Wall clock time and date at job start Tue Mar 31 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47202 * 240.00102 * 3 2 1 5 5 H 1.48505 * 109.46859 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47010 * 119.99895 * 3 2 1 7 7 C 1.37880 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99811 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00238 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47633 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47584 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47231 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47274 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99699 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00080 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99969 * 180.02562 * 15 13 12 17 17 C 1.53019 * 109.46790 * 274.72208 * 16 15 13 18 18 C 1.52992 * 109.45771 * 164.04678 * 17 16 15 19 19 C 1.52991 * 109.50950 * 315.98477 * 18 17 16 20 20 C 1.53000 * 109.46733 * 112.93679 * 19 18 17 21 21 C 1.53000 * 109.43481 * 284.04295 * 20 19 18 22 22 C 1.52991 * 109.48473 * 75.96433 * 21 20 19 23 23 C 1.52997 * 109.50189 * 247.06544 * 22 21 20 24 24 H 0.96995 * 119.99960 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47256 * 60.00032 * 9 7 2 26 26 H 1.09006 * 109.46765 * 300.00429 * 9 7 2 27 27 H 1.08999 * 109.47180 * 59.99305 * 10 9 7 28 28 H 1.09010 * 109.46901 * 300.00344 * 10 9 7 29 29 H 1.09004 * 109.46699 * 59.99800 * 11 10 9 30 30 H 1.08993 * 109.47124 * 299.99951 * 11 10 9 31 31 H 1.09004 * 109.47116 * 60.00455 * 12 11 10 32 32 H 1.08998 * 109.47794 * 300.00366 * 12 11 10 33 33 H 0.97005 * 120.00161 * 359.72088 * 15 13 12 34 34 H 1.08999 * 109.47194 * 34.71875 * 16 15 13 35 35 H 1.08996 * 109.47175 * 284.04478 * 17 16 15 36 36 H 1.09000 * 109.47246 * 44.04860 * 17 16 15 37 37 H 1.08998 * 109.46268 * 195.97772 * 18 17 16 38 38 H 1.08990 * 109.46034 * 75.99125 * 18 17 16 39 39 H 1.08996 * 109.46812 * 352.93925 * 19 18 17 40 40 H 1.09002 * 109.47143 * 232.93800 * 19 18 17 41 41 H 1.09008 * 109.47830 * 164.05268 * 20 19 18 42 42 H 1.09002 * 109.48767 * 44.03765 * 20 19 18 43 43 H 1.08997 * 109.46891 * 315.95785 * 21 20 19 44 44 H 1.09007 * 109.46950 * 195.96200 * 21 20 19 45 45 H 1.09003 * 109.46488 * 127.05747 * 22 21 20 46 46 H 1.08995 * 109.46217 * 7.07251 * 22 21 20 47 47 H 1.09001 * 109.47457 * 284.01131 * 23 22 21 48 48 H 1.09000 * 109.47303 * 164.01242 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4744 -6.1500 -0.0005 13 6 1.7209 -7.4552 -0.0005 14 8 0.5081 -7.4551 -0.0005 15 7 2.3948 -8.6223 -0.0005 16 6 1.6623 -9.8911 -0.0011 17 6 1.3039 -10.2737 1.4365 18 6 0.2216 -11.3550 1.4214 19 6 -0.8496 -10.9913 0.3914 20 6 -0.8152 -12.0004 -0.7581 21 6 0.3833 -11.7025 -1.6613 22 6 1.6661 -12.1881 -0.9835 23 6 2.5371 -10.9849 -0.6170 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 2.8719 -3.6044 0.8894 28 1 2.8719 -3.6044 -0.8906 29 1 0.8533 -5.0450 -0.8897 30 1 0.8539 -5.0446 0.8903 31 1 3.1017 -6.0922 0.8891 32 1 3.1005 -6.0924 -0.8909 33 1 3.3648 -8.6223 -0.0046 34 1 0.7493 -9.7833 -0.5867 35 1 2.1907 -10.6543 1.9430 36 1 0.9327 -9.3953 1.9645 37 1 -0.2338 -11.4268 2.4091 38 1 0.6691 -12.3130 1.1571 39 1 -0.6557 -9.9914 0.0032 40 1 -1.8312 -11.0131 0.8649 41 1 -1.7352 -11.9227 -1.3377 42 1 -0.7243 -13.0087 -0.3542 43 1 0.4487 -10.6286 -1.8357 44 1 0.2579 -12.2183 -2.6133 45 1 2.2136 -12.8385 -1.6658 46 1 1.4121 -12.7415 -0.0795 47 1 3.0218 -10.6003 -1.5144 48 1 3.2961 -11.2915 0.1027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805150873.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:05 Heat of formation + Delta-G solvation = -76.107762 kcal Electronic energy + Delta-G solvation = -22363.136658 eV Core-core repulsion = 19223.428174 eV Total energy + Delta-G solvation = -3139.708484 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.44527 -38.69477 -35.05513 -34.63140 -33.11720 -32.61748 -31.70593 -29.61383 -26.62837 -26.21831 -25.14867 -22.46321 -22.09736 -21.13753 -20.11869 -19.90788 -19.64090 -16.97193 -16.76840 -16.12027 -15.67064 -15.27296 -14.67477 -14.45841 -14.40850 -14.38363 -13.94564 -13.62989 -13.55854 -13.09200 -12.59654 -12.27400 -12.14501 -11.98363 -11.66107 -11.63785 -11.53116 -11.43948 -11.38395 -11.03670 -10.94340 -10.69998 -10.51525 -10.48645 -10.37185 -10.32621 -9.99272 -9.70359 -9.57568 -9.18092 -9.00794 -8.95728 -8.27953 -5.92877 -3.95387 2.80177 3.19093 3.36811 3.41047 3.43395 4.27055 4.50748 4.51094 4.58676 4.75330 4.81383 4.89361 4.94321 4.96548 5.01985 5.07133 5.37496 5.39942 5.41146 5.42122 5.43472 5.56524 5.60012 5.65242 5.70354 5.75016 5.82990 5.88348 5.91697 5.99292 6.02673 6.09954 6.18220 6.23353 6.33817 6.36618 6.48934 6.59895 6.88120 7.06222 7.23561 7.53553 7.76515 7.93237 8.08814 8.35541 8.50594 9.12209 9.68024 11.18476 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037861 B = 0.002497 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.362741 B =11211.218482 C =11463.747980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.140 4.140 13 C 0.511 3.489 14 O -0.536 6.536 15 N -0.737 5.737 16 C 0.121 3.879 17 C -0.129 4.129 18 C -0.122 4.122 19 C -0.136 4.136 20 C -0.118 4.118 21 C -0.133 4.133 22 C -0.123 4.123 23 C -0.126 4.126 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.397 0.603 34 H 0.113 0.887 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.067 0.933 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.001 -28.361 -0.388 28.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.180 4.180 13 C 0.299 3.701 14 O -0.411 6.411 15 N -0.389 5.389 16 C 0.017 3.983 17 C -0.167 4.167 18 C -0.160 4.160 19 C -0.173 4.173 20 C -0.156 4.156 21 C -0.170 4.170 22 C -0.161 4.161 23 C -0.165 4.165 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.230 0.770 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.953 -28.226 -0.388 28.504 hybrid contribution 1.024 0.944 0.075 1.395 sum 4.977 -27.282 -0.313 27.734 Atomic orbital electron populations 1.69964 1.06048 1.26606 1.50888 1.25043 0.94839 0.99207 0.95478 0.86673 0.79577 0.83272 0.78540 1.20287 1.21322 1.20294 1.21254 0.92938 0.91237 1.50472 0.92828 1.19089 0.94057 0.91254 0.97286 1.21650 0.99066 0.94069 1.00011 1.21437 0.97019 0.92712 1.02899 1.21798 1.00085 0.92231 1.03846 1.21078 0.88500 0.85619 0.74905 1.90690 1.14176 1.87677 1.48594 1.46239 1.10062 1.05718 1.76835 1.21657 0.97082 0.82519 0.97032 1.22003 0.98711 0.99327 0.96678 1.21790 0.96183 0.98788 0.99220 1.21889 0.98768 1.00509 0.96169 1.21704 0.98017 0.98977 0.96879 1.21867 0.94518 1.02121 0.98492 1.21802 0.96010 0.97231 1.01047 1.21896 0.98127 0.95536 1.00891 0.92994 0.96608 0.96619 0.93534 0.93523 0.91852 0.91855 0.89283 0.89284 0.76998 0.86962 0.92117 0.91482 0.92233 0.91043 0.89894 0.92239 0.92175 0.91976 0.90820 0.92192 0.91967 0.90609 0.91417 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.29 55.43 0.74 -27.07 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.41 16 10 C -0.11 -2.31 5.15 -26.74 -0.14 -2.45 16 11 C -0.10 -1.88 4.50 -26.74 -0.12 -2.00 16 12 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 13 C 0.51 7.15 7.73 -10.98 -0.08 7.07 16 14 O -0.54 -9.65 15.64 5.56 0.09 -9.56 16 15 N -0.74 -7.47 5.08 -53.79 -0.27 -7.74 16 16 C 0.12 1.14 1.86 -67.91 -0.13 1.02 16 17 C -0.13 -1.21 5.30 -26.73 -0.14 -1.35 16 18 C -0.12 -1.01 5.48 -26.74 -0.15 -1.16 16 19 C -0.14 -1.26 5.47 -26.74 -0.15 -1.41 16 20 C -0.12 -0.91 5.59 -26.73 -0.15 -1.06 16 21 C -0.13 -1.00 5.47 -26.74 -0.15 -1.15 16 22 C -0.12 -0.80 5.48 -26.74 -0.15 -0.94 16 23 C -0.13 -0.88 5.18 -26.73 -0.14 -1.02 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 29 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.81 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.40 2.91 8.60 -40.82 -0.35 2.56 16 34 H 0.11 1.28 2.26 -51.93 -0.12 1.16 16 35 H 0.06 0.49 7.82 -51.93 -0.41 0.09 16 36 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.50 4.69 -51.93 -0.24 0.25 16 39 H 0.08 0.98 5.47 -51.93 -0.28 0.70 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 42 H 0.06 0.41 7.47 -51.93 -0.39 0.03 16 43 H 0.07 0.68 5.47 -51.93 -0.28 0.40 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.46 4.69 -51.93 -0.24 0.22 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.40 7.82 -51.93 -0.41 -0.01 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -33.08 359.66 -9.84 -42.92 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -8.60 Total: -0.99 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -2.19 Total: -20.05 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.46 Total: -34.81 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.08 -9.84 -42.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805150873.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.185 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds