Wall clock time and date at job start Tue Mar 31 2020 05:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00109 * 2 1 4 4 H 1.48501 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47201 * 300.00028 * 3 2 1 6 6 H 1.48493 * 109.46911 * 60.00124 * 3 2 1 7 7 C 1.37878 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99748 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47687 * 300.00344 * 9 7 2 11 11 O 1.42899 * 109.47273 * 60.00285 * 9 7 2 12 12 C 1.53000 * 109.47166 * 180.02562 * 9 7 2 13 13 N 1.46903 * 109.47406 * 180.02562 * 12 9 7 14 14 C 1.48555 * 110.99783 * 279.68140 * 13 12 9 15 15 C 1.54385 * 104.59359 * 200.95540 * 14 13 12 16 16 C 1.54262 * 105.05601 * 23.85303 * 15 14 13 17 17 C 1.48558 * 111.00126 * 164.25985 * 13 12 9 18 18 H 1.08999 * 110.41007 * 40.26152 * 17 13 12 19 19 C 1.53003 * 110.41033 * 277.81880 * 17 13 12 20 20 C 1.53001 * 109.46761 * 181.18206 * 19 17 13 21 21 C 1.53001 * 109.47461 * 294.43930 * 20 19 17 22 22 C 1.52992 * 109.47077 * 180.02562 * 21 20 19 23 23 C 1.53003 * 109.47309 * 60.00450 * 22 21 20 24 24 C 1.53001 * 109.46684 * 299.99791 * 23 22 21 25 25 C 1.52992 * 109.47077 * 60.00067 * 24 23 22 26 26 H 0.96994 * 119.99757 * 359.97438 * 1 2 3 27 27 H 0.96706 * 113.99981 * 59.99470 * 11 9 7 28 28 H 1.09001 * 109.47405 * 59.99852 * 12 9 7 29 29 H 1.08995 * 109.47006 * 300.00186 * 12 9 7 30 30 H 1.08996 * 110.41564 * 82.17980 * 14 13 12 31 31 H 1.08998 * 110.51547 * 319.78113 * 14 13 12 32 32 H 1.08997 * 110.32531 * 264.95953 * 15 14 13 33 33 H 1.08997 * 110.32026 * 142.74566 * 15 14 13 34 34 H 1.08997 * 110.32569 * 241.09771 * 16 15 14 35 35 H 1.09011 * 110.40792 * 118.94085 * 16 15 14 36 36 H 1.08995 * 109.47068 * 301.18102 * 19 17 13 37 37 H 1.09005 * 109.47013 * 61.18804 * 19 17 13 38 38 H 1.08994 * 109.47348 * 54.44540 * 20 19 17 39 39 H 1.09004 * 109.47007 * 300.00204 * 21 20 19 40 40 H 1.09005 * 109.46879 * 60.00158 * 21 20 19 41 41 H 1.08994 * 109.47285 * 299.99842 * 22 21 20 42 42 H 1.09009 * 109.47086 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.46739 * 179.97438 * 23 22 21 44 44 H 1.08994 * 109.46951 * 59.99682 * 23 22 21 45 45 H 1.09004 * 109.47007 * 300.00066 * 24 23 22 46 46 H 1.09005 * 109.46879 * 180.02562 * 24 23 22 47 47 H 1.09009 * 109.47086 * 179.97438 * 25 24 23 48 48 H 1.08994 * 109.47285 * 60.00158 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 7 1.5108 -4.9343 -0.0012 14 6 1.0422 -5.2791 1.3657 15 6 0.7973 -6.8027 1.3202 16 6 1.6912 -7.3181 0.1734 17 6 2.4008 -6.0627 -0.3774 18 1 3.3802 -5.9453 0.0864 19 6 2.5365 -6.1508 -1.8989 20 6 3.4325 -7.3363 -2.2631 21 6 4.8527 -7.0769 -1.7565 22 6 5.7488 -8.2621 -2.1213 23 6 5.7731 -8.4343 -3.6414 24 6 4.3529 -8.6937 -4.1480 25 6 3.4568 -7.5085 -3.7832 26 1 -0.4849 0.8400 0.0004 27 1 0.9210 -2.5290 -1.9984 28 1 2.8720 -3.6044 0.8894 29 1 2.8719 -3.6043 -0.8905 30 1 0.1160 -4.7520 1.5944 31 1 1.8075 -5.0390 2.1038 32 1 -0.2508 -7.0115 1.1063 33 1 1.0907 -7.2616 2.2644 34 1 1.0817 -7.7800 -0.6033 35 1 2.4233 -8.0310 0.5531 36 1 1.5514 -6.2897 -2.3440 37 1 2.9802 -5.2302 -2.2780 38 1 3.0417 -8.2427 -1.8007 39 1 5.2435 -6.1705 -2.2190 40 1 4.8354 -6.9538 -0.6736 41 1 5.3582 -9.1686 -1.6591 42 1 6.7605 -8.0774 -1.7600 43 1 6.4119 -9.2784 -3.9012 44 1 6.1637 -7.5277 -4.1035 45 1 3.9622 -9.6003 -3.6857 46 1 4.3702 -8.8168 -5.2309 47 1 2.4451 -7.6932 -4.1445 48 1 3.8474 -6.6020 -4.2453 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809573569.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:56 Heat of formation + Delta-G solvation = -85.735387 kcal Electronic energy + Delta-G solvation = -23362.568308 eV Core-core repulsion = 20222.442338 eV Total energy + Delta-G solvation = -3140.125970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.47143 -38.03906 -35.44998 -33.05060 -32.04781 -31.49166 -30.83352 -28.80261 -27.58193 -25.10524 -24.25307 -22.71974 -21.58448 -21.28595 -20.02683 -19.71013 -19.11816 -16.92513 -15.68343 -15.45215 -14.97269 -14.59901 -14.48917 -14.34315 -14.11151 -13.97954 -13.86616 -13.26460 -13.02396 -12.70920 -12.50295 -12.29189 -12.18282 -11.76249 -11.58937 -11.31200 -11.17147 -11.09896 -10.99477 -10.91719 -10.88504 -10.68876 -10.54357 -10.39213 -10.26143 -10.20008 -10.00993 -9.93005 -9.88328 -8.94704 -8.52917 -8.06403 -7.64731 -5.95832 -4.14125 3.28623 3.36775 3.39944 4.33578 4.46692 4.63575 4.68232 4.77534 4.93548 5.03258 5.15604 5.19429 5.25637 5.31837 5.38488 5.43984 5.46160 5.46982 5.55991 5.61537 5.72517 5.80404 5.89811 5.92519 5.97795 5.98431 6.05023 6.08899 6.09502 6.12250 6.16225 6.24636 6.25552 6.32222 6.38178 6.39126 6.51718 6.54769 6.60308 6.70731 6.90019 7.45528 7.69732 7.82375 7.94775 8.26456 8.90500 9.52136 9.69357 11.08234 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018461 B = 0.004142 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.328571 B = 6757.984446 C = 7587.931992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.573 4.573 8 H 0.053 0.947 9 C 0.242 3.758 10 H 0.051 0.949 11 O -0.552 6.552 12 C 0.021 3.979 13 N -0.492 5.492 14 C 0.035 3.965 15 C -0.124 4.124 16 C -0.116 4.116 17 C 0.059 3.941 18 H 0.044 0.956 19 C -0.097 4.097 20 C -0.084 4.084 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.114 4.114 26 H 0.259 0.741 27 H 0.340 0.660 28 H 0.027 0.973 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.329 -18.110 -3.807 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.612 4.612 8 H 0.072 0.928 9 C 0.183 3.817 10 H 0.069 0.931 11 O -0.354 6.354 12 C -0.107 4.107 13 N -0.216 5.216 14 C -0.093 4.093 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.049 4.049 18 H 0.062 0.938 19 C -0.134 4.134 20 C -0.103 4.103 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.152 4.152 26 H 0.069 0.931 27 H 0.183 0.817 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.235 -17.966 -3.711 19.720 hybrid contribution 1.753 1.059 0.318 2.073 sum 8.988 -16.907 -3.392 19.446 Atomic orbital electron populations 1.70100 1.05885 1.26173 1.47237 1.25019 0.94654 0.98994 0.93931 0.86655 0.80211 0.84048 0.77678 1.19788 1.20867 1.20927 1.21721 0.93115 0.91758 1.54610 0.92826 1.19216 0.87728 0.88310 0.86402 0.93123 1.86570 1.37629 1.96304 1.14865 1.23250 0.97269 0.90734 0.99430 1.65407 1.33269 1.01299 1.21585 1.23075 1.00741 0.94849 0.90652 1.22293 1.00302 0.95733 0.97895 1.22314 0.98259 0.96889 0.97933 1.22669 0.94837 0.91643 0.95775 0.93831 1.21509 0.99798 0.97543 0.94592 1.21160 0.95089 0.98754 0.95278 1.21640 0.94927 0.98005 1.00812 1.21531 0.99483 0.98763 0.95849 1.21534 0.96833 1.01293 0.96037 1.21526 0.95360 0.98531 1.00178 1.21581 0.99517 0.98256 0.95849 0.93115 0.81720 0.95437 0.92102 0.90094 0.94600 0.91350 0.92160 0.91306 0.92291 0.91127 0.91940 0.91318 0.92030 0.91981 0.92281 0.92420 0.92534 0.92097 0.92253 0.92368 0.92001 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.80 12.84 55.43 0.71 -25.09 16 2 C 0.08 2.27 5.40 -17.82 -0.10 2.18 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.57 -15.99 8.76 -34.44 -0.30 -16.29 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.24 6.26 2.95 -27.88 -0.08 6.18 16 10 H 0.05 1.46 7.79 -51.93 -0.40 1.05 16 11 O -0.55 -14.75 12.60 -35.23 -0.44 -15.19 16 12 C 0.02 0.45 4.42 -3.82 -0.02 0.43 16 13 N -0.49 -9.10 4.85 -222.15 -1.08 -10.18 16 14 C 0.04 0.60 6.12 -2.18 -0.01 0.59 16 15 C -0.12 -1.69 7.00 -25.34 -0.18 -1.86 16 16 C -0.12 -1.49 5.46 -25.35 -0.14 -1.62 16 17 C 0.06 0.88 2.08 -66.07 -0.14 0.74 16 18 H 0.04 0.66 6.45 -51.93 -0.33 0.33 16 19 C -0.10 -1.32 4.28 -26.73 -0.11 -1.43 16 20 C -0.08 -0.91 2.09 -90.62 -0.19 -1.10 16 21 C -0.12 -1.24 4.98 -26.73 -0.13 -1.38 16 22 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 23 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 24 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 25 C -0.11 -1.16 5.20 -26.73 -0.14 -1.30 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.34 8.20 9.04 45.56 0.41 8.61 16 28 H 0.03 0.58 7.64 -51.93 -0.40 0.19 16 29 H 0.06 1.26 7.08 -51.93 -0.37 0.89 16 30 H 0.08 1.51 8.02 -51.93 -0.42 1.09 16 31 H 0.04 0.61 7.68 -51.93 -0.40 0.21 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.86 7.80 -51.93 -0.41 0.45 16 35 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 37 H 0.06 0.94 7.28 -51.93 -0.38 0.56 16 38 H 0.07 0.74 7.18 -51.93 -0.37 0.36 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.70 6.58 -51.93 -0.34 0.35 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 362.06 15.07 5.46 5.46 Total: -1.00 -30.18 362.06 -10.83 -41.01 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -8.44 Total: 6.13 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -2.01 Total: -18.50 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.37 Total: -35.27 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.44 Total: -15.19 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.18 -10.83 -41.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809573569.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.727 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds