Wall clock time and date at job start Tue Mar 31 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86809 * 119.99707 * 2 1 4 4 H 1.48500 * 109.46849 * 270.00316 * 3 2 1 5 5 H 1.48499 * 109.47019 * 30.00371 * 3 2 1 6 6 H 1.48496 * 109.47069 * 150.00268 * 3 2 1 7 7 C 1.37875 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00071 * 159.17229 * 7 2 1 9 9 C 1.50697 * 119.99811 * 339.16722 * 7 2 1 10 10 C 1.52997 * 115.55516 * 324.16408 * 9 7 2 11 11 N 1.46903 * 109.46941 * 281.01348 * 10 9 7 12 12 C 1.46896 * 110.99664 * 185.24500 * 11 10 9 13 13 H 1.09001 * 109.47337 * 327.91200 * 12 11 10 14 14 C 1.53000 * 109.47530 * 87.91237 * 12 11 10 15 15 C 1.53008 * 109.46813 * 59.99662 * 14 12 11 16 16 C 1.53000 * 109.46954 * 60.00339 * 15 14 12 17 17 C 1.52995 * 109.47130 * 299.99846 * 16 15 14 18 18 C 1.53000 * 109.47003 * 207.91367 * 12 11 10 19 19 H 1.09001 * 109.47563 * 179.97438 * 18 12 11 20 20 C 1.52995 * 109.47502 * 59.99897 * 18 12 11 21 21 C 1.52997 * 109.47699 * 174.99993 * 20 18 12 22 22 C 1.53000 * 109.47257 * 179.97438 * 21 20 18 23 23 O 1.42908 * 109.46988 * 180.02562 * 22 21 20 24 24 C 1.53012 * 117.51334 * 109.86564 * 9 7 2 25 25 C 1.53000 * 117.49800 * 178.48972 * 9 7 2 26 26 H 0.96994 * 120.00447 * 5.07808 * 1 2 3 27 27 H 1.08997 * 109.47388 * 161.00985 * 10 9 7 28 28 H 1.08998 * 109.46670 * 41.01247 * 10 9 7 29 29 H 1.00900 * 111.00147 * 61.29066 * 11 10 9 30 30 H 1.09001 * 109.47232 * 179.97438 * 14 12 11 31 31 H 1.08996 * 109.46808 * 299.99807 * 14 12 11 32 32 H 1.08995 * 109.46550 * 180.02562 * 15 14 12 33 33 H 1.09000 * 109.46737 * 300.00338 * 15 14 12 34 34 H 1.09001 * 109.46937 * 179.97438 * 16 15 14 35 35 H 1.08997 * 109.47102 * 59.99697 * 16 15 14 36 36 H 1.09009 * 109.47514 * 300.00352 * 17 16 15 37 37 H 1.09000 * 109.47292 * 180.02562 * 17 16 15 38 38 H 1.09006 * 109.47307 * 295.00274 * 20 18 12 39 39 H 1.08998 * 109.47299 * 54.99962 * 20 18 12 40 40 H 1.08997 * 109.47126 * 300.00490 * 21 20 18 41 41 H 1.09003 * 109.46661 * 60.00126 * 21 20 18 42 42 H 1.08997 * 109.47666 * 300.00420 * 22 21 20 43 43 H 1.09003 * 109.46969 * 60.00575 * 22 21 20 44 44 H 0.96696 * 113.99633 * 180.02562 * 23 22 21 45 45 H 1.09000 * 117.49235 * 214.96815 * 24 9 7 46 46 H 1.08994 * 117.50044 * 359.97438 * 24 9 7 47 47 H 1.08998 * 117.50011 * 359.97438 * 25 9 7 48 48 H 1.09002 * 117.49893 * 144.98077 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0317 -1.2244 -0.3331 9 6 1.3250 -2.4566 0.4630 10 6 0.3388 -2.2886 1.6207 11 7 1.0802 -2.1905 2.8851 12 6 0.1627 -2.1530 4.0317 13 1 -0.7613 -1.6528 3.7415 14 6 -0.1504 -3.5815 4.4814 15 6 1.1466 -4.2837 4.8887 16 6 1.8008 -3.5183 6.0406 17 6 2.1138 -2.0898 5.5910 18 6 0.8169 -1.3876 5.1836 19 1 0.1360 -1.3593 6.0343 20 6 1.1300 0.0410 4.7340 21 6 1.6688 0.8426 5.9205 22 6 1.9824 2.2710 5.4707 23 8 2.4863 3.0196 6.5789 24 6 0.9995 -3.5134 -0.5946 25 6 2.1320 -3.7552 0.4054 26 1 -0.4850 0.8367 -0.0743 27 1 -0.3291 -3.1491 1.6568 28 1 -0.2458 -1.3809 1.4709 29 1 1.6914 -1.3877 2.8846 30 1 -0.8309 -3.5537 5.3324 31 1 -0.6165 -4.1268 3.6607 32 1 0.9235 -5.3015 5.2086 33 1 1.8273 -4.3115 4.0379 34 1 2.7245 -4.0188 6.3311 35 1 1.1200 -3.4904 6.8914 36 1 2.7946 -2.1175 4.7401 37 1 2.5803 -1.5446 6.4115 38 1 1.8784 0.0168 3.9419 39 1 0.2207 0.5118 4.3604 40 1 0.9204 0.8668 6.7126 41 1 2.5781 0.3718 6.2941 42 1 2.7310 2.2465 4.6788 43 1 1.0733 2.7420 5.0969 44 1 2.7065 3.9368 6.3662 45 1 0.0828 -4.0888 -0.4655 46 1 1.2765 -3.2952 -1.6259 47 1 3.1542 -3.6964 0.0317 48 1 1.9605 -4.4897 1.1924 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926344553.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:10 Heat of formation + Delta-G solvation = -56.181305 kcal Electronic energy + Delta-G solvation = -23935.085955 eV Core-core repulsion = 20796.241547 eV Total energy + Delta-G solvation = -3138.844408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.22959 -37.06549 -36.51375 -33.87592 -33.01289 -32.18750 -29.85356 -28.88850 -25.70119 -25.16034 -23.95438 -22.26175 -21.48583 -20.93462 -20.36993 -18.95032 -18.38807 -17.27507 -16.27250 -15.63898 -15.22176 -15.02284 -14.60647 -14.19466 -14.04158 -13.73262 -13.50190 -13.22391 -13.02680 -12.51158 -12.13688 -11.98100 -11.85245 -11.75295 -11.34519 -11.23549 -11.11132 -10.96807 -10.89030 -10.85441 -10.63295 -10.43188 -10.40669 -10.15163 -10.08818 -9.96459 -9.71906 -9.49408 -9.08287 -9.04955 -8.59596 -8.08644 -7.22490 -6.08401 -4.05441 3.18944 3.28209 3.33853 4.16953 4.32343 4.86455 4.94546 5.02280 5.05928 5.09516 5.29756 5.30787 5.42432 5.53527 5.58393 5.72555 5.77499 5.78200 5.82175 5.87993 5.96454 5.99759 6.07783 6.13459 6.21625 6.26768 6.31237 6.39156 6.48034 6.56841 6.58324 6.65326 6.67834 6.73081 6.75788 6.87637 6.91195 7.04808 7.09596 7.23604 7.48497 7.56128 7.60466 7.99032 8.21771 8.45466 8.52866 8.89494 9.48304 10.90637 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.008082 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.670679 B = 3463.856206 C = 5526.535172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.488 4.488 8 H 0.059 0.941 9 C 0.060 3.940 10 C 0.086 3.914 11 N -0.674 5.674 12 C 0.091 3.909 13 H 0.035 0.965 14 C -0.102 4.102 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.110 4.110 18 C -0.082 4.082 19 H 0.065 0.935 20 C -0.120 4.120 21 C -0.115 4.115 22 C 0.071 3.929 23 O -0.578 6.578 24 C -0.207 4.207 25 C -0.194 4.194 26 H 0.260 0.740 27 H 0.030 0.970 28 H 0.082 0.918 29 H 0.342 0.658 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.044 0.956 44 H 0.376 0.624 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 -0.109 11.679 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.526 4.526 8 H 0.077 0.923 9 C 0.059 3.941 10 C -0.042 4.042 11 N -0.307 5.307 12 C -0.019 4.019 13 H 0.053 0.947 14 C -0.140 4.140 15 C -0.147 4.147 16 C -0.150 4.150 17 C -0.147 4.147 18 C -0.101 4.101 19 H 0.084 0.916 20 C -0.157 4.157 21 C -0.152 4.152 22 C -0.007 4.007 23 O -0.384 6.384 24 C -0.245 4.245 25 C -0.231 4.231 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.100 0.900 29 H 0.162 0.838 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.223 0.777 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.753 -1.214 12.090 12.174 hybrid contribution 0.054 2.281 -0.661 2.376 sum 0.807 1.067 11.429 11.507 Atomic orbital electron populations 1.69921 1.06032 1.26621 1.48130 1.24922 0.94512 0.98779 0.94726 0.86845 0.80545 0.83879 0.78486 1.20689 1.21104 1.19508 1.20547 0.97986 0.90633 1.43386 0.92302 1.18851 0.95075 0.87673 0.92461 1.21680 0.94878 1.01006 0.86645 1.60530 1.20702 1.48031 1.01475 1.21409 0.94661 0.94552 0.91289 0.94669 1.21465 0.96919 0.96218 0.99408 1.21383 0.97809 0.96752 0.98751 1.21453 0.99649 0.96070 0.97789 1.21546 0.97255 0.94962 1.00946 1.21252 0.97510 0.93517 0.97800 0.91614 1.21621 1.01628 0.95016 0.97472 1.21530 1.01884 0.93091 0.98723 1.22293 0.97443 0.92688 0.88227 1.86450 1.87051 1.27377 1.37489 1.22953 0.97609 1.07879 0.96100 1.22681 0.95005 1.03651 1.01783 0.92930 0.95147 0.89986 0.83790 0.93305 0.92461 0.93795 0.90050 0.92841 0.93216 0.90626 0.92889 0.90891 0.91899 0.91715 0.91008 0.93424 0.93759 0.77739 0.92177 0.90892 0.91430 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.22 11.07 55.43 0.61 -22.60 16 2 C 0.07 1.90 5.07 -17.82 -0.09 1.81 16 3 Si 0.88 19.91 29.59 -169.99 -5.03 14.88 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.49 -12.85 8.98 -34.44 -0.31 -13.16 16 8 H 0.06 1.58 7.90 -52.48 -0.41 1.17 16 9 C 0.06 1.46 1.91 -155.66 -0.30 1.16 16 10 C 0.09 1.94 5.09 -3.82 -0.02 1.92 16 11 N -0.67 -12.91 4.83 -106.73 -0.52 -13.43 16 12 C 0.09 1.50 2.30 -67.71 -0.16 1.35 16 13 H 0.04 0.64 7.81 -51.93 -0.41 0.23 16 14 C -0.10 -1.53 5.56 -26.73 -0.15 -1.68 16 15 C -0.11 -1.55 5.77 -26.73 -0.15 -1.70 16 16 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 17 C -0.11 -1.49 4.79 -26.73 -0.13 -1.61 16 18 C -0.08 -1.16 1.95 -90.62 -0.18 -1.34 16 19 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 20 C -0.12 -1.74 4.34 -26.73 -0.12 -1.86 16 21 C -0.11 -1.51 5.34 -26.73 -0.14 -1.65 16 22 C 0.07 0.92 7.05 37.16 0.26 1.18 16 23 O -0.58 -7.20 13.66 -35.23 -0.48 -7.68 16 24 C -0.21 -4.80 9.88 -26.72 -0.26 -5.07 16 25 C -0.19 -4.28 9.93 -26.73 -0.27 -4.55 16 26 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 27 H 0.03 0.68 7.36 -51.93 -0.38 0.29 16 28 H 0.08 2.07 5.40 -51.93 -0.28 1.79 16 29 H 0.34 6.93 6.00 -39.29 -0.24 6.69 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.93 7.59 -51.93 -0.39 0.53 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.33 7.60 -51.93 -0.39 0.93 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.15 7.40 -51.92 -0.38 0.77 16 37 H 0.05 0.66 6.57 -51.93 -0.34 0.32 16 38 H 0.07 1.19 6.41 -51.93 -0.33 0.85 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.94 6.57 -51.93 -0.34 0.60 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.38 2.96 9.12 45.56 0.42 3.37 16 45 H 0.06 1.33 8.09 -51.93 -0.42 0.91 16 46 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 47 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 48 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 364.19 15.07 5.49 5.49 Total: -1.00 -26.97 364.19 -10.21 -37.18 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -8.12 Total: 12.95 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -2.16 Total: -26.78 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.10 Total: -36.03 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.48 Total: -7.68 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -26.97 -10.21 -37.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926344553.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.004 kcal (2) G-P(sol) polarization free energy of solvation -26.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds