Wall clock time and date at job start Tue Mar 31 2020 05:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00280 * 2 1 4 4 H 1.48498 * 109.47188 * 274.91920 * 3 2 1 5 5 H 1.48503 * 109.46927 * 34.91804 * 3 2 1 6 6 H 1.48498 * 109.47157 * 154.91425 * 3 2 1 7 7 C 1.37875 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00157 * 5.05628 * 7 2 1 9 9 C 1.50699 * 120.00067 * 185.05227 * 7 2 1 10 10 N 1.46901 * 109.47206 * 175.17487 * 9 7 2 11 11 C 1.46842 * 111.00497 * 60.32468 * 10 9 7 12 12 C 1.53037 * 109.52660 * 174.16057 * 11 10 9 13 13 C 1.53201 * 109.29828 * 59.18006 * 12 11 10 14 14 C 1.53126 * 109.11861 * 302.37433 * 13 12 11 15 15 C 1.46843 * 110.99723 * 296.11376 * 10 9 7 16 16 H 1.09005 * 109.45532 * 65.83176 * 15 10 9 17 17 C 1.53001 * 109.46713 * 305.86192 * 15 10 9 18 18 C 1.53002 * 109.47587 * 173.90975 * 17 15 10 19 19 O 1.42899 * 109.47045 * 65.80442 * 18 17 15 20 20 C 1.53001 * 109.46655 * 305.80955 * 18 17 15 21 21 C 1.52998 * 109.47155 * 180.02562 * 20 18 17 22 22 C 1.53003 * 109.47051 * 59.99556 * 21 20 18 23 23 C 1.53000 * 109.47158 * 300.00082 * 22 21 20 24 24 C 1.52990 * 109.47011 * 185.80755 * 18 17 15 25 25 H 0.97001 * 119.99236 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47134 * 55.16832 * 9 7 2 27 27 H 1.09003 * 109.46916 * 295.17237 * 9 7 2 28 28 H 1.08993 * 109.46333 * 294.18569 * 11 10 9 29 29 H 1.09002 * 109.45756 * 54.14554 * 11 10 9 30 30 H 1.08999 * 109.50529 * 179.12582 * 12 11 10 31 31 H 1.09003 * 109.50073 * 299.20571 * 12 11 10 32 32 H 1.08998 * 109.57686 * 182.46168 * 13 12 11 33 33 H 1.09006 * 109.51130 * 62.24103 * 13 12 11 34 34 H 1.09002 * 109.49756 * 297.67449 * 14 13 12 35 35 H 1.08993 * 109.50250 * 177.59321 * 14 13 12 36 36 H 1.09007 * 109.46802 * 293.90945 * 17 15 10 37 37 H 1.08995 * 109.47619 * 53.90179 * 17 15 10 38 38 H 0.96699 * 113.99817 * 180.02562 * 19 18 17 39 39 H 1.09001 * 109.47074 * 299.99980 * 20 18 17 40 40 H 1.08999 * 109.47233 * 59.99680 * 20 18 17 41 41 H 1.09001 * 109.47037 * 299.99909 * 21 20 18 42 42 H 1.09000 * 109.47713 * 179.97438 * 21 20 18 43 43 H 1.09005 * 109.47054 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.46912 * 60.00276 * 22 21 20 45 45 H 1.09001 * 109.47367 * 299.99915 * 23 22 21 46 46 H 1.09005 * 109.46770 * 179.97438 * 23 22 21 47 47 H 1.08993 * 109.47875 * 299.99683 * 24 18 17 48 48 H 1.09001 * 109.47761 * 60.00057 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3928 2.1064 -1.3949 5 1 1.5025 2.6204 0.8014 6 1 3.5949 1.4123 0.5936 7 6 2.0045 -1.1941 0.0005 8 1 1.4677 -2.1276 -0.0815 9 6 3.5071 -1.1966 0.1155 10 7 3.9888 -2.5813 0.2087 11 6 3.6129 -3.3508 -0.9842 12 6 4.2525 -4.7396 -0.9195 13 6 3.7747 -5.4586 0.3461 14 6 4.1355 -4.6124 1.5702 15 6 3.4993 -3.2273 1.4332 16 1 2.4153 -3.3291 1.3816 17 6 3.8738 -2.3722 2.6455 18 6 3.2353 -2.9637 3.9038 19 8 3.8101 -4.2441 4.1727 20 6 1.7284 -3.1165 3.6873 21 6 1.0897 -3.7074 4.9458 22 6 1.3427 -2.7748 6.1321 23 6 2.8496 -2.6221 6.3485 24 6 3.4883 -2.0317 5.0903 25 1 -0.4849 0.8401 -0.0004 26 1 3.8041 -0.6476 1.0090 27 1 3.9396 -0.7200 -0.7643 28 1 2.5284 -3.4518 -1.0243 29 1 3.9623 -2.8312 -1.8764 30 1 3.9608 -5.3158 -1.7975 31 1 5.3377 -4.6396 -0.8939 32 1 4.2613 -6.4312 0.4193 33 1 2.6939 -5.5933 0.3022 34 1 5.2187 -4.5105 1.6355 35 1 3.7605 -5.0976 2.4713 36 1 4.9578 -2.3591 2.7599 37 1 3.5118 -1.3547 2.4983 38 1 3.4514 -4.6791 4.9584 39 1 1.2900 -2.1399 3.4821 40 1 1.5483 -3.7805 2.8419 41 1 1.5281 -4.6840 5.1515 42 1 0.0161 -3.8159 4.7918 43 1 0.8880 -3.1961 7.0288 44 1 0.9043 -1.7983 5.9264 45 1 3.2880 -3.5987 6.5542 46 1 3.0297 -1.9574 7.1934 47 1 4.5617 -1.9228 5.2446 48 1 3.0498 -1.0550 4.8853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887037030.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:50 Heat of formation + Delta-G solvation = -73.295647 kcal Electronic energy + Delta-G solvation = -24772.874003 eV Core-core repulsion = 21633.287461 eV Total energy + Delta-G solvation = -3139.586542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.94151 -38.05156 -34.62148 -33.58596 -32.45002 -31.68529 -30.69860 -29.29467 -27.29592 -25.67543 -23.48911 -22.61464 -22.06387 -21.02836 -19.99677 -19.31165 -18.59246 -16.97193 -16.64150 -15.36051 -15.09148 -14.50448 -14.16880 -14.09947 -14.05894 -13.64000 -13.49318 -13.13077 -13.05238 -12.88877 -12.47279 -12.05164 -11.94162 -11.67036 -11.34790 -11.26816 -11.21165 -11.18369 -10.98926 -10.79312 -10.58912 -10.49029 -10.43204 -10.26007 -10.10603 -10.07513 -9.71144 -9.61438 -9.50187 -9.14082 -9.00122 -8.55763 -7.02949 -6.09661 -4.07536 3.26332 3.34945 3.38763 4.39909 4.55021 4.75644 4.85824 4.89512 5.06601 5.24403 5.31688 5.33470 5.50091 5.51082 5.55965 5.60338 5.65590 5.72559 5.73501 5.84804 5.93902 6.07110 6.10473 6.16816 6.21290 6.27748 6.29296 6.30914 6.36553 6.46419 6.51128 6.55543 6.61474 6.67386 6.70991 6.76695 6.87386 6.91423 6.94236 7.09985 7.14994 7.24594 7.62909 7.96771 8.19462 8.28973 8.48868 8.94943 9.54676 11.03144 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.008067 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.885046 B = 3470.070661 C = 4891.515647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.871 3.129 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.148 3.852 10 N -0.533 5.533 11 C 0.064 3.936 12 C -0.117 4.117 13 C -0.120 4.120 14 C -0.115 4.115 15 C 0.098 3.902 16 H 0.053 0.947 17 C -0.098 4.098 18 C 0.142 3.858 19 O -0.549 6.549 20 C -0.145 4.145 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.145 4.145 25 H 0.262 0.738 26 H 0.034 0.966 27 H 0.020 0.980 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.359 0.641 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.066 0.934 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.659 -7.820 10.097 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.698 3.302 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.092 0.908 9 C 0.022 3.978 10 N -0.257 5.257 11 C -0.064 4.064 12 C -0.154 4.154 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.010 4.010 16 H 0.071 0.929 17 C -0.135 4.135 18 C 0.101 3.899 19 O -0.356 6.356 20 C -0.183 4.183 21 C -0.159 4.159 22 C -0.160 4.160 23 C -0.158 4.158 24 C -0.183 4.183 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.207 0.793 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.363 -7.534 9.574 13.744 hybrid contribution -1.019 0.989 0.311 1.454 sum 5.343 -6.545 9.885 13.004 Atomic orbital electron populations 1.69944 1.06290 1.26762 1.50709 1.24941 0.94601 0.98971 0.94415 0.86918 0.80727 0.84030 0.78486 1.20380 1.21365 1.18613 1.21681 0.91048 0.94575 1.50918 0.90812 1.20290 0.94557 0.86323 0.96680 1.62345 1.58875 1.03351 1.01122 1.21835 0.98414 0.92599 0.93554 1.21638 1.00581 0.96275 0.96954 1.21605 1.00223 0.97937 0.95983 1.21888 1.00603 0.95174 0.97563 1.21390 0.97835 0.92511 0.89295 0.92946 1.21672 1.00278 0.99925 0.91641 1.21149 0.91997 0.82670 0.94040 1.86658 1.67166 1.32692 1.49121 1.22256 0.95299 1.03189 0.97545 1.21564 1.00892 0.98316 0.95176 1.21595 0.96033 1.00439 0.97970 1.21524 0.95630 1.00834 0.97764 1.22194 1.00985 1.00033 0.95062 0.92852 0.94833 0.96228 0.94156 0.92101 0.92946 0.92148 0.93192 0.92929 0.92715 0.89370 0.91845 0.89483 0.79301 0.90301 0.90518 0.92424 0.91858 0.92411 0.91737 0.92200 0.92096 0.91534 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 21.13 27.58 -169.99 -4.69 16.44 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.09 6.39 56.52 0.36 -5.73 16 7 C -0.54 -14.74 8.27 -34.44 -0.28 -15.02 16 8 H 0.07 2.20 6.10 -52.49 -0.32 1.88 16 9 C 0.15 3.54 3.73 -4.98 -0.02 3.52 16 10 N -0.53 -11.28 4.69 -228.13 -1.07 -12.35 16 11 C 0.06 1.29 5.05 -3.84 -0.02 1.27 16 12 C -0.12 -1.93 6.09 -26.61 -0.16 -2.09 16 13 C -0.12 -1.92 6.01 -26.56 -0.16 -2.08 16 14 C -0.11 -1.95 4.76 -26.65 -0.13 -2.08 16 15 C 0.10 1.90 1.23 -67.72 -0.08 1.81 16 16 H 0.05 1.16 4.84 -51.93 -0.25 0.90 16 17 C -0.10 -1.77 3.89 -26.73 -0.10 -1.87 16 18 C 0.14 2.12 0.77 -90.62 -0.07 2.05 16 19 O -0.55 -7.56 9.54 -35.23 -0.34 -7.90 16 20 C -0.15 -2.28 4.44 -26.73 -0.12 -2.40 16 21 C -0.12 -1.51 5.67 -26.73 -0.15 -1.66 16 22 C -0.12 -1.38 5.92 -26.73 -0.16 -1.53 16 23 C -0.12 -1.29 5.67 -26.75 -0.15 -1.45 16 24 C -0.14 -1.91 4.94 -26.76 -0.13 -2.04 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.81 4.79 -51.93 -0.25 0.56 16 27 H 0.02 0.48 7.68 -51.93 -0.40 0.08 16 28 H 0.04 0.90 6.60 -51.93 -0.34 0.56 16 29 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.44 5.33 -51.93 -0.28 1.16 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.76 5.89 -51.93 -0.31 1.46 16 38 H 0.36 3.88 5.70 45.56 0.26 4.14 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.08 1.34 6.20 -51.93 -0.32 1.02 16 41 H 0.06 0.62 6.78 -51.93 -0.35 0.27 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.58 6.78 -51.93 -0.35 0.22 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -28.81 337.27 -10.08 -38.89 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -8.00 Total: 7.47 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -1.84 Total: -21.62 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.30 Total: -38.37 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.34 Total: -7.90 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.69 Total: 16.44 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.81 -10.08 -38.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887037030.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.401 kcal (2) G-P(sol) polarization free energy of solvation -28.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds