Wall clock time and date at job start Tue Mar 31 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47176 * 2 1 4 4 C 1.52999 * 109.47176 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47054 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47184 * 179.97438 * 5 4 3 7 7 C 1.52992 * 109.47446 * 185.12208 * 6 5 4 8 8 H 1.09004 * 109.46962 * 56.48978 * 7 6 5 9 9 C 1.53001 * 109.47493 * 296.49387 * 7 6 5 10 10 C 1.53007 * 109.46699 * 301.10159 * 9 7 6 11 11 C 1.50703 * 109.47434 * 176.48919 * 7 6 5 12 12 O 1.21291 * 119.99940 * 26.33843 * 11 7 6 13 13 N 1.34776 * 119.99966 * 206.34427 * 11 7 6 14 14 C 1.37101 * 119.99811 * 175.55714 * 13 11 7 15 15 H 1.07997 * 119.99627 * 56.62040 * 14 13 11 16 16 C 1.38950 * 119.99979 * 236.61866 * 14 13 11 17 17 N 1.31410 * 119.99702 * 193.15659 * 16 14 13 18 18 Si 1.86803 * 119.99883 * 13.15585 * 16 14 13 19 19 H 1.48497 * 109.47066 * 265.88706 * 18 16 14 20 20 H 1.48494 * 109.47183 * 25.88764 * 18 16 14 21 21 H 1.48491 * 109.46940 * 145.88994 * 18 16 14 22 22 C 1.46503 * 120.00241 * 355.55589 * 13 11 7 23 23 C 1.53004 * 117.49583 * 247.83136 * 22 13 11 24 24 C 1.52991 * 117.49824 * 179.17289 * 22 13 11 25 25 H 1.09000 * 109.47135 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47531 * 300.00309 * 1 2 3 27 27 H 1.09006 * 109.46915 * 60.00370 * 1 2 3 28 28 H 1.09001 * 109.47092 * 239.99473 * 2 1 3 29 29 H 1.09006 * 109.46915 * 119.99630 * 2 1 3 30 30 H 1.08998 * 109.47143 * 59.99453 * 3 2 1 31 31 H 1.09006 * 109.46896 * 299.99641 * 3 2 1 32 32 H 1.09001 * 109.47092 * 59.99473 * 4 3 2 33 33 H 1.09006 * 109.46915 * 299.99630 * 4 3 2 34 34 H 1.09001 * 109.47183 * 60.00041 * 5 4 3 35 35 H 1.08993 * 109.47200 * 299.99693 * 5 4 3 36 36 H 1.09001 * 109.46697 * 65.12550 * 6 5 4 37 37 H 1.08993 * 109.47227 * 305.13025 * 6 5 4 38 38 H 1.09000 * 109.47321 * 61.09852 * 9 7 6 39 39 H 1.08993 * 109.47482 * 181.10834 * 9 7 6 40 40 H 1.08993 * 109.47153 * 186.61138 * 10 9 7 41 41 H 1.09002 * 109.47202 * 306.61031 * 10 9 7 42 42 H 1.09006 * 109.46849 * 66.60960 * 10 9 7 43 43 H 0.97001 * 119.99448 * 180.02562 * 17 16 14 44 44 H 1.08995 * 115.54755 * 33.49972 * 22 13 11 45 45 H 1.09001 * 117.49984 * 0.02562 * 23 22 13 46 46 H 1.09009 * 117.49226 * 145.01850 * 23 22 13 47 47 H 1.09004 * 117.49662 * 214.97964 * 24 22 13 48 48 H 1.09004 * 117.50207 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 0.0013 7 6 6.1199 4.3217 0.1294 8 1 5.7053 4.7755 1.0297 9 6 5.6843 5.1287 -1.0953 10 6 6.2434 4.4761 -2.3612 11 6 7.6244 4.3150 0.2174 12 8 8.2566 3.4048 -0.2755 13 7 8.2673 5.3202 0.8440 14 6 9.6279 5.2692 1.0041 15 1 10.2693 5.1608 0.1420 16 6 10.1817 5.3572 2.2754 17 7 11.4709 5.5684 2.4173 18 14 9.0934 5.1752 3.7828 19 1 8.6590 6.5179 4.2447 20 1 7.9008 4.3609 3.4369 21 1 9.8555 4.5021 4.8650 22 6 7.5122 6.4674 1.3540 23 6 7.7341 7.8189 0.6717 24 6 8.2970 7.5666 2.0727 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9337 0.9284 -0.8891 33 1 3.9329 0.9288 0.8909 34 1 3.7163 3.3993 0.8895 35 1 3.7171 3.3982 -0.8904 36 1 5.9741 2.4520 -0.9304 37 1 5.9726 2.2943 0.8424 38 1 4.5958 5.1502 -1.1480 39 1 6.0643 6.1470 -1.0134 40 1 6.0337 5.1124 -3.2210 41 1 7.3210 4.3479 -2.2584 42 1 5.7739 3.5031 -2.5061 43 1 11.8575 5.6294 3.3049 44 1 6.5088 6.2458 1.7173 45 1 8.4416 7.8543 -0.1567 46 1 6.8766 8.4865 0.5867 47 1 7.8097 8.0684 2.9087 48 1 9.3751 7.4361 2.1665 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812946200.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:15 Heat of formation + Delta-G solvation = -40.219430 kcal Electronic energy + Delta-G solvation = -23221.838463 eV Core-core repulsion = 20083.686214 eV Total energy + Delta-G solvation = -3138.152250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.46406 -37.19214 -36.32494 -34.96766 -32.82566 -32.33050 -31.51044 -29.19922 -27.02322 -24.86909 -23.49677 -22.19613 -21.96066 -21.34801 -21.07234 -20.13314 -18.01118 -16.99460 -16.42580 -16.01091 -15.19193 -15.11057 -14.59786 -14.34183 -14.07727 -13.75713 -13.44679 -13.29792 -13.08427 -12.86999 -12.47809 -12.24586 -12.18064 -11.97124 -11.61381 -11.53624 -11.40558 -11.08776 -11.05603 -10.98842 -10.88789 -10.69321 -10.67072 -10.50125 -10.46770 -10.16655 -10.08855 -9.97687 -9.86179 -9.53542 -8.83396 -8.33597 -7.34298 -6.30679 -4.11854 3.17112 3.28588 3.35495 3.75248 4.24194 4.35903 4.54842 4.64098 4.77116 4.92568 5.00115 5.07407 5.17938 5.26282 5.32835 5.40028 5.42095 5.52231 5.53311 5.60695 5.65522 5.70440 5.74651 5.79192 5.84584 5.85878 5.87815 6.00338 6.03318 6.06149 6.09781 6.18989 6.21982 6.24678 6.26162 6.34310 6.43165 6.48418 6.62413 6.66508 6.75636 6.82272 7.02774 7.69196 8.42093 8.62092 9.03746 9.33793 9.86121 10.78823 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020963 B = 0.004130 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.379769 B = 6778.604985 C = 7139.377317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.118 4.118 6 C -0.102 4.102 7 C -0.110 4.110 8 H 0.078 0.922 9 C -0.108 4.108 10 C -0.155 4.155 11 C 0.495 3.505 12 O -0.552 6.552 13 N -0.451 5.451 14 C -0.319 4.319 15 H 0.093 0.907 16 C 0.073 3.927 17 N -0.874 5.874 18 Si 0.878 3.122 19 H -0.264 1.264 20 H -0.267 1.267 21 H -0.291 1.291 22 C 0.055 3.945 23 C -0.189 4.189 24 C -0.186 4.186 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.272 0.728 44 H 0.107 0.893 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.895 -2.061 -2.900 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.158 4.158 5 C -0.156 4.156 6 C -0.139 4.139 7 C -0.132 4.132 8 H 0.096 0.904 9 C -0.146 4.146 10 C -0.212 4.212 11 C 0.284 3.716 12 O -0.432 6.432 13 N -0.172 5.172 14 C -0.446 4.446 15 H 0.111 0.889 16 C -0.133 4.133 17 N -0.510 5.510 18 Si 0.705 3.295 19 H -0.189 1.189 20 H -0.192 1.192 21 H -0.218 1.218 22 C -0.051 4.051 23 C -0.228 4.228 24 C -0.223 4.223 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.125 0.875 45 H 0.114 0.886 46 H 0.103 0.897 47 H 0.103 0.897 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.370 -2.516 -3.027 18.787 hybrid contribution -0.404 0.077 1.051 1.129 sum -18.775 -2.439 -1.976 19.035 Atomic orbital electron populations 1.21783 0.96169 1.01361 1.01690 1.21554 0.95567 0.97304 1.01990 1.21630 0.95857 0.96379 1.01841 1.21613 0.94748 0.97314 1.02142 1.21647 0.95877 0.96309 1.01751 1.21427 0.93933 0.95271 1.03309 1.21416 0.94859 0.97536 0.99346 0.90425 1.21412 1.00035 0.99183 0.94000 1.21845 1.02851 1.00014 0.96468 1.20388 0.88367 0.81970 0.80919 1.90549 1.68621 1.36081 1.47909 1.43157 1.06759 1.14539 1.52783 1.18776 0.79146 1.52408 0.94270 0.88924 1.25571 0.95340 0.94038 0.98332 1.69725 1.11435 1.45776 1.24092 0.86837 0.81252 0.79011 0.82428 1.18949 1.19169 1.21814 1.21925 0.96009 0.84037 1.03096 1.23258 1.02904 0.99578 0.97033 1.23492 1.03068 1.01388 0.94366 0.92994 0.92860 0.92849 0.92105 0.92122 0.92201 0.92167 0.92022 0.92097 0.92378 0.91873 0.90637 0.92118 0.91839 0.91555 0.93567 0.91421 0.92737 0.91743 0.87538 0.88586 0.89742 0.89657 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.77 16 2 C -0.13 -1.07 5.93 -26.73 -0.16 -1.23 16 3 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 4 C -0.12 -1.31 5.21 -26.73 -0.14 -1.45 16 5 C -0.12 -1.42 4.80 -26.73 -0.13 -1.55 16 6 C -0.10 -1.61 3.91 -26.73 -0.10 -1.71 16 7 C -0.11 -1.90 1.83 -91.77 -0.17 -2.07 16 8 H 0.08 1.26 6.30 -51.93 -0.33 0.94 16 9 C -0.11 -1.60 5.37 -26.73 -0.14 -1.75 16 10 C -0.15 -2.38 9.18 37.16 0.34 -2.04 16 11 C 0.50 11.47 5.81 -10.98 -0.06 11.40 16 12 O -0.55 -14.80 15.27 5.55 0.08 -14.72 16 13 N -0.45 -10.86 2.13 -107.73 -0.23 -11.09 16 14 C -0.32 -9.00 8.48 -14.93 -0.13 -9.13 16 15 H 0.09 2.96 8.06 -52.49 -0.42 2.53 16 16 C 0.07 2.03 3.85 -17.47 -0.07 1.97 16 17 N -0.87 -25.45 13.96 55.50 0.77 -24.67 16 18 Si 0.88 21.18 24.81 -169.99 -4.22 16.97 16 19 H -0.26 -5.80 6.07 56.52 0.34 -5.46 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 C 0.05 1.08 3.90 -67.93 -0.26 0.82 16 23 C -0.19 -3.32 10.39 -26.69 -0.28 -3.60 16 24 C -0.19 -3.66 6.79 -26.70 -0.18 -3.84 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.71 6.81 -51.93 -0.35 0.35 16 36 H 0.08 1.26 6.21 -51.93 -0.32 0.94 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.77 6.69 -51.93 -0.35 0.43 16 39 H 0.07 1.00 7.69 -51.93 -0.40 0.60 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.29 6.44 -51.93 -0.33 0.95 16 42 H 0.05 0.78 6.71 -51.93 -0.35 0.43 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.11 1.85 6.37 -51.93 -0.33 1.52 16 45 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 46 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 47 H 0.09 1.47 7.94 -51.93 -0.41 1.06 16 48 H 0.12 2.87 5.34 -51.93 -0.28 2.60 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -30.74 363.89 -8.35 -39.08 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -8.99 Total: 5.14 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -1.25 Total: -16.18 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.54 Total: -35.77 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.08 Total: -14.72 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.22 Total: 16.97 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.74 -8.35 -39.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812946200.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.139 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds