Wall clock time and date at job start Tue Mar 31 2020 05:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00299 * 2 1 4 4 H 1.48496 * 109.47316 * 240.00109 * 3 2 1 5 5 H 1.48500 * 109.47157 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46716 * 120.00404 * 3 2 1 7 7 C 1.37881 * 119.99499 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00235 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46938 * 180.02562 * 9 7 2 11 11 C 1.46841 * 111.00029 * 63.39141 * 10 9 7 12 12 C 1.53043 * 109.52355 * 185.83617 * 11 10 9 13 13 C 1.53125 * 109.27825 * 300.82248 * 12 11 10 14 14 C 1.53118 * 109.16131 * 57.65016 * 13 12 11 15 15 C 1.46857 * 110.99463 * 187.59783 * 10 9 7 16 16 H 1.08995 * 109.45255 * 294.17191 * 15 10 9 17 17 C 1.52998 * 109.46202 * 54.14564 * 15 10 9 18 18 C 1.53004 * 109.47232 * 67.50402 * 17 15 10 19 19 O 1.42899 * 109.47077 * 66.29753 * 18 17 15 20 20 C 1.52999 * 109.46850 * 306.30031 * 18 17 15 21 21 C 1.53004 * 109.46850 * 179.97438 * 20 18 17 22 22 C 1.53000 * 109.47137 * 59.99862 * 21 20 18 23 23 C 1.53007 * 109.47146 * 299.99807 * 22 21 20 24 24 C 1.52997 * 109.46970 * 186.29554 * 18 17 15 25 25 H 0.97005 * 119.99453 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46952 * 60.00141 * 9 7 2 27 27 H 1.08997 * 109.47005 * 300.00323 * 9 7 2 28 28 H 1.08994 * 109.46274 * 305.84824 * 11 10 9 29 29 H 1.09001 * 109.46487 * 65.83040 * 11 10 9 30 30 H 1.08996 * 109.50327 * 180.87828 * 12 11 10 31 31 H 1.08998 * 109.50150 * 60.75592 * 12 11 10 32 32 H 1.08999 * 109.51662 * 297.74860 * 13 12 11 33 33 H 1.09001 * 109.52165 * 177.56083 * 13 12 11 34 34 H 1.08993 * 109.50133 * 62.28870 * 14 13 12 35 35 H 1.08998 * 109.50244 * 182.36481 * 14 13 12 36 36 H 1.08999 * 109.47084 * 187.50315 * 17 15 10 37 37 H 1.09000 * 109.47053 * 307.50356 * 17 15 10 38 38 H 0.96698 * 114.00050 * 180.15613 * 19 18 17 39 39 H 1.09003 * 109.47031 * 299.99299 * 20 18 17 40 40 H 1.08995 * 109.47516 * 60.00122 * 20 18 17 41 41 H 1.08995 * 109.47275 * 299.99825 * 21 20 18 42 42 H 1.08998 * 109.47022 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.47058 * 180.02562 * 22 21 20 44 44 H 1.08997 * 109.47573 * 59.99713 * 22 21 20 45 45 H 1.08997 * 109.46807 * 300.00375 * 23 22 21 46 46 H 1.08995 * 109.47274 * 180.02562 * 23 22 21 47 47 H 1.08998 * 109.47398 * 299.99953 * 24 18 17 48 48 H 1.09001 * 109.46922 * 60.00510 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6961 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 3.0142 -3.6168 1.2251 12 6 4.0910 -4.6998 1.1266 13 6 3.4207 -6.0630 0.9339 14 6 2.5465 -6.0201 -0.3225 15 6 1.5144 -4.8988 -0.1818 16 1 0.8805 -5.0950 0.6828 17 6 0.6513 -4.8391 -1.4437 18 6 1.5545 -4.7504 -2.6756 19 8 2.2942 -5.9653 -2.8124 20 6 2.5244 -3.5783 -2.5134 21 6 3.4279 -3.4899 -3.7450 22 6 2.5695 -3.2728 -4.9928 23 6 1.5996 -4.4450 -5.1549 24 6 0.6956 -4.5330 -3.9230 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 3.4886 -2.6432 1.3480 29 1 2.3731 -3.8193 2.0831 30 1 4.6811 -4.7107 2.0429 31 1 4.7408 -4.4906 0.2769 32 1 2.8010 -6.2900 1.8013 33 1 4.1850 -6.8318 0.8198 34 1 3.1721 -5.8316 -1.1948 35 1 2.0337 -6.9745 -0.4418 36 1 0.0377 -5.7378 -1.5071 37 1 0.0067 -3.9612 -1.4018 38 1 2.8909 -5.9789 -3.5732 39 1 1.9601 -2.6515 -2.4091 40 1 3.1362 -3.7332 -1.6248 41 1 3.9921 -4.4167 -3.8490 42 1 4.1186 -2.6546 -3.6297 43 1 3.2132 -3.2103 -5.8702 44 1 2.0052 -2.3460 -4.8889 45 1 2.1638 -5.3717 -5.2588 46 1 0.9884 -4.2905 -6.0440 47 1 0.0046 -5.3680 -4.0384 48 1 0.1314 -3.6062 -3.8186 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887037031.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:52 Heat of formation + Delta-G solvation = -59.550748 kcal Electronic energy + Delta-G solvation = -25196.707173 eV Core-core repulsion = 22057.716655 eV Total energy + Delta-G solvation = -3138.990518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.06833 -37.76091 -34.45413 -33.59127 -32.52022 -31.47103 -30.35357 -29.06962 -26.99280 -25.68226 -23.64237 -22.33537 -21.91355 -21.10455 -20.06506 -19.03391 -18.65903 -16.67806 -16.28446 -15.26031 -14.90498 -14.53477 -14.25998 -13.99052 -13.75446 -13.50905 -13.29343 -13.22194 -13.14556 -12.47610 -12.32952 -11.97741 -11.70943 -11.43480 -11.27626 -11.22100 -11.07602 -11.02669 -10.88693 -10.79004 -10.68966 -10.44200 -10.32392 -10.02775 -9.98243 -9.90989 -9.77333 -9.42259 -9.23829 -9.05382 -8.78039 -8.37677 -6.88189 -6.01776 -4.02016 3.32661 3.37323 3.39854 4.42520 4.68279 5.02459 5.04373 5.10854 5.15237 5.33739 5.42314 5.43643 5.52863 5.58019 5.70778 5.75131 5.81154 5.92894 5.96618 6.01731 6.07725 6.10379 6.15976 6.23126 6.28207 6.33110 6.39521 6.43427 6.45484 6.52486 6.57437 6.65633 6.69501 6.71659 6.78038 6.87900 6.89505 7.12558 7.23102 7.40806 7.43616 7.71054 7.84343 8.13325 8.16071 8.27993 8.61339 9.05771 9.61770 11.08802 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.007985 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.513416 B = 3505.622573 C = 4679.264755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.186 3.814 10 N -0.517 5.517 11 C 0.061 3.939 12 C -0.116 4.116 13 C -0.122 4.122 14 C -0.113 4.113 15 C 0.087 3.913 16 H 0.022 0.978 17 C -0.104 4.104 18 C 0.148 3.852 19 O -0.554 6.554 20 C -0.157 4.157 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.147 4.147 25 H 0.260 0.740 26 H 0.041 0.959 27 H -0.015 1.015 28 H 0.082 0.918 29 H 0.016 0.984 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.104 0.896 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.359 0.641 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.047 0.953 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.786 -10.503 -5.951 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.062 3.938 10 N -0.242 5.242 11 C -0.068 4.068 12 C -0.154 4.154 13 C -0.159 4.159 14 C -0.150 4.150 15 C -0.022 4.022 16 H 0.040 0.960 17 C -0.142 4.142 18 C 0.108 3.892 19 O -0.361 6.361 20 C -0.194 4.194 21 C -0.161 4.161 22 C -0.161 4.161 23 C -0.154 4.154 24 C -0.185 4.185 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.003 0.997 28 H 0.100 0.900 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.122 0.878 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.207 0.793 39 H 0.102 0.898 40 H 0.147 0.853 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.586 -10.459 -5.798 12.808 hybrid contribution -0.083 1.092 0.164 1.108 sum 4.503 -9.367 -5.634 11.822 Atomic orbital electron populations 1.69947 1.05976 1.26710 1.51136 1.24954 0.94785 0.99094 0.95642 0.86648 0.79500 0.83181 0.78593 1.20226 1.21512 1.20411 1.21107 0.93330 0.89898 1.49747 0.91984 1.19851 0.90506 0.87346 0.96142 1.62379 1.25333 1.02295 1.34232 1.21972 0.94880 0.98948 0.90970 1.21615 0.98080 0.94909 1.00748 1.21634 0.98771 0.96941 0.98577 1.21944 0.97956 0.96614 0.98522 1.21488 0.94041 0.91376 0.95301 0.95992 1.21781 0.97151 1.02080 0.93165 1.21027 0.90922 0.84569 0.92639 1.86647 1.59419 1.39273 1.50804 1.22895 0.99143 0.98513 0.98851 1.21641 0.98370 1.00521 0.95563 1.21610 0.97893 0.98606 0.97979 1.21499 0.97850 0.98377 0.97706 1.22247 0.98566 1.02085 0.95552 0.92997 0.94145 0.99707 0.89955 0.96615 0.93031 0.91680 0.93547 0.93113 0.87779 0.93204 0.92436 0.89521 0.79324 0.89842 0.85267 0.93401 0.92239 0.93091 0.91838 0.92547 0.92581 0.92362 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.50 -13.28 8.24 -34.44 -0.28 -13.56 16 8 H 0.06 1.63 6.95 -52.49 -0.36 1.26 16 9 C 0.19 4.54 3.32 -4.98 -0.02 4.53 16 10 N -0.52 -10.35 1.21 -228.12 -0.28 -10.62 16 11 C 0.06 1.16 5.28 -3.83 -0.02 1.14 16 12 C -0.12 -1.82 6.09 -26.64 -0.16 -1.99 16 13 C -0.12 -1.81 6.00 -26.61 -0.16 -1.97 16 14 C -0.11 -1.80 4.02 -26.65 -0.11 -1.91 16 15 C 0.09 1.57 2.04 -67.72 -0.14 1.43 16 16 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 17 C -0.10 -1.81 4.38 -26.73 -0.12 -1.93 16 18 C 0.15 2.30 0.68 -90.62 -0.06 2.24 16 19 O -0.55 -7.91 9.23 -35.23 -0.33 -8.24 16 20 C -0.16 -2.70 3.31 -26.73 -0.09 -2.79 16 21 C -0.12 -1.80 5.67 -26.73 -0.15 -1.95 16 22 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 23 C -0.12 -1.45 5.67 -26.70 -0.15 -1.60 16 24 C -0.15 -2.11 4.95 -26.70 -0.13 -2.24 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.04 1.04 4.70 -51.93 -0.24 0.79 16 27 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 28 H 0.08 1.71 6.53 -51.93 -0.34 1.37 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.10 1.70 4.60 -51.93 -0.24 1.46 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.69 5.74 -51.93 -0.30 1.39 16 38 H 0.36 4.28 5.69 45.56 0.26 4.54 16 39 H 0.08 1.75 6.32 -51.93 -0.33 1.43 16 40 H 0.13 2.45 4.58 -51.93 -0.24 2.21 16 41 H 0.05 0.61 6.77 -51.93 -0.35 0.26 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.63 6.78 -51.93 -0.35 0.27 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -27.09 334.73 -9.66 -36.75 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -7.97 Total: 6.98 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -1.85 Total: -20.94 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.46 Total: -35.80 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.33 Total: -8.24 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.09 -9.66 -36.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887037031.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.801 kcal (2) G-P(sol) polarization free energy of solvation -27.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds