Wall clock time and date at job start Tue Mar 31 2020 05:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99712 * 2 1 4 4 H 1.48500 * 109.47212 * 269.99923 * 3 2 1 5 5 H 1.48492 * 109.47144 * 30.00101 * 3 2 1 6 6 H 1.48501 * 109.47063 * 150.00075 * 3 2 1 7 7 C 1.37875 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00260 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00093 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46908 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46975 * 179.97438 * 10 9 7 12 12 N 1.46893 * 109.47268 * 179.97438 * 11 10 9 13 13 C 1.46901 * 111.00348 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.61561 * 35.22493 * 13 12 11 15 15 C 1.53186 * 109.54333 * 275.00169 * 13 12 11 16 16 C 1.53100 * 109.13446 * 183.10379 * 15 13 12 17 17 O 1.42894 * 109.42154 * 57.64595 * 16 15 13 18 18 C 1.42886 * 114.13335 * 298.87992 * 17 16 15 19 19 C 1.53004 * 109.49329 * 180.96509 * 18 17 16 20 20 C 1.52996 * 109.48997 * 60.16871 * 19 18 17 21 21 C 1.52999 * 109.47023 * 59.99136 * 20 19 18 22 22 C 1.52996 * 109.45149 * 299.96938 * 21 20 19 23 23 C 1.52978 * 109.52696 * 301.04433 * 18 17 16 24 24 C 1.53083 * 109.44632 * 61.04538 * 18 17 16 25 25 H 0.96988 * 120.00179 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47359 * 59.99750 * 9 7 2 27 27 H 1.09006 * 109.47231 * 299.99790 * 9 7 2 28 28 H 1.08999 * 109.47222 * 60.00158 * 10 9 7 29 29 H 1.08997 * 109.47434 * 299.99521 * 10 9 7 30 30 H 1.09004 * 109.46722 * 59.99719 * 11 10 9 31 31 H 1.08997 * 109.47400 * 300.00188 * 11 10 9 32 32 H 1.00899 * 111.00075 * 303.95610 * 12 11 10 33 33 H 1.08991 * 109.52953 * 303.00387 * 15 13 12 34 34 H 1.08998 * 109.52476 * 63.21032 * 15 13 12 35 35 H 1.09005 * 109.47645 * 177.62921 * 16 15 13 36 36 H 1.09001 * 109.48271 * 297.65712 * 16 15 13 37 37 H 1.08998 * 109.46167 * 180.16964 * 19 18 17 38 38 H 1.08997 * 109.47036 * 300.15828 * 19 18 17 39 39 H 1.09008 * 109.46763 * 299.99169 * 20 19 18 40 40 H 1.09000 * 109.47024 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.47728 * 179.97438 * 21 20 19 42 42 H 1.09003 * 109.46901 * 59.96164 * 21 20 19 43 43 H 1.08994 * 109.47065 * 300.01119 * 22 21 20 44 44 H 1.09001 * 109.46726 * 180.02562 * 22 21 20 45 45 H 1.08996 * 109.46626 * 59.84331 * 23 18 17 46 46 H 1.09003 * 109.46794 * 179.83518 * 23 18 17 47 47 H 1.09008 * 109.51677 * 182.57627 * 24 18 17 48 48 H 1.08994 * 109.52307 * 62.39916 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5517 -2.6364 -0.0001 12 7 6.0414 -4.0213 0.0004 13 6 7.5099 -4.0605 0.0009 14 1 7.8978 -3.2317 0.5931 15 6 8.0261 -3.9487 -1.4370 16 6 9.5524 -4.0683 -1.4330 17 8 9.9301 -5.3094 -0.8340 18 6 9.5145 -5.4524 0.5255 19 6 9.9925 -6.8014 1.0664 20 6 11.5193 -6.8682 0.9944 21 6 12.1194 -5.7399 1.8357 22 6 11.6421 -4.3911 1.2937 23 6 10.1153 -4.3237 1.3653 24 6 7.9869 -5.3865 0.6011 25 1 -0.4850 0.8399 0.0004 26 1 3.8746 -0.6807 0.8904 27 1 3.8753 -0.6795 -0.8895 28 1 3.6587 -3.1501 -0.8903 29 1 3.6581 -3.1505 0.8897 30 1 5.9150 -2.1225 0.8899 31 1 5.9150 -2.1225 -0.8900 32 1 5.6659 -4.5373 0.7819 33 1 7.5994 -4.7496 -2.0406 34 1 7.7374 -2.9837 -1.8537 35 1 9.9225 -4.0317 -2.4577 36 1 9.9802 -3.2441 -0.8622 37 1 9.6726 -6.9112 2.1026 38 1 9.5650 -7.6053 0.4671 39 1 11.8393 -6.7585 -0.0419 40 1 11.8595 -7.8292 1.3802 41 1 13.2071 -5.7876 1.7848 42 1 11.7988 -5.8492 2.8717 43 1 11.9624 -4.2820 0.2576 44 1 12.0699 -3.5871 1.8926 45 1 9.7756 -3.3629 0.9787 46 1 9.7953 -4.4320 2.4017 47 1 7.6707 -5.4495 1.6424 48 1 7.5583 -6.2159 0.0386 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885968886.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:14 Heat of formation + Delta-G solvation = -83.627907 kcal Electronic energy + Delta-G solvation = -22918.730521 eV Core-core repulsion = 19778.695939 eV Total energy + Delta-G solvation = -3140.034582 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.80009 -37.28278 -36.06699 -33.99523 -32.33062 -31.86889 -31.00218 -30.31473 -27.58015 -25.94795 -23.82408 -23.20414 -22.56955 -21.52335 -20.38459 -19.90363 -19.28550 -16.72425 -16.55570 -16.09716 -15.57637 -15.51199 -15.04511 -14.69932 -14.29623 -14.15087 -13.90043 -13.64484 -13.34996 -13.20030 -12.68603 -12.58305 -12.46974 -12.36273 -12.11566 -11.80347 -11.64961 -11.50963 -11.29609 -11.07224 -11.02010 -10.81826 -10.75831 -10.63770 -10.56191 -10.07980 -9.87386 -9.73579 -9.63791 -9.40655 -9.15915 -8.52706 -8.25776 -6.02947 -4.00676 3.30879 3.37962 3.41512 3.57316 4.12577 4.35888 4.45858 4.45985 4.53591 4.70317 4.79250 4.91195 4.95397 5.04268 5.14652 5.19172 5.24642 5.27796 5.30805 5.31576 5.41813 5.46631 5.52303 5.59922 5.68272 5.68956 5.73784 5.80047 5.86065 5.87532 5.91556 5.94571 6.03726 6.05296 6.16586 6.20062 6.27804 6.56001 6.58773 6.92450 7.13838 7.22694 7.35182 7.44599 7.57129 7.81557 8.56397 9.02647 9.59662 11.10690 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035032 B = 0.002874 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.077313 B = 9741.749547 C = 9894.983041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.057 3.943 12 N -0.685 5.685 13 C 0.086 3.914 14 H 0.043 0.957 15 C -0.143 4.143 16 C 0.059 3.941 17 O -0.368 6.368 18 C 0.126 3.874 19 C -0.103 4.103 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.148 4.148 24 C -0.144 4.144 25 H 0.263 0.737 26 H 0.013 0.987 27 H 0.011 0.989 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.022 0.978 31 H 0.066 0.934 32 H 0.339 0.661 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.133 -12.006 2.447 28.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.137 4.137 11 C -0.071 4.071 12 N -0.316 5.316 13 C -0.024 4.024 14 H 0.061 0.939 15 C -0.182 4.182 16 C -0.018 4.018 17 O -0.287 6.287 18 C 0.086 3.914 19 C -0.141 4.141 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.185 4.185 24 C -0.182 4.182 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.029 0.971 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 26.017 -12.095 1.676 28.739 hybrid contribution 0.211 1.556 1.033 1.879 sum 26.227 -10.539 2.708 28.395 Atomic orbital electron populations 1.69916 1.06290 1.26834 1.51347 1.25046 0.94739 0.99172 0.94654 0.86763 0.80289 0.83638 0.78486 1.20286 1.21425 1.19132 1.21155 0.89527 0.94463 1.50521 0.91022 1.19540 0.97165 0.92296 0.96044 1.21443 0.91080 0.99637 1.01567 1.22189 0.97621 0.87658 0.99661 1.60548 1.06037 1.15113 1.49918 1.21547 0.88847 0.96182 0.95853 0.93921 1.22212 0.95258 1.03387 0.97320 1.22600 0.94344 0.86687 0.98203 1.87924 1.78210 1.37386 1.25173 1.21362 0.92142 0.95406 0.82538 1.21521 0.96399 0.95364 1.00772 1.21464 0.94881 0.97977 1.01051 1.21529 0.99910 0.94903 0.99259 1.21447 0.95012 0.97130 1.01690 1.22189 0.96380 0.99303 1.00635 1.22377 0.95661 0.98738 1.01450 0.92774 0.96919 0.97098 0.91952 0.93046 0.95926 0.91583 0.84236 0.90315 0.91036 0.88947 0.93240 0.90816 0.91132 0.91068 0.92231 0.92182 0.92278 0.91447 0.92297 0.91276 0.91130 0.91219 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -15.08 9.66 -34.44 -0.33 -15.42 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -2.00 5.41 -26.73 -0.14 -2.14 16 11 C 0.06 0.94 5.49 -3.83 -0.02 0.92 16 12 N -0.69 -9.61 6.31 -106.53 -0.67 -10.29 16 13 C 0.09 1.01 2.27 -67.53 -0.15 0.86 16 14 H 0.04 0.52 6.29 -51.93 -0.33 0.19 16 15 C -0.14 -1.64 5.63 -26.58 -0.15 -1.79 16 16 C 0.06 0.58 6.52 37.21 0.24 0.82 16 17 O -0.37 -3.94 8.91 -35.23 -0.31 -4.26 16 18 C 0.13 1.18 0.68 -90.59 -0.06 1.12 16 19 C -0.10 -0.85 4.94 -26.73 -0.13 -0.98 16 20 C -0.12 -0.89 5.78 -26.73 -0.15 -1.04 16 21 C -0.12 -0.86 5.92 -26.73 -0.16 -1.01 16 22 C -0.12 -0.92 5.78 -26.73 -0.15 -1.08 16 23 C -0.15 -1.29 4.04 -26.74 -0.11 -1.40 16 24 C -0.14 -1.47 4.18 -26.60 -0.11 -1.58 16 25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 27 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 31 H 0.07 1.09 7.51 -51.93 -0.39 0.70 16 32 H 0.34 4.49 8.37 -39.29 -0.33 4.16 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.85 7.55 -51.93 -0.39 0.46 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.46 6.35 -51.93 -0.33 0.13 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.62 7.69 -51.92 -0.40 0.22 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.59 7.69 -51.93 -0.40 0.19 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.65 4.99 -51.93 -0.26 0.39 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 48 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -30.72 354.62 -10.28 -41.00 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -9.09 Total: -0.28 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -1.65 Total: -21.32 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.10 Total: -37.83 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.31 Total: -4.26 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.72 -10.28 -41.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885968886.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.631 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds