Wall clock time and date at job start Tue Mar 31 2020 05:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00109 * 2 1 4 4 H 1.48501 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47201 * 300.00028 * 3 2 1 6 6 H 1.48493 * 109.46911 * 60.00124 * 3 2 1 7 7 C 1.37878 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99748 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47687 * 300.00344 * 9 7 2 11 11 O 1.42899 * 109.47273 * 60.00285 * 9 7 2 12 12 C 1.53000 * 109.47166 * 180.02562 * 9 7 2 13 13 N 1.46903 * 109.47406 * 180.02562 * 12 9 7 14 14 C 1.48555 * 110.99783 * 279.68140 * 13 12 9 15 15 C 1.54385 * 104.59359 * 200.95540 * 14 13 12 16 16 C 1.54262 * 105.05601 * 23.85303 * 15 14 13 17 17 C 1.48558 * 111.00126 * 164.25985 * 13 12 9 18 18 H 1.08999 * 110.41007 * 40.26152 * 17 13 12 19 19 C 1.53003 * 110.41033 * 277.81880 * 17 13 12 20 20 C 1.53001 * 109.46761 * 181.18206 * 19 17 13 21 21 C 1.53001 * 109.47461 * 294.43930 * 20 19 17 22 22 C 1.52992 * 109.47077 * 180.02562 * 21 20 19 23 23 C 1.53003 * 109.47309 * 60.00450 * 22 21 20 24 24 C 1.53001 * 109.46684 * 299.99791 * 23 22 21 25 25 C 1.52992 * 109.47077 * 60.00067 * 24 23 22 26 26 H 0.96994 * 119.99757 * 359.97438 * 1 2 3 27 27 H 0.96706 * 113.99981 * 59.99470 * 11 9 7 28 28 H 1.09001 * 109.47405 * 59.99852 * 12 9 7 29 29 H 1.08995 * 109.47006 * 300.00186 * 12 9 7 30 30 H 1.08996 * 110.41564 * 82.17980 * 14 13 12 31 31 H 1.08998 * 110.51547 * 319.78113 * 14 13 12 32 32 H 1.08997 * 110.32531 * 264.95953 * 15 14 13 33 33 H 1.08997 * 110.32026 * 142.74566 * 15 14 13 34 34 H 1.08997 * 110.32569 * 241.09771 * 16 15 14 35 35 H 1.09011 * 110.40792 * 118.94085 * 16 15 14 36 36 H 1.08995 * 109.47068 * 301.18102 * 19 17 13 37 37 H 1.09005 * 109.47013 * 61.18804 * 19 17 13 38 38 H 1.08994 * 109.47348 * 54.44540 * 20 19 17 39 39 H 1.09004 * 109.47007 * 300.00204 * 21 20 19 40 40 H 1.09005 * 109.46879 * 60.00158 * 21 20 19 41 41 H 1.08994 * 109.47285 * 299.99842 * 22 21 20 42 42 H 1.09009 * 109.47086 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.46739 * 179.97438 * 23 22 21 44 44 H 1.08994 * 109.46951 * 59.99682 * 23 22 21 45 45 H 1.09004 * 109.47007 * 300.00066 * 24 23 22 46 46 H 1.09005 * 109.46879 * 180.02562 * 24 23 22 47 47 H 1.09009 * 109.47086 * 179.97438 * 25 24 23 48 48 H 1.08994 * 109.47285 * 60.00158 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 7 1.5108 -4.9343 -0.0012 14 6 1.0422 -5.2791 1.3657 15 6 0.7973 -6.8027 1.3202 16 6 1.6912 -7.3181 0.1734 17 6 2.4008 -6.0627 -0.3774 18 1 3.3802 -5.9453 0.0864 19 6 2.5365 -6.1508 -1.8989 20 6 3.4325 -7.3363 -2.2631 21 6 4.8527 -7.0769 -1.7565 22 6 5.7488 -8.2621 -2.1213 23 6 5.7731 -8.4343 -3.6414 24 6 4.3529 -8.6937 -4.1480 25 6 3.4568 -7.5085 -3.7832 26 1 -0.4849 0.8400 0.0004 27 1 0.9210 -2.5290 -1.9984 28 1 2.8720 -3.6044 0.8894 29 1 2.8719 -3.6043 -0.8905 30 1 0.1160 -4.7520 1.5944 31 1 1.8075 -5.0390 2.1038 32 1 -0.2508 -7.0115 1.1063 33 1 1.0907 -7.2616 2.2644 34 1 1.0817 -7.7800 -0.6033 35 1 2.4233 -8.0310 0.5531 36 1 1.5514 -6.2897 -2.3440 37 1 2.9802 -5.2302 -2.2780 38 1 3.0417 -8.2427 -1.8007 39 1 5.2435 -6.1705 -2.2190 40 1 4.8354 -6.9538 -0.6736 41 1 5.3582 -9.1686 -1.6591 42 1 6.7605 -8.0774 -1.7600 43 1 6.4119 -9.2784 -3.9012 44 1 6.1637 -7.5277 -4.1035 45 1 3.9622 -9.6003 -3.6857 46 1 4.3702 -8.8168 -5.2309 47 1 2.4451 -7.6932 -4.1445 48 1 3.8474 -6.6020 -4.2453 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809573569.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:55 Heat of formation + Delta-G solvation = -104.645942 kcal Electronic energy + Delta-G solvation = -23363.388331 eV Core-core repulsion = 20222.442338 eV Total energy + Delta-G solvation = -3140.945993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.61182 -39.10391 -37.40947 -34.24705 -34.05428 -32.98902 -31.59661 -29.91827 -29.42145 -26.47597 -25.86229 -23.53453 -22.94508 -22.50104 -21.40422 -20.81778 -20.15329 -19.01067 -16.97175 -16.68637 -16.43094 -16.33093 -15.99410 -15.69512 -15.41999 -15.02903 -14.91311 -14.75936 -14.30731 -13.89785 -13.79287 -13.62145 -13.25330 -13.10929 -12.96412 -12.87034 -12.70644 -12.46379 -12.25937 -12.10355 -12.02199 -11.95103 -11.92969 -11.87027 -11.40995 -11.37037 -11.20664 -11.06223 -10.81597 -10.74780 -10.71073 -10.08677 -9.19723 -8.13879 -6.40626 1.38275 1.39086 1.51595 2.37359 3.09707 3.13498 3.69132 3.79882 3.87939 3.92113 3.96111 4.14020 4.27051 4.28383 4.35511 4.39732 4.43957 4.56304 4.60354 4.64261 4.65014 4.67634 4.70706 4.74439 4.83481 4.88803 4.90784 5.02489 5.04902 5.12180 5.14650 5.22049 5.23790 5.28258 5.31814 5.33815 5.42237 5.43801 5.46651 5.57088 5.58980 5.69024 5.74350 6.01864 6.17188 6.26430 6.73606 7.33817 7.61659 8.90854 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018461 B = 0.004142 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.328571 B = 6757.984446 C = 7587.931992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.589 4.589 8 H 0.057 0.943 9 C 0.243 3.757 10 H 0.012 0.988 11 O -0.568 6.568 12 C 0.043 3.957 13 N -0.511 5.511 14 C 0.029 3.971 15 C -0.116 4.116 16 C -0.108 4.108 17 C 0.059 3.941 18 H 0.044 0.956 19 C -0.090 4.090 20 C -0.074 4.074 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.115 4.115 26 H 0.261 0.739 27 H 0.350 0.650 28 H 0.023 0.977 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.929 -19.801 -4.079 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.627 4.627 8 H 0.075 0.925 9 C 0.185 3.815 10 H 0.030 0.970 11 O -0.371 6.371 12 C -0.086 4.086 13 N -0.234 5.234 14 C -0.099 4.099 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.048 4.048 18 H 0.062 0.938 19 C -0.128 4.128 20 C -0.093 4.093 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.152 4.152 26 H 0.070 0.930 27 H 0.194 0.806 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.850 -19.674 -3.986 21.938 hybrid contribution 1.214 1.578 0.403 2.031 sum 10.064 -18.096 -3.584 21.014 Atomic orbital electron populations 1.70241 1.07717 1.27280 1.48443 1.25909 0.95473 1.02926 0.93318 0.85497 0.79087 0.79089 0.77812 1.18752 1.20313 1.20377 1.22090 0.93428 0.92927 1.54297 0.92484 1.19052 0.87644 0.90015 0.84789 0.96982 1.86508 1.38532 1.96470 1.15574 1.22786 0.95768 0.90775 0.99260 1.65313 1.34105 1.01366 1.22650 1.23106 0.99389 0.97489 0.89958 1.22271 1.00794 0.92721 0.99599 1.22314 0.98544 0.96079 0.97695 1.22766 0.94389 0.91162 0.96529 0.93798 1.21456 0.99692 0.98010 0.93661 1.21079 0.94603 0.97636 0.95977 1.21618 0.95044 0.98353 1.00309 1.21513 0.99346 0.98172 0.96277 1.21544 0.96979 1.01583 0.95602 1.21509 0.95015 0.97931 1.00808 1.21575 0.99944 0.98630 0.95097 0.92984 0.80640 0.95846 0.91849 0.92812 0.94672 0.91157 0.89650 0.90610 0.89622 0.92227 0.93972 0.90188 0.93370 0.92475 0.91388 0.91935 0.91141 0.92772 0.91444 0.91594 0.91996 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.35 12.84 21.45 0.28 -55.08 16 2 C 0.03 1.50 5.40 84.65 0.46 1.95 16 3 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.59 -33.49 8.76 25.60 0.22 -33.26 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.24 13.08 2.95 29.85 0.09 13.17 16 10 H 0.01 0.75 7.79 -2.39 -0.02 0.73 16 11 O -0.57 -31.41 12.60 -148.98 -1.88 -33.29 16 12 C 0.04 1.85 4.42 86.30 0.38 2.24 16 13 N -0.51 -19.15 4.85 -856.74 -4.15 -23.31 16 14 C 0.03 1.00 6.12 86.45 0.53 1.53 16 15 C -0.12 -2.94 7.00 31.49 0.22 -2.72 16 16 C -0.11 -2.50 5.46 31.49 0.17 -2.33 16 17 C 0.06 1.71 2.08 45.06 0.09 1.80 16 18 H 0.04 1.28 6.45 -2.39 -0.02 1.26 16 19 C -0.09 -2.41 4.28 30.60 0.13 -2.28 16 20 C -0.07 -1.50 2.09 -10.79 -0.02 -1.52 16 21 C -0.12 -2.30 4.98 30.59 0.15 -2.14 16 22 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16 23 C -0.12 -1.79 5.92 30.60 0.18 -1.60 16 24 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 25 C -0.11 -2.16 5.20 30.59 0.16 -2.00 16 26 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 27 H 0.35 17.40 9.04 -74.05 -0.67 16.73 16 28 H 0.02 1.02 7.64 -2.39 -0.02 1.00 16 29 H 0.06 2.67 7.08 -2.39 -0.02 2.66 16 30 H 0.05 2.11 8.02 -2.39 -0.02 2.09 16 31 H 0.04 1.20 7.68 -2.39 -0.02 1.18 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 1.67 7.80 -2.39 -0.02 1.66 16 35 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.06 1.72 8.11 -2.39 -0.02 1.70 16 37 H 0.04 1.28 7.28 -2.38 -0.02 1.26 16 38 H 0.08 1.47 7.18 -2.39 -0.02 1.46 16 39 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.06 1.18 6.58 -2.38 -0.02 1.17 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 48 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -65.87 362.06 -0.37 -66.24 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.23 Total: 29.56 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 3.13 Total: -30.38 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -3.88 Total: -78.38 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -1.88 Total: -33.29 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -65.87 -0.37 -66.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809573569.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.404 kcal (2) G-P(sol) polarization free energy of solvation -65.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds