.46751 * 175.29700 * 13 12 10 15 15 C 1.50698 * 115.55036 * 297.97676 * 14 13 12 16 16 H 1.07996 * 120.00373 * 93.73192 * 15 14 13 17 17 C 1.37879 * 120.00016 * 273.73091 * 15 14 13 18 18 N 1.31522 * 120.00004 * 7.19302 * 17 15 14 19 19 Si 1.86798 * 120.00237 * 187.19114 * 17 15 14 20 20 H 1.48508 * 109.46949 * 60.00315 * 19 17 15 21 21 H 1.48504 * 109.47115 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47295 * 300.00334 * 19 17 15 23 23 C 1.53004 * 117.49518 * 152.31157 * 14 13 12 24 24 C 1.52998 * 117.49933 * 83.64878 * 14 13 12 25 25 H 1.08995 * 109.47269 * 300.00406 * 1 2 3 26 26 H 1.09006 * 109.46917 * 60.00193 * 1 2 3 27 27 H 1.08999 * 109.47081 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47269 * 239.99594 * 2 1 3 29 29 H 1.08998 * 109.47091 * 119.99592 * 2 1 3 30 30 H 1.08995 * 109.47490 * 59.99729 * 3 2 1 31 31 H 1.08994 * 109.47196 * 299.99284 * 3 2 1 32 32 H 1.09004 * 109.47109 * 59.99536 * 4 3 2 33 33 H 1.09006 * 109.46941 * 299.99833 * 4 3 2 34 34 H 1.09006 * 109.46849 * 60.00249 * 5 4 3 35 35 H 1.08998 * 109.47113 * 299.99933 * 5 4 3 36 36 H 1.08997 * 109.47733 * 60.00112 * 6 5 4 37 37 H 1.08998 * 109.47436 * 299.99935 * 6 5 4 38 38 H 1.09007 * 109.47091 * 294.16686 * 9 7 6 39 39 H 1.09001 * 109.47396 * 174.17042 * 9 7 6 40 40 H 1.09001 * 109.47229 * 54.16350 * 9 7 6 41 41 H 0.96998 * 120.00450 * 5.07222 * 12 10 7 42 42 H 1.08996 * 109.46870 * 295.29276 * 13 12 10 43 43 H 1.08993 * 109.47255 * 55.29681 * 13 12 10 44 44 H 0.96998 * 120.00113 * 185.01675 * 18 17 15 45 45 H 1.09001 * 117.49954 * 359.97438 * 23 14 13 46 46 H 1.09000 * 117.50100 * 145.02219 * 23 14 13 47 47 H 1.09000 * 117.50232 * 214.97199 * 24 14 13 48 48 H 1.09000 * 117.50118 * 359.97361 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6099 2.8850 0.0013 7 6 6.1200 4.3275 0.0013 8 1 5.6861 4.8663 -0.8411 9 6 5.7142 5.0120 1.3080 10 6 7.6220 4.3292 -0.1213 11 8 8.2744 3.4525 0.4046 12 7 8.2403 5.3052 -0.8154 13 6 9.6885 5.2471 -1.0292 14 6 10.1165 6.4015 -1.9376 15 6 9.5225 6.3933 -3.3226 16 1 8.6194 6.9495 -3.5261 17 6 10.1320 5.6758 -4.3299 18 7 11.1474 4.8868 -4.0536 19 14 9.5158 5.8243 -6.0870 20 1 9.6285 7.2361 -6.5335 21 1 10.3343 4.9585 -6.9735 22 1 8.0952 5.3968 -6.1511 23 6 11.5447 6.9287 -1.7845 24 6 10.3627 7.7620 -1.2825 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 3.7162 3.3994 0.8896 35 1 3.7170 3.3983 -0.8904 36 1 5.9741 2.3705 -0.8880 37 1 5.9725 2.3718 0.8919 38 1 4.6287 5.1035 1.3484 39 1 6.1643 6.0037 1.3538 40 1 6.0602 4.4165 2.1528 41 1 7.7265 6.0459 -1.1735 42 1 10.2008 5.3299 -0.0707 43 1 9.9486 4.2990 -1.4996 44 1 11.6225 4.4386 -4.7707 45 1 12.1791 6.4534 -1.0364 46 1 12.0544 7.2701 -2.6855 47 1 10.0955 8.6513 -1.8535 48 1 10.2194 7.8349 -0.2045 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797562818.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:54 Heat of formation + Delta-G solvation = -67.106713 kcal Electronic energy + Delta-G solvation = -22014.526428 eV Core-core repulsion = 18875.208258 eV Total energy + Delta-G solvation = -3139.318170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.33795 -37.05374 -36.54384 -34.77590 -33.22142 -31.98612 -31.75604 -28.11542 -26.53692 -25.44171 -24.81058 -22.56387 -21.23187 -21.15128 -20.65248 -19.55300 -18.93416 -16.71296 -16.17010 -15.98561 -15.13281 -14.87075 -14.67139 -14.42664 -14.15247 -14.01182 -13.63971 -13.28765 -13.14650 -12.77859 -12.66862 -12.38616 -12.08894 -11.78325 -11.67897 -11.65966 -11.52716 -11.15507 -11.08979 -11.06506 -10.88281 -10.83705 -10.70503 -10.55940 -10.47163 -10.39173 -10.27315 -9.65936 -9.12118 -8.94994 -8.47653 -8.27348 -8.03343 -6.09555 -4.17721 3.26422 3.28153 3.32790 3.33846 3.92206 4.35520 4.54482 4.70842 4.85355 4.92479 5.01582 5.08578 5.19102 5.19343 5.28989 5.35629 5.37870 5.44611 5.54595 5.65063 5.69483 5.73640 5.77023 5.82470 5.85232 5.96882 6.00596 6.02592 6.03990 6.09331 6.19663 6.22088 6.32907 6.40790 6.46568 6.48879 6.55813 6.68690 6.90085 7.08297 7.32661 7.42743 7.48834 7.80062 8.32765 8.37090 8.83162 8.96322 9.49509 10.99084 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017174 B = 0.003264 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.002693 B = 8576.388698 C = 9636.980022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.101 4.101 7 C -0.110 4.110 8 H 0.087 0.913 9 C -0.138 4.138 10 C 0.508 3.492 11 O -0.559 6.559 12 N -0.703 5.703 13 C 0.162 3.838 14 C 0.028 3.972 15 C -0.499 4.499 16 H 0.059 0.941 17 C 0.074 3.926 18 N -0.873 5.873 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.148 4.148 24 C -0.211 4.211 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.399 0.601 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.262 0.738 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.280 -3.339 8.004 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.159 4.159 5 C -0.157 4.157 6 C -0.139 4.139 7 C -0.132 4.132 8 H 0.105 0.895 9 C -0.196 4.196 10 C 0.294 3.706 11 O -0.439 6.439 12 N -0.351 5.351 13 C 0.039 3.961 14 C 0.027 3.973 15 C -0.537 4.537 16 H 0.077 0.923 17 C -0.130 4.130 18 N -0.509 5.509 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.187 4.187 24 C -0.248 4.248 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.233 0.767 42 H 0.052 0.948 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.102 0.898 47 H 0.097 0.903 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.680 -4.158 8.271 18.208 hybrid contribution -0.324 0.456 -1.314 1.428 sum -16.004 -3.702 6.957 17.839 Atomic orbital electron populations 1.21783 0.96118 1.01415 1.01719 1.21551 0.95633 0.97233 1.02008 1.21630 0.95719 0.96483 1.01914 1.21613 0.94928 0.97112 1.02212 1.21649 0.95356 0.96631 1.02019 1.21424 0.94572 0.94597 1.03297 1.21282 0.93058 0.98713 1.00106 0.89501 1.21732 1.01354 1.00369 0.96133 1.20518 0.89713 0.81801 0.78614 1.90632 1.67456 1.37830 1.47937 1.46003 1.10287 1.24982 1.53794 1.20984 0.78046 1.00953 0.96133 1.19041 0.95851 0.88197 0.94233 1.20299 1.11100 1.30260 0.92003 0.92273 1.24971 0.95334 0.93928 0.98816 1.70010 1.20939 1.27616 1.32347 0.86727 0.78938 0.78010 0.84727 1.20260 1.21270 1.20170 1.22480 0.91663 1.03689 1.00819 1.23040 1.06890 0.97171 0.97732 0.92856 0.92805 0.92960 0.92069 0.92124 0.92163 0.92088 0.91974 0.92012 0.91817 0.92015 0.91694 0.90975 0.91765 0.92397 0.92082 0.76749 0.94837 0.90920 0.92822 0.91686 0.89828 0.90343 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.69 16 2 C -0.13 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.12 -0.99 5.22 -26.73 -0.14 -1.13 16 4 C -0.12 -1.15 5.21 -26.73 -0.14 -1.29 16 5 C -0.12 -1.21 4.97 -26.73 -0.13 -1.35 16 6 C -0.10 -1.33 4.26 -26.73 -0.11 -1.45 16 7 C -0.11 -1.54 2.71 -91.77 -0.25 -1.78 16 8 H 0.09 1.10 8.13 -51.93 -0.42 0.68 16 9 C -0.14 -1.61 8.78 37.15 0.33 -1.29 16 10 C 0.51 9.63 6.82 -10.98 -0.07 9.55 16 11 O -0.56 -12.68 16.38 5.56 0.09 -12.59 16 12 N -0.70 -13.85 5.42 -60.30 -0.33 -14.18 16 13 C 0.16 3.73 5.51 -4.04 -0.02 3.71 16 14 C 0.03 0.65 1.41 -155.66 -0.22 0.43 16 15 C -0.50 -12.84 8.57 -34.44 -0.30 -13.13 16 16 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 17 C 0.07 1.96 5.38 -17.82 -0.10 1.86 16 18 N -0.87 -24.37 12.90 55.43 0.71 -23.66 16 19 Si 0.89 20.55 29.55 -169.99 -5.02 15.53 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.15 -3.40 9.40 -26.69 -0.25 -3.65 16 24 C -0.21 -4.38 9.95 -26.69 -0.27 -4.65 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.59 6.70 -51.93 -0.35 0.24 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.02 8.02 -51.93 -0.42 0.60 16 38 H 0.06 0.60 6.86 -51.93 -0.36 0.24 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.40 7.14 8.36 -40.82 -0.34 6.80 16 42 H 0.03 0.76 8.11 -51.93 -0.42 0.34 16 43 H 0.07 1.93 8.14 -51.93 -0.42 1.51 16 44 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 45 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 47 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -29.09 388.49 -9.61 -38.71 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -9.46 Total: 6.32 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -1.46 Total: -15.98 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.39 Total: -37.84 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.09 -9.61 -38.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562818.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.401 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds