Wall clock time and date at job start Tue Mar 31 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47133 * 2 1 4 4 C 1.53002 * 109.47314 * 120.00463 * 2 1 3 5 5 C 1.52997 * 109.47195 * 175.00004 * 4 2 1 6 6 C 1.52997 * 109.46937 * 179.97438 * 5 4 2 7 7 C 1.53010 * 109.47280 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47280 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.46909 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99998 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99855 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99966 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47299 * 184.79547 * 12 11 9 14 14 C 1.50704 * 115.54588 * 294.81766 * 13 12 11 15 15 H 1.07999 * 119.99785 * 95.20816 * 14 13 12 16 16 C 1.37877 * 119.99726 * 274.92551 * 14 13 12 17 17 N 1.31515 * 120.00084 * 355.41881 * 16 14 13 18 18 Si 1.86796 * 120.00102 * 175.42113 * 16 14 13 19 19 H 1.48504 * 109.47025 * 89.99775 * 18 16 14 20 20 H 1.48493 * 109.47332 * 210.00070 * 18 16 14 21 21 H 1.48499 * 109.47076 * 330.00113 * 18 16 14 22 22 C 1.53001 * 117.49754 * 80.48183 * 13 12 11 23 23 C 1.52994 * 117.50156 * 149.14359 * 13 12 11 24 24 H 1.09000 * 109.47541 * 299.99785 * 1 2 3 25 25 H 1.09004 * 109.47371 * 59.99898 * 1 2 3 26 26 H 1.09005 * 109.47611 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47008 * 239.99937 * 2 1 3 28 28 H 1.09009 * 109.46885 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47394 * 299.99723 * 3 2 1 30 30 H 1.08998 * 109.46955 * 60.00456 * 3 2 1 31 31 H 1.08993 * 109.47489 * 54.99322 * 4 2 1 32 32 H 1.09006 * 109.46729 * 294.99625 * 4 2 1 33 33 H 1.09005 * 109.47561 * 59.99742 * 5 4 2 34 34 H 1.09000 * 109.47354 * 299.99245 * 5 4 2 35 35 H 1.09001 * 109.47343 * 60.00282 * 6 5 4 36 36 H 1.08995 * 109.47684 * 299.99762 * 6 5 4 37 37 H 1.09001 * 109.46476 * 60.00029 * 7 6 5 38 38 H 1.08995 * 109.46794 * 300.00584 * 7 6 5 39 39 H 1.09003 * 109.46827 * 60.00578 * 8 7 6 40 40 H 1.09000 * 109.46857 * 300.00287 * 8 7 6 41 41 H 0.96999 * 119.99492 * 359.97438 * 11 9 8 42 42 H 1.09001 * 109.47302 * 64.79393 * 12 11 9 43 43 H 1.09005 * 109.46853 * 304.79585 * 12 11 9 44 44 H 0.97004 * 120.00173 * 185.00091 * 17 16 14 45 45 H 1.09003 * 117.49648 * 214.99946 * 22 13 12 46 46 H 1.08991 * 117.50066 * 0.03054 * 22 13 12 47 47 H 1.08996 * 117.49909 * 359.97438 * 23 13 12 48 48 H 1.09006 * 117.50020 * 144.97002 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 6 4.0748 -1.5519 2.4373 7 6 5.5997 -1.6623 2.3758 8 6 6.1096 -2.3836 3.6250 9 6 7.6116 -2.4917 3.5646 10 8 8.2146 -2.0370 2.6156 11 7 8.2845 -3.0946 4.5646 12 6 9.7446 -3.1992 4.5062 13 6 10.2447 -4.0246 5.6935 14 6 10.0205 -3.4114 7.0517 15 1 9.1491 -3.6823 7.6293 16 6 10.9309 -2.5090 7.5594 17 7 12.0392 -2.2513 6.8999 18 14 10.5904 -1.6524 9.1841 19 1 11.1474 -2.4625 10.2971 20 1 11.2285 -0.3116 9.1801 21 1 9.1243 -1.5023 9.3668 22 6 10.1551 -5.5479 5.5826 23 6 11.5157 -4.8523 5.4931 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9562 0.8900 31 1 1.6053 -1.7198 1.2951 32 1 1.7516 -0.1584 2.1370 33 1 3.9995 0.1674 1.1420 34 1 3.8532 -1.3941 0.3002 35 1 3.6403 -2.5505 2.4836 36 1 3.7866 -0.9887 3.3249 37 1 6.0345 -0.6639 2.3293 38 1 5.8876 -2.2257 1.4883 39 1 5.6747 -3.3820 3.6709 40 1 5.8216 -1.8205 4.5127 41 1 7.8021 -3.4585 5.3234 42 1 10.1823 -2.2018 4.5470 43 1 10.0370 -3.6865 3.5760 44 1 12.7127 -1.6727 7.2905 45 1 9.9342 -6.1066 6.4921 46 1 9.7404 -5.9621 4.6637 47 1 11.9954 -4.8092 4.5153 48 1 12.1901 -4.9530 6.3436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797563784.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:20 Heat of formation + Delta-G solvation = -68.081695 kcal Electronic energy + Delta-G solvation = -21535.047799 eV Core-core repulsion = 18395.687351 eV Total energy + Delta-G solvation = -3139.360448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.12662 -37.56109 -36.69906 -34.79707 -33.23416 -31.97049 -31.13816 -27.54428 -27.39126 -25.93129 -24.98753 -22.63431 -21.17487 -20.97250 -20.13354 -19.64444 -19.14600 -16.62089 -16.13198 -15.98015 -15.37417 -14.94980 -14.74069 -14.52681 -14.46834 -13.91982 -13.81446 -13.28637 -13.03172 -12.68129 -12.62310 -12.43715 -12.11878 -12.04725 -11.72346 -11.64842 -11.55034 -11.23800 -11.08036 -11.00787 -10.94460 -10.81575 -10.70196 -10.54556 -10.49516 -10.43461 -10.24051 -9.59483 -9.21744 -9.04771 -8.50001 -8.24904 -8.06896 -6.08301 -4.18221 3.24319 3.26539 3.32680 3.33886 3.90699 4.33998 4.47146 4.60658 4.66820 4.92335 5.00682 5.05500 5.19368 5.22907 5.28591 5.34292 5.37323 5.42569 5.49534 5.51328 5.57213 5.66027 5.71557 5.77125 5.79432 5.89092 5.93883 5.98116 6.01406 6.06046 6.14424 6.20990 6.33684 6.35168 6.45096 6.48375 6.57513 6.70354 6.89257 7.11873 7.31386 7.40072 7.53323 7.80060 8.32593 8.34533 8.82828 8.93166 9.48832 10.98856 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024006 B = 0.002548 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.083051 B =10988.302119 C =11565.464681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.150 4.150 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.120 4.120 7 C -0.102 4.102 8 C -0.141 4.141 9 C 0.501 3.499 10 O -0.561 6.561 11 N -0.706 5.706 12 C 0.163 3.837 13 C 0.023 3.977 14 C -0.499 4.499 15 H 0.060 0.940 16 C 0.072 3.928 17 N -0.875 5.875 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.211 4.211 23 C -0.143 4.143 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.401 0.599 42 H 0.066 0.934 43 H 0.039 0.961 44 H 0.261 0.739 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.938 1.940 -9.425 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.207 4.207 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.140 4.140 8 C -0.181 4.181 9 C 0.286 3.714 10 O -0.441 6.441 11 N -0.354 5.354 12 C 0.039 3.961 13 C 0.023 3.977 14 C -0.537 4.537 15 H 0.078 0.922 16 C -0.132 4.132 17 N -0.511 5.511 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.248 4.248 23 C -0.181 4.181 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.234 0.766 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.332 2.432 -10.113 21.077 hybrid contribution -0.168 0.280 1.373 1.412 sum -18.501 2.711 -8.740 20.640 Atomic orbital electron populations 1.21849 0.95512 1.01562 1.01584 1.21140 0.95438 0.96520 0.98665 1.21901 1.01468 0.95901 1.01459 1.21667 0.95785 1.00252 0.97542 1.21651 0.95006 1.00989 0.98250 1.21627 0.95560 1.00513 0.98038 1.21316 0.94184 1.01374 0.97141 1.21675 0.93036 1.02680 1.00711 1.20631 0.89808 0.78202 0.82723 1.90646 1.70617 1.48816 1.33991 1.46031 1.09069 1.57792 1.22531 1.20974 0.77838 1.00832 0.96416 1.19058 0.97840 0.86700 0.94142 1.20344 1.08759 1.24374 1.00231 0.92208 1.25002 0.95143 0.95974 0.97073 1.69993 1.07279 1.36613 1.37180 0.86617 0.78577 0.79178 0.83792 1.20694 1.21177 1.19786 1.23012 1.03425 0.98334 1.00044 1.22465 0.90602 1.04817 1.00207 0.92786 0.92914 0.92815 0.91343 0.92219 0.93054 0.92785 0.92126 0.92058 0.91696 0.92052 0.92138 0.92057 0.91360 0.91453 0.89469 0.89275 0.76554 0.91585 0.94305 0.92870 0.90405 0.91756 0.91845 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.19 37.15 0.34 -0.62 16 2 C -0.10 -0.72 2.92 -90.62 -0.26 -0.99 16 3 C -0.15 -1.09 8.95 37.16 0.33 -0.76 16 4 C -0.11 -0.89 4.68 -26.73 -0.13 -1.02 16 5 C -0.12 -1.08 4.97 -26.73 -0.13 -1.21 16 6 C -0.12 -1.15 5.21 -26.73 -0.14 -1.29 16 7 C -0.10 -1.27 4.50 -26.73 -0.12 -1.39 16 8 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 9 C 0.50 9.24 7.83 -10.98 -0.09 9.15 16 10 O -0.56 -12.46 15.98 5.55 0.09 -12.37 16 11 N -0.71 -13.67 5.48 -60.29 -0.33 -14.00 16 12 C 0.16 3.72 5.50 -4.04 -0.02 3.70 16 13 C 0.02 0.55 1.47 -155.66 -0.23 0.32 16 14 C -0.50 -12.83 8.59 -34.44 -0.30 -13.12 16 15 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 16 C 0.07 1.92 5.43 -17.82 -0.10 1.82 16 17 N -0.87 -24.33 12.65 55.43 0.70 -23.63 16 18 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 C -0.21 -4.42 9.96 -26.69 -0.27 -4.68 16 23 C -0.14 -3.30 9.14 -26.70 -0.24 -3.55 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.06 0.46 6.57 -51.92 -0.34 0.12 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.60 6.57 -51.93 -0.34 0.26 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 38 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.40 7.05 8.33 -40.82 -0.34 6.71 16 42 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 43 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 44 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 45 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -29.06 387.47 -9.67 -38.73 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -9.44 Total: 5.57 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -1.51 Total: -15.64 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.37 Total: -37.63 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.06 -9.67 -38.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563784.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.350 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds