Wall clock time and date at job start Tue Mar 31 2020 05:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00055 * 2 1 4 4 H 1.48496 * 109.47232 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47183 * 299.99967 * 3 2 1 6 6 H 1.48501 * 109.47294 * 59.99806 * 3 2 1 7 7 C 1.37871 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00178 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00268 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47220 * 299.99875 * 9 7 2 11 11 O 1.42903 * 109.46829 * 59.99913 * 9 7 2 12 12 C 1.52999 * 109.47477 * 180.02562 * 9 7 2 13 13 N 1.46897 * 109.47160 * 180.02562 * 12 9 7 14 14 C 1.48567 * 111.00170 * 76.39502 * 13 12 9 15 15 C 1.54372 * 104.59749 * 159.03774 * 14 13 12 16 16 C 1.54261 * 105.06074 * 336.15116 * 15 14 13 17 17 C 1.48560 * 111.00124 * 191.81373 * 13 12 9 18 18 H 1.09008 * 110.41121 * 319.73659 * 17 13 12 19 19 C 1.52998 * 110.51248 * 82.12809 * 17 13 12 20 20 C 1.53000 * 109.47048 * 61.09241 * 19 17 13 21 21 C 1.53006 * 109.47086 * 292.62337 * 20 19 17 22 22 C 1.53000 * 109.47086 * 179.97438 * 21 20 19 23 23 C 1.53006 * 109.47047 * 59.99525 * 22 21 20 24 24 C 1.53001 * 109.47235 * 300.00095 * 23 22 21 25 25 C 1.52996 * 109.47136 * 172.61852 * 20 19 17 26 26 H 0.97004 * 120.00162 * 0.02562 * 1 2 3 27 27 H 0.96696 * 114.00320 * 60.00618 * 11 9 7 28 28 H 1.08996 * 109.47086 * 59.99853 * 12 9 7 29 29 H 1.09003 * 109.46629 * 300.00035 * 12 9 7 30 30 H 1.08998 * 110.41071 * 40.25954 * 14 13 12 31 31 H 1.08996 * 110.40926 * 277.81855 * 14 13 12 32 32 H 1.08998 * 110.32277 * 95.03832 * 15 14 13 33 33 H 1.08995 * 110.32679 * 217.14727 * 15 14 13 34 34 H 1.08998 * 110.33006 * 118.89384 * 16 15 14 35 35 H 1.09008 * 110.32244 * 240.99888 * 16 15 14 36 36 H 1.08996 * 109.46929 * 181.09078 * 19 17 13 37 37 H 1.09000 * 109.47083 * 301.09040 * 19 17 13 38 38 H 1.09003 * 109.47066 * 52.62179 * 20 19 17 39 39 H 1.08994 * 109.46813 * 299.99739 * 21 20 19 40 40 H 1.08999 * 109.47029 * 59.99555 * 21 20 19 41 41 H 1.09003 * 109.47066 * 299.99842 * 22 21 20 42 42 H 1.08994 * 109.46783 * 179.97438 * 22 21 20 43 43 H 1.08997 * 109.46820 * 179.97438 * 23 22 21 44 44 H 1.09003 * 109.46929 * 60.00234 * 23 22 21 45 45 H 1.08994 * 109.47049 * 300.00046 * 24 23 22 46 46 H 1.08999 * 109.46699 * 180.02562 * 24 23 22 47 47 H 1.09000 * 109.47382 * 300.00275 * 25 20 19 48 48 H 1.09003 * 109.46876 * 60.00211 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4299 -2.5750 -1.1666 12 6 2.2452 -3.6621 0.0018 13 7 1.5107 -4.9342 0.0012 14 6 0.9634 -5.2324 -1.3474 15 6 0.7202 -6.7568 -1.3402 16 6 1.6783 -7.3105 -0.2655 17 6 2.4198 -6.0741 0.2863 18 1 3.3710 -5.9399 -0.2291 19 6 2.6459 -6.2156 1.7929 20 6 1.3096 -6.4899 2.4856 21 6 0.4156 -5.2529 2.3773 22 6 -0.9210 -5.5274 3.0694 23 6 -0.6745 -5.8511 4.5444 24 6 0.2194 -7.0881 4.6526 25 6 1.5565 -6.8133 3.9604 26 1 -0.4850 0.8401 -0.0004 27 1 0.9223 -2.5299 -1.9976 28 1 2.8712 -3.6039 0.8922 29 1 2.8726 -3.6047 -0.8877 30 1 1.6866 -4.9665 -2.1184 31 1 0.0261 -4.6986 -1.5038 32 1 -0.3140 -6.9739 -1.0733 33 1 0.9562 -7.1825 -2.3155 34 1 1.1143 -7.7994 0.5289 35 1 2.3852 -8.0097 -0.7124 36 1 3.3295 -7.0434 1.9815 37 1 3.0754 -5.2933 2.1841 38 1 0.8184 -7.3363 2.0054 39 1 0.9068 -4.4066 2.8575 40 1 0.2398 -5.0226 1.3265 41 1 -1.4119 -6.3736 2.5888 42 1 -1.5576 -4.6460 2.9926 43 1 -1.6268 -6.0462 5.0375 44 1 -0.1836 -5.0049 5.0250 45 1 -0.2716 -7.9343 4.1720 46 1 0.3945 -7.3190 5.7033 47 1 2.1933 -7.6945 4.0375 48 1 2.0477 -5.9669 4.4406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809573568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:54 Heat of formation + Delta-G solvation = -70.441012 kcal Electronic energy + Delta-G solvation = -24322.811902 eV Core-core repulsion = 21183.349146 eV Total energy + Delta-G solvation = -3139.462756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.63631 -37.56029 -35.53928 -32.66073 -32.07353 -31.58270 -30.25515 -28.63860 -27.74674 -24.98171 -24.21597 -22.17041 -21.56678 -21.03839 -20.14714 -19.50842 -18.83296 -16.88564 -15.86088 -14.99712 -14.76246 -14.59847 -14.41377 -14.28653 -13.92969 -13.77017 -13.40547 -13.27546 -13.02229 -12.54326 -12.34494 -12.04870 -11.71519 -11.64079 -11.38334 -11.17803 -10.97355 -10.89510 -10.88314 -10.73825 -10.70110 -10.66913 -10.41526 -10.34788 -10.24254 -9.94698 -9.74072 -9.63643 -9.53416 -8.95852 -8.54233 -8.05967 -7.42882 -5.97738 -4.15551 3.27582 3.36098 3.39008 4.36533 4.57303 4.83737 4.97609 5.06248 5.12041 5.17559 5.28244 5.29492 5.49115 5.54284 5.60356 5.74680 5.78987 5.83576 5.85404 5.91030 5.93366 5.99647 6.03085 6.10518 6.11399 6.18336 6.20626 6.30199 6.31663 6.35716 6.39092 6.46591 6.50322 6.52165 6.64614 6.66491 6.73673 6.83740 6.94274 7.06977 7.47753 7.58472 7.62193 7.79932 7.98940 8.24796 8.88098 9.42814 9.61995 11.06180 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016247 B = 0.005569 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.993277 B = 5026.518234 C = 5881.150690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.081 3.919 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.572 4.572 8 H 0.053 0.947 9 C 0.240 3.760 10 H 0.064 0.936 11 O -0.560 6.560 12 C 0.019 3.981 13 N -0.482 5.482 14 C 0.034 3.966 15 C -0.126 4.126 16 C -0.125 4.125 17 C 0.056 3.944 18 H 0.042 0.958 19 C -0.100 4.100 20 C -0.074 4.074 21 C -0.136 4.136 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.114 4.114 25 C -0.117 4.117 26 H 0.259 0.741 27 H 0.338 0.662 28 H 0.066 0.934 29 H 0.023 0.977 30 H 0.032 0.968 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.133 0.867 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.050 0.950 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.062 -15.184 3.160 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.125 4.125 3 Si 0.713 3.287 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.611 4.611 8 H 0.071 0.929 9 C 0.182 3.818 10 H 0.082 0.918 11 O -0.362 6.362 12 C -0.109 4.109 13 N -0.206 5.206 14 C -0.093 4.093 15 C -0.164 4.164 16 C -0.163 4.163 17 C -0.052 4.052 18 H 0.060 0.940 19 C -0.138 4.138 20 C -0.092 4.092 21 C -0.174 4.174 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.152 4.152 25 C -0.154 4.154 26 H 0.069 0.931 27 H 0.181 0.819 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.150 0.850 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.010 -15.056 4.031 15.619 hybrid contribution 1.822 1.033 -0.823 2.251 sum 2.833 -14.022 3.208 14.661 Atomic orbital electron populations 1.70091 1.05829 1.26168 1.47156 1.25000 0.94646 0.98947 0.93925 0.86674 0.80225 0.84134 0.77663 1.19828 1.20951 1.20906 1.21682 0.93084 0.91715 1.54594 0.92904 1.19335 0.87942 0.88314 0.86227 0.91835 1.86593 1.38405 1.96019 1.15149 1.23250 0.97389 0.90714 0.99511 1.65492 1.29168 1.01369 1.24527 1.23249 1.01631 0.94329 0.90129 1.22335 0.99807 0.96309 0.97993 1.22471 0.98205 0.96992 0.98625 1.22664 0.94806 0.91930 0.95851 0.94025 1.21502 0.97270 1.00986 0.93995 1.21102 0.95610 0.99182 0.93339 1.22287 0.93157 0.95716 1.06207 1.21555 0.99032 1.00587 0.94381 1.21566 0.98622 0.97727 0.97870 1.21486 0.96329 0.98031 0.99353 1.21651 0.96564 1.00513 0.96722 0.93128 0.81892 0.91592 0.95919 0.94926 0.88111 0.91506 0.92386 0.90472 0.92499 0.92697 0.91890 0.91570 0.93248 0.84987 0.93094 0.92428 0.93144 0.92354 0.92580 0.93023 0.93115 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.18 12.84 55.43 0.71 -24.47 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.57 -15.52 8.76 -34.44 -0.30 -15.82 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.24 5.88 3.10 -27.88 -0.09 5.80 16 10 H 0.06 1.76 8.14 -51.93 -0.42 1.34 16 11 O -0.56 -13.74 10.06 -35.23 -0.35 -14.10 16 12 C 0.02 0.39 4.57 -3.83 -0.02 0.37 16 13 N -0.48 -8.15 1.31 -222.14 -0.29 -8.44 16 14 C 0.03 0.55 5.36 -2.18 -0.01 0.54 16 15 C -0.13 -1.65 7.00 -25.35 -0.18 -1.83 16 16 C -0.13 -1.56 6.36 -25.35 -0.16 -1.72 16 17 C 0.06 0.81 2.58 -66.07 -0.17 0.64 16 18 H 0.04 0.62 8.00 -51.92 -0.42 0.21 16 19 C -0.10 -1.36 4.76 -26.73 -0.13 -1.48 16 20 C -0.07 -1.00 1.99 -90.62 -0.18 -1.18 16 21 C -0.14 -2.19 4.67 -26.73 -0.12 -2.32 16 22 C -0.12 -1.74 5.92 -26.73 -0.16 -1.90 16 23 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 24 C -0.11 -1.34 5.93 -26.70 -0.16 -1.50 16 25 C -0.12 -1.43 5.20 -26.71 -0.14 -1.57 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.34 7.54 8.97 45.56 0.41 7.95 16 28 H 0.07 1.33 7.12 -51.93 -0.37 0.96 16 29 H 0.02 0.46 7.72 -51.93 -0.40 0.05 16 30 H 0.03 0.53 7.72 -51.93 -0.40 0.12 16 31 H 0.10 1.82 6.63 -51.93 -0.34 1.48 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.94 5.34 -51.93 -0.28 0.66 16 35 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.95 7.24 -51.93 -0.38 0.57 16 38 H 0.07 0.88 5.58 -51.93 -0.29 0.59 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.13 2.42 4.87 -51.93 -0.25 2.16 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -28.18 351.82 -9.90 -38.08 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -8.18 Total: 9.04 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -2.07 Total: -21.55 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.42 Total: -32.91 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.35 Total: -14.10 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.18 -9.90 -38.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809573568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.365 kcal (2) G-P(sol) polarization free energy of solvation -28.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds