Wall clock time and date at job start Tue Mar 31 2020 05:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99650 * 2 1 4 4 H 1.48497 * 109.47319 * 269.99952 * 3 2 1 5 5 H 1.48498 * 109.47013 * 29.99994 * 3 2 1 6 6 H 1.48498 * 109.47026 * 149.99957 * 3 2 1 7 7 C 1.37876 * 120.00639 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99475 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00213 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47209 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00211 * 190.00235 * 10 9 7 12 12 C 1.52992 * 109.47196 * 76.12293 * 11 10 9 13 13 O 1.42899 * 109.47544 * 64.19034 * 12 11 10 14 14 C 1.42898 * 114.00742 * 175.25878 * 13 12 11 15 15 C 1.52997 * 109.47029 * 273.05154 * 14 13 12 16 16 C 1.53000 * 109.47485 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.46939 * 59.99468 * 16 15 14 18 18 C 1.52997 * 109.47467 * 300.00543 * 17 16 15 19 19 C 1.52994 * 109.47376 * 153.05126 * 14 13 12 20 20 C 1.46897 * 110.99921 * 66.04426 * 10 9 7 21 21 C 1.53002 * 109.47309 * 199.38363 * 20 10 9 22 22 C 1.53004 * 117.49432 * 243.02721 * 21 20 10 23 23 C 1.52998 * 117.50049 * 174.40628 * 21 20 10 24 24 H 0.97000 * 120.00948 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47201 * 59.99897 * 9 7 2 26 26 H 1.09000 * 109.47133 * 299.99973 * 9 7 2 27 27 H 1.09008 * 109.46748 * 196.12588 * 11 10 9 28 28 H 1.08997 * 109.46610 * 316.11821 * 11 10 9 29 29 H 1.08998 * 109.46926 * 184.18766 * 12 11 10 30 30 H 1.08996 * 109.47498 * 304.18618 * 12 11 10 31 31 H 1.09003 * 109.46836 * 33.04954 * 14 13 12 32 32 H 1.09003 * 109.47148 * 299.99609 * 15 14 13 33 33 H 1.09007 * 109.47162 * 59.99823 * 15 14 13 34 34 H 1.09003 * 109.46996 * 300.00177 * 16 15 14 35 35 H 1.08998 * 109.47707 * 180.02562 * 16 15 14 36 36 H 1.08996 * 109.47194 * 179.97438 * 17 16 15 37 37 H 1.09003 * 109.46697 * 60.00526 * 17 16 15 38 38 H 1.08993 * 109.47141 * 299.99568 * 18 17 16 39 39 H 1.09002 * 109.46742 * 179.97438 * 18 17 16 40 40 H 1.09001 * 109.47185 * 299.99575 * 19 14 13 41 41 H 1.08993 * 109.47169 * 60.00022 * 19 14 13 42 42 H 1.09002 * 109.47563 * 319.38287 * 20 10 9 43 43 H 1.09001 * 109.47505 * 79.38210 * 20 10 9 44 44 H 1.08993 * 115.55057 * 28.73105 * 21 20 10 45 45 H 1.08991 * 117.50321 * 359.97438 * 22 21 20 46 46 H 1.09001 * 117.50019 * 145.01976 * 22 21 20 47 47 H 1.09004 * 117.49895 * 214.97649 * 23 21 20 48 48 H 1.09000 * 117.49887 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0014 -2.5788 -0.0001 11 6 5.4501 -2.6249 0.2387 12 6 5.7306 -2.3771 1.7221 13 8 5.1694 -3.4386 2.4969 14 6 5.4673 -3.3602 3.8923 15 6 6.8044 -4.0509 4.1679 16 6 7.1237 -3.9664 5.6618 17 6 6.0175 -4.6597 6.4597 18 6 4.6804 -3.9691 6.1841 19 6 4.3611 -4.0540 4.6897 20 6 3.6524 -3.2605 -1.2536 21 6 3.7287 -4.7748 -1.0491 22 6 4.7612 -5.5476 -1.8723 23 6 3.2726 -5.6677 -2.2048 24 1 -0.4851 0.8400 0.0004 25 1 3.8745 -0.6806 0.8905 26 1 3.8752 -0.6794 -0.8894 27 1 5.8340 -3.6049 -0.0451 28 1 5.9411 -1.8558 -0.3575 29 1 6.8074 -2.3374 1.8865 30 1 5.2819 -1.4307 2.0237 31 1 5.5300 -2.3142 4.1922 32 1 6.7417 -5.0969 3.8680 33 1 7.5926 -3.5566 3.5998 34 1 7.1866 -2.9203 5.9614 35 1 8.0765 -4.4580 5.8582 36 1 6.2452 -4.6000 7.5240 37 1 5.9547 -5.7059 6.1602 38 1 4.7432 -2.9230 6.4837 39 1 3.8923 -4.4634 6.7523 40 1 3.4085 -3.5619 4.4934 41 1 4.2984 -5.0999 4.3898 42 1 2.6398 -2.9842 -1.5478 43 1 4.3516 -2.9638 -2.0355 44 1 3.5301 -5.1229 -0.0355 45 1 5.3857 -4.9774 -2.5599 46 1 5.2422 -6.4044 -1.4003 47 1 2.7741 -6.6034 -1.9514 48 1 2.9177 -5.1763 -3.1107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886030754.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:05 Heat of formation + Delta-G solvation = -39.589456 kcal Electronic energy + Delta-G solvation = -23102.756118 eV Core-core repulsion = 19964.631186 eV Total energy + Delta-G solvation = -3138.124932 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.04439 -37.86744 -36.37014 -35.17765 -32.42660 -30.79389 -30.23718 -28.59524 -27.85784 -24.73263 -22.69443 -22.31572 -22.07448 -21.82738 -20.33831 -19.79302 -19.48584 -16.88703 -16.55775 -15.63460 -15.41251 -14.89309 -14.57685 -14.49832 -14.09253 -13.96105 -13.86574 -13.43321 -13.09817 -12.70864 -12.50757 -12.35434 -12.20603 -11.99871 -11.83684 -11.55712 -11.19998 -11.13591 -11.07133 -10.88585 -10.77759 -10.66682 -10.51013 -10.39678 -10.26254 -10.10606 -9.79493 -9.68767 -9.43783 -9.12773 -8.99774 -8.53714 -7.27066 -6.01247 -3.97435 3.28699 3.36585 3.37929 3.98243 4.22401 4.44308 4.69554 4.71653 4.74141 4.92505 5.19466 5.22943 5.23966 5.30679 5.35785 5.37141 5.46564 5.48427 5.52090 5.57656 5.62316 5.68230 5.77026 5.84184 5.89987 5.94498 5.97086 5.99815 6.04305 6.14282 6.15655 6.19621 6.23838 6.30963 6.36171 6.41491 6.44455 6.44659 6.57577 6.83854 6.95382 7.02415 7.65055 7.71762 8.02738 8.14421 8.72235 9.09774 9.60935 11.12010 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.005363 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.483448 B = 5219.638930 C = 6747.286072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.872 3.128 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.504 4.504 8 H 0.083 0.917 9 C 0.160 3.840 10 N -0.513 5.513 11 C 0.054 3.946 12 C 0.072 3.928 13 O -0.357 6.357 14 C 0.089 3.911 15 C -0.141 4.141 16 C -0.117 4.117 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.114 4.114 20 C 0.091 3.909 21 C -0.127 4.127 22 C -0.193 4.193 23 C -0.184 4.184 24 H 0.262 0.738 25 H 0.028 0.972 26 H -0.020 1.020 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.018 0.982 44 H 0.112 0.888 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.243 -8.888 7.062 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.542 4.542 8 H 0.101 0.899 9 C 0.034 3.966 10 N -0.237 5.237 11 C -0.074 4.074 12 C -0.005 4.005 13 O -0.275 6.275 14 C 0.031 3.969 15 C -0.179 4.179 16 C -0.154 4.154 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.152 4.152 20 C -0.037 4.037 21 C -0.146 4.146 22 C -0.230 4.230 23 C -0.221 4.221 24 H 0.072 0.928 25 H 0.046 0.954 26 H -0.002 1.002 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.037 0.963 44 H 0.130 0.870 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.107 0.893 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.739 -9.145 7.367 18.074 hybrid contribution 1.028 1.645 -0.586 2.026 sum 14.767 -7.500 6.781 17.897 Atomic orbital electron populations 1.69890 1.06065 1.26675 1.51368 1.24888 0.94688 0.98669 0.95058 0.86911 0.80346 0.84347 0.78396 1.20415 1.21211 1.19343 1.21050 0.88720 0.94713 1.49709 0.89949 1.20230 0.97193 0.84449 0.94718 1.61804 1.09865 1.18287 1.33702 1.22090 0.91110 1.00722 0.93517 1.22524 0.95192 0.90690 0.92092 1.88055 1.74988 1.47790 1.16689 1.21993 0.93623 0.98306 0.82980 1.22068 0.97936 1.01967 0.95947 1.21490 0.98214 1.00755 0.94957 1.21565 0.95042 0.99835 0.99381 1.21519 0.97030 1.00867 0.96025 1.21537 0.98654 1.01635 0.93381 1.21606 1.01934 0.90273 0.89863 1.22421 1.01605 0.93971 0.96557 1.23004 0.92149 1.03316 1.04528 1.22890 0.96830 1.01818 1.00610 0.92762 0.95424 1.00208 0.90817 0.94600 0.94453 0.93220 0.92902 0.91306 0.92255 0.92133 0.92123 0.92236 0.91930 0.91998 0.91620 0.90712 0.91331 0.88733 0.96349 0.86967 0.89626 0.89608 0.89321 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.50 -14.35 8.79 -34.44 -0.30 -14.66 16 8 H 0.08 2.57 7.55 -52.48 -0.40 2.18 16 9 C 0.16 3.91 3.61 -4.98 -0.02 3.89 16 10 N -0.51 -10.86 4.29 -236.07 -1.01 -11.87 16 11 C 0.05 0.96 5.20 -3.83 -0.02 0.94 16 12 C 0.07 1.20 5.91 37.15 0.22 1.42 16 13 O -0.36 -6.18 9.93 -35.23 -0.35 -6.53 16 14 C 0.09 1.26 2.60 -26.74 -0.07 1.19 16 15 C -0.14 -1.63 5.48 -26.73 -0.15 -1.78 16 16 C -0.12 -1.12 5.92 -26.73 -0.16 -1.27 16 17 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 18 C -0.12 -1.23 5.93 -26.71 -0.16 -1.39 16 19 C -0.11 -1.52 5.58 -26.71 -0.15 -1.67 16 20 C 0.09 1.79 5.07 -3.82 -0.02 1.77 16 21 C -0.13 -2.14 5.14 -90.62 -0.47 -2.61 16 22 C -0.19 -2.69 10.11 -26.73 -0.27 -2.96 16 23 C -0.18 -2.66 10.25 -26.73 -0.27 -2.94 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.03 0.69 5.66 -51.93 -0.29 0.39 16 26 H -0.02 -0.48 7.55 -51.93 -0.39 -0.87 16 27 H 0.07 1.21 7.22 -51.92 -0.38 0.84 16 28 H 0.04 0.60 7.99 -51.93 -0.42 0.19 16 29 H 0.04 0.52 7.54 -51.93 -0.39 0.13 16 30 H 0.05 0.90 6.70 -51.93 -0.35 0.55 16 31 H 0.05 0.75 7.87 -51.93 -0.41 0.34 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.67 7.58 -51.92 -0.39 0.27 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.09 2.12 6.58 -51.93 -0.34 1.78 16 43 H 0.02 0.34 7.74 -51.93 -0.40 -0.06 16 44 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 45 H 0.09 1.14 8.03 -51.93 -0.42 0.73 16 46 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -30.23 369.55 -11.01 -41.24 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -9.24 Total: 1.06 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -2.09 Total: -19.47 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: -0.24 Total: -38.80 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.35 Total: -6.53 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.23 -11.01 -41.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886030754.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.654 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds