Wall clock time and date at job start Tue Mar 31 2020 05:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00055 * 2 1 4 4 H 1.48496 * 109.47232 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47183 * 299.99967 * 3 2 1 6 6 H 1.48501 * 109.47294 * 59.99806 * 3 2 1 7 7 C 1.37871 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00178 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00268 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47220 * 299.99875 * 9 7 2 11 11 O 1.42903 * 109.46829 * 59.99913 * 9 7 2 12 12 C 1.52999 * 109.47477 * 180.02562 * 9 7 2 13 13 N 1.46897 * 109.47160 * 180.02562 * 12 9 7 14 14 C 1.48567 * 111.00170 * 76.39502 * 13 12 9 15 15 C 1.54372 * 104.59749 * 159.03774 * 14 13 12 16 16 C 1.54261 * 105.06074 * 336.15116 * 15 14 13 17 17 C 1.48560 * 111.00124 * 191.81373 * 13 12 9 18 18 H 1.09008 * 110.41121 * 319.73659 * 17 13 12 19 19 C 1.52998 * 110.51248 * 82.12809 * 17 13 12 20 20 C 1.53000 * 109.47048 * 61.09241 * 19 17 13 21 21 C 1.53006 * 109.47086 * 292.62337 * 20 19 17 22 22 C 1.53000 * 109.47086 * 179.97438 * 21 20 19 23 23 C 1.53006 * 109.47047 * 59.99525 * 22 21 20 24 24 C 1.53001 * 109.47235 * 300.00095 * 23 22 21 25 25 C 1.52996 * 109.47136 * 172.61852 * 20 19 17 26 26 H 0.97004 * 120.00162 * 0.02562 * 1 2 3 27 27 H 0.96696 * 114.00320 * 60.00618 * 11 9 7 28 28 H 1.08996 * 109.47086 * 59.99853 * 12 9 7 29 29 H 1.09003 * 109.46629 * 300.00035 * 12 9 7 30 30 H 1.08998 * 110.41071 * 40.25954 * 14 13 12 31 31 H 1.08996 * 110.40926 * 277.81855 * 14 13 12 32 32 H 1.08998 * 110.32277 * 95.03832 * 15 14 13 33 33 H 1.08995 * 110.32679 * 217.14727 * 15 14 13 34 34 H 1.08998 * 110.33006 * 118.89384 * 16 15 14 35 35 H 1.09008 * 110.32244 * 240.99888 * 16 15 14 36 36 H 1.08996 * 109.46929 * 181.09078 * 19 17 13 37 37 H 1.09000 * 109.47083 * 301.09040 * 19 17 13 38 38 H 1.09003 * 109.47066 * 52.62179 * 20 19 17 39 39 H 1.08994 * 109.46813 * 299.99739 * 21 20 19 40 40 H 1.08999 * 109.47029 * 59.99555 * 21 20 19 41 41 H 1.09003 * 109.47066 * 299.99842 * 22 21 20 42 42 H 1.08994 * 109.46783 * 179.97438 * 22 21 20 43 43 H 1.08997 * 109.46820 * 179.97438 * 23 22 21 44 44 H 1.09003 * 109.46929 * 60.00234 * 23 22 21 45 45 H 1.08994 * 109.47049 * 300.00046 * 24 23 22 46 46 H 1.08999 * 109.46699 * 180.02562 * 24 23 22 47 47 H 1.09000 * 109.47382 * 300.00275 * 25 20 19 48 48 H 1.09003 * 109.46876 * 60.00211 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4299 -2.5750 -1.1666 12 6 2.2452 -3.6621 0.0018 13 7 1.5107 -4.9342 0.0012 14 6 0.9634 -5.2324 -1.3474 15 6 0.7202 -6.7568 -1.3402 16 6 1.6783 -7.3105 -0.2655 17 6 2.4198 -6.0741 0.2863 18 1 3.3710 -5.9399 -0.2291 19 6 2.6459 -6.2156 1.7929 20 6 1.3096 -6.4899 2.4856 21 6 0.4156 -5.2529 2.3773 22 6 -0.9210 -5.5274 3.0694 23 6 -0.6745 -5.8511 4.5444 24 6 0.2194 -7.0881 4.6526 25 6 1.5565 -6.8133 3.9604 26 1 -0.4850 0.8401 -0.0004 27 1 0.9223 -2.5299 -1.9976 28 1 2.8712 -3.6039 0.8922 29 1 2.8726 -3.6047 -0.8877 30 1 1.6866 -4.9665 -2.1184 31 1 0.0261 -4.6986 -1.5038 32 1 -0.3140 -6.9739 -1.0733 33 1 0.9562 -7.1825 -2.3155 34 1 1.1143 -7.7994 0.5289 35 1 2.3852 -8.0097 -0.7124 36 1 3.3295 -7.0434 1.9815 37 1 3.0754 -5.2933 2.1841 38 1 0.8184 -7.3363 2.0054 39 1 0.9068 -4.4066 2.8575 40 1 0.2398 -5.0226 1.3265 41 1 -1.4119 -6.3736 2.5888 42 1 -1.5576 -4.6460 2.9926 43 1 -1.6268 -6.0462 5.0375 44 1 -0.1836 -5.0049 5.0250 45 1 -0.2716 -7.9343 4.1720 46 1 0.3945 -7.3190 5.7033 47 1 2.1933 -7.6945 4.0375 48 1 2.0477 -5.9669 4.4406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809573568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:53 Heat of formation + Delta-G solvation = -85.153178 kcal Electronic energy + Delta-G solvation = -24323.449869 eV Core-core repulsion = 21183.349146 eV Total energy + Delta-G solvation = -3140.100723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87463 -38.79582 -37.36493 -34.27717 -33.75332 -33.02647 -31.37685 -29.79133 -29.57469 -26.43350 -25.79832 -23.29427 -22.81662 -22.56342 -21.57040 -20.68469 -20.02349 -18.90258 -17.13654 -16.67307 -16.39715 -16.07406 -15.89807 -15.74266 -15.20422 -15.06020 -14.77398 -14.57427 -14.39988 -13.83604 -13.74510 -13.45743 -13.15726 -13.03055 -12.87500 -12.81206 -12.68877 -12.39300 -12.21189 -12.02406 -12.00424 -11.84884 -11.82475 -11.76020 -11.41240 -11.37710 -11.02932 -10.86274 -10.75592 -10.70816 -10.66313 -9.99254 -8.80519 -8.12537 -6.38024 1.37331 1.38869 1.50477 2.37693 3.13126 3.22539 3.72302 3.87043 3.97710 4.03584 4.10375 4.21730 4.28628 4.36841 4.41572 4.45295 4.55554 4.59846 4.67028 4.69628 4.78865 4.81483 4.82511 4.84664 4.93974 4.97167 5.03901 5.10481 5.13991 5.16721 5.23762 5.29020 5.31647 5.38212 5.40531 5.44658 5.52890 5.53568 5.63416 5.66997 5.79855 5.85766 6.04809 6.20520 6.24987 6.31560 6.75550 7.34677 7.58052 8.91604 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016247 B = 0.005569 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.993277 B = 5026.518234 C = 5881.150690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.028 3.972 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.587 4.587 8 H 0.054 0.946 9 C 0.246 3.754 10 H 0.021 0.979 11 O -0.569 6.569 12 C 0.041 3.959 13 N -0.489 5.489 14 C 0.033 3.967 15 C -0.118 4.118 16 C -0.116 4.116 17 C 0.053 3.947 18 H 0.041 0.959 19 C -0.097 4.097 20 C -0.066 4.066 21 C -0.132 4.132 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.110 4.110 25 C -0.115 4.115 26 H 0.260 0.740 27 H 0.347 0.653 28 H 0.059 0.941 29 H 0.022 0.978 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.014 0.986 40 H 0.110 0.890 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 -17.489 3.261 18.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.174 4.174 3 Si 0.781 3.219 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.625 4.625 8 H 0.072 0.928 9 C 0.188 3.812 10 H 0.039 0.961 11 O -0.372 6.372 12 C -0.087 4.087 13 N -0.213 5.213 14 C -0.095 4.095 15 C -0.157 4.157 16 C -0.154 4.154 17 C -0.055 4.055 18 H 0.059 0.941 19 C -0.135 4.135 20 C -0.084 4.084 21 C -0.170 4.170 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.148 4.148 25 C -0.153 4.153 26 H 0.069 0.931 27 H 0.191 0.809 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.033 0.967 40 H 0.127 0.873 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.234 -17.374 4.128 17.997 hybrid contribution 1.404 1.757 -0.868 2.411 sum 3.638 -15.616 3.261 16.363 Atomic orbital electron populations 1.70228 1.07537 1.27116 1.48518 1.25841 0.95433 1.02677 0.93484 0.85571 0.79124 0.79517 0.77713 1.18916 1.20361 1.20606 1.22075 0.93311 0.93078 1.54041 0.92801 1.19057 0.87702 0.89697 0.84767 0.96113 1.86546 1.38880 1.96160 1.15589 1.22769 0.95884 0.91043 0.99049 1.65456 1.29567 1.00935 1.25296 1.23185 1.00143 0.96664 0.89526 1.22292 1.00244 0.93579 0.99542 1.22450 0.98254 0.96121 0.98540 1.22782 0.94484 0.91660 0.96578 0.94100 1.21507 0.97746 1.00954 0.93295 1.21033 0.94900 0.97808 0.94699 1.22144 0.94292 0.96123 1.04393 1.21529 0.97929 1.00003 0.96068 1.21546 0.99719 0.98242 0.96126 1.21475 0.95497 0.97287 1.00519 1.21637 0.97319 1.00924 0.95384 0.93097 0.80853 0.92276 0.95937 0.95056 0.90901 0.91368 0.90276 0.89645 0.90031 0.89932 0.94146 0.90255 0.96737 0.87293 0.91821 0.94875 0.91771 0.93793 0.91306 0.91358 0.90797 0.93775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.46 12.84 21.44 0.28 -54.19 16 2 C 0.03 1.60 5.40 84.65 0.46 2.06 16 3 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.59 -32.78 8.76 25.60 0.22 -32.55 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.25 12.70 3.10 29.85 0.09 12.79 16 10 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 11 O -0.57 -29.24 10.06 -148.98 -1.50 -30.74 16 12 C 0.04 1.71 4.57 86.30 0.39 2.10 16 13 N -0.49 -16.82 1.31 -856.72 -1.12 -17.94 16 14 C 0.03 1.05 5.36 86.45 0.46 1.51 16 15 C -0.12 -2.84 7.00 31.49 0.22 -2.62 16 16 C -0.12 -2.52 6.36 31.49 0.20 -2.32 16 17 C 0.05 1.45 2.58 45.06 0.12 1.57 16 18 H 0.04 1.14 8.00 -2.38 -0.02 1.12 16 19 C -0.10 -2.50 4.76 30.59 0.15 -2.35 16 20 C -0.07 -1.69 1.99 -10.79 -0.02 -1.71 16 21 C -0.13 -4.40 4.67 30.60 0.14 -4.25 16 22 C -0.12 -3.55 5.92 30.60 0.18 -3.37 16 23 C -0.12 -3.01 5.92 30.60 0.18 -2.83 16 24 C -0.11 -2.30 5.93 30.61 0.18 -2.12 16 25 C -0.12 -2.57 5.20 30.61 0.16 -2.41 16 26 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 27 H 0.35 16.11 8.97 -74.06 -0.66 15.44 16 28 H 0.06 2.49 7.12 -2.39 -0.02 2.48 16 29 H 0.02 0.92 7.72 -2.39 -0.02 0.90 16 30 H 0.03 1.00 7.72 -2.39 -0.02 0.98 16 31 H 0.07 2.74 6.63 -2.39 -0.02 2.72 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.74 5.34 -2.39 -0.01 1.73 16 35 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.04 1.22 7.24 -2.39 -0.02 1.20 16 38 H 0.08 1.86 5.58 -2.39 -0.01 1.84 16 39 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.11 4.19 4.87 -2.39 -0.01 4.18 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -63.14 351.82 3.07 -60.07 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.25 Total: 33.18 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 3.14 Total: -36.52 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -0.84 Total: -72.13 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.50 Total: -30.74 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -63.14 3.07 -60.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809573568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.084 kcal (2) G-P(sol) polarization free energy of solvation -63.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds