Wall clock time and date at job start Tue Mar 31 2020 05:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00161 * 2 1 4 4 H 1.48497 * 109.47091 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46647 * 300.00103 * 3 2 1 6 6 H 1.48500 * 109.47208 * 59.99591 * 3 2 1 7 7 C 1.37877 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99829 * 173.33576 * 7 2 1 9 9 C 1.50698 * 120.00218 * 353.34193 * 7 2 1 10 10 C 1.53003 * 115.54861 * 85.26134 * 9 7 2 11 11 N 1.46902 * 109.47417 * 39.56960 * 10 9 7 12 12 C 1.46904 * 111.00001 * 174.68942 * 11 10 9 13 13 H 1.08996 * 109.46790 * 325.00228 * 12 11 10 14 14 C 1.52999 * 109.46868 * 85.00511 * 12 11 10 15 15 C 1.53000 * 109.47115 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46910 * 299.99706 * 15 14 12 17 17 C 1.53006 * 109.46825 * 60.00017 * 16 15 14 18 18 C 1.52998 * 109.46764 * 205.00364 * 12 11 10 19 19 H 1.08995 * 109.47267 * 300.00066 * 18 12 11 20 20 C 1.52999 * 109.47308 * 60.00416 * 18 12 11 21 21 C 1.52995 * 109.46910 * 184.99493 * 20 18 12 22 22 C 1.53006 * 109.47181 * 179.97438 * 21 20 18 23 23 O 1.42896 * 109.47274 * 180.02562 * 22 21 20 24 24 C 1.52996 * 117.51772 * 230.95800 * 9 7 2 25 25 C 1.52991 * 117.50148 * 299.58968 * 9 7 2 26 26 H 0.96996 * 119.99633 * 5.04478 * 1 2 3 27 27 H 1.09005 * 109.46657 * 279.57218 * 10 9 7 28 28 H 1.09000 * 109.47284 * 159.57369 * 10 9 7 29 29 H 1.00896 * 110.99901 * 298.64694 * 11 10 9 30 30 H 1.09008 * 109.46820 * 299.99717 * 14 12 11 31 31 H 1.08995 * 109.47242 * 59.99886 * 14 12 11 32 32 H 1.09005 * 109.47293 * 59.99635 * 15 14 12 33 33 H 1.08996 * 109.47416 * 179.97438 * 15 14 12 34 34 H 1.08995 * 109.47262 * 300.00066 * 16 15 14 35 35 H 1.08998 * 109.47250 * 179.97438 * 16 15 14 36 36 H 1.09008 * 109.46653 * 180.02562 * 17 16 15 37 37 H 1.08995 * 109.47162 * 59.99987 * 17 16 15 38 38 H 1.08997 * 109.46879 * 304.99372 * 20 18 12 39 39 H 1.08993 * 109.47206 * 64.99836 * 20 18 12 40 40 H 1.08995 * 109.47869 * 300.00079 * 21 20 18 41 41 H 1.09006 * 109.47264 * 60.00208 * 21 20 18 42 42 H 1.08995 * 109.47237 * 300.01022 * 22 21 20 43 43 H 1.09006 * 109.46398 * 60.00233 * 22 21 20 44 44 H 0.96699 * 114.00166 * 180.02562 * 23 22 21 45 45 H 1.09005 * 117.49664 * 214.96838 * 24 9 7 46 46 H 1.08994 * 117.49939 * 359.97438 * 24 9 7 47 47 H 1.09004 * 117.49541 * 359.97438 * 25 9 7 48 48 H 1.09002 * 117.50159 * 144.99263 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0790 -1.1973 -0.1080 9 6 1.2586 -2.4947 0.1524 10 6 0.6954 -3.0873 -1.1409 11 7 1.6646 -2.8988 -2.2286 12 6 1.2134 -3.5661 -3.4572 13 1 0.6878 -4.4854 -3.1992 14 6 0.2704 -2.6375 -4.2249 15 6 -0.2001 -3.3326 -5.5041 16 6 1.0107 -3.6659 -6.3782 17 6 1.9537 -4.5945 -5.6104 18 6 2.4245 -3.8989 -4.3309 19 1 2.9501 -2.9795 -4.5888 20 6 3.3675 -4.8274 -3.5632 21 6 4.6358 -5.0603 -4.3866 22 6 5.5792 -5.9883 -3.6186 23 8 6.7641 -6.2053 -4.3873 24 6 1.7522 -3.4720 1.2210 25 6 0.4491 -2.6993 1.4344 26 1 -0.4849 0.8368 -0.0739 27 1 -0.2379 -2.5846 -1.3946 28 1 0.5083 -4.1521 -1.0014 29 1 1.8382 -1.9185 -2.3924 30 1 -0.5924 -2.4004 -3.6023 31 1 0.7960 -1.7182 -4.4828 32 1 -0.7259 -4.2519 -5.2459 33 1 -0.8723 -2.6714 -6.0509 34 1 1.5364 -2.7468 -6.6364 35 1 0.6756 -4.1616 -7.2893 36 1 2.8166 -4.8316 -6.2330 37 1 1.4280 -5.5136 -5.3521 38 1 3.6320 -4.3694 -2.6102 39 1 2.8713 -5.7809 -3.3829 40 1 4.3715 -5.5182 -5.3397 41 1 5.1321 -4.1067 -4.5670 42 1 5.8436 -5.5300 -2.6656 43 1 5.0831 -6.9420 -3.4379 44 1 7.4088 -6.7863 -3.9608 45 1 1.6757 -4.5372 1.0027 46 1 2.6169 -3.1746 1.8142 47 1 0.4563 -1.8933 2.1682 48 1 -0.4848 -3.2560 1.3565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926344554.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:12 Heat of formation + Delta-G solvation = -64.317544 kcal Electronic energy + Delta-G solvation = -23341.327670 eV Core-core repulsion = 20202.130448 eV Total energy + Delta-G solvation = -3139.197222 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.08616 -37.06377 -36.59456 -33.86827 -33.54454 -31.89006 -29.87822 -28.79219 -25.61347 -25.09796 -23.93494 -22.32196 -21.03985 -20.83767 -20.33300 -19.75590 -18.83548 -17.26623 -15.90556 -15.57708 -15.36108 -14.59401 -14.51094 -14.21536 -14.03463 -13.71442 -13.58216 -13.48048 -13.05421 -12.52798 -12.48557 -12.22325 -11.86703 -11.44481 -11.34725 -11.25768 -11.04367 -10.97984 -10.87768 -10.77959 -10.71451 -10.53764 -10.42181 -10.14765 -10.11568 -9.97803 -9.92190 -9.72666 -9.28587 -8.75950 -8.41113 -8.01954 -7.24299 -5.99901 -4.03842 3.28278 3.37931 3.42370 4.20910 4.42187 4.81606 4.94218 4.98096 5.10569 5.24801 5.28320 5.30085 5.41707 5.44074 5.49411 5.56639 5.70166 5.75606 5.78293 5.80477 5.84573 5.99496 6.04935 6.09508 6.20815 6.24466 6.28155 6.32156 6.33930 6.44313 6.45520 6.54242 6.60921 6.65828 6.75427 6.83579 6.85040 6.89447 7.04129 7.17868 7.49691 7.55843 7.57393 7.91942 8.17874 8.48696 8.58440 8.99383 9.60255 11.08103 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.005208 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.831262 B = 5375.530173 C = 6156.028973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.068 3.932 3 Si 0.884 3.116 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.480 4.480 8 H 0.061 0.939 9 C 0.053 3.947 10 C 0.109 3.891 11 N -0.667 5.667 12 C 0.092 3.908 13 H 0.064 0.936 14 C -0.148 4.148 15 C -0.114 4.114 16 C -0.118 4.118 17 C -0.115 4.115 18 C -0.069 4.069 19 H 0.067 0.933 20 C -0.104 4.104 21 C -0.119 4.119 22 C 0.074 3.926 23 O -0.580 6.580 24 C -0.208 4.208 25 C -0.164 4.164 26 H 0.257 0.743 27 H 0.027 0.973 28 H 0.034 0.966 29 H 0.353 0.647 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.042 0.958 44 H 0.375 0.625 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.848 -10.100 -9.794 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.712 3.288 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.518 4.518 8 H 0.080 0.920 9 C 0.052 3.948 10 C -0.020 4.020 11 N -0.298 5.298 12 C -0.019 4.019 13 H 0.082 0.918 14 C -0.188 4.188 15 C -0.153 4.153 16 C -0.156 4.156 17 C -0.153 4.153 18 C -0.088 4.088 19 H 0.086 0.914 20 C -0.141 4.141 21 C -0.157 4.157 22 C -0.004 4.004 23 O -0.385 6.385 24 C -0.245 4.245 25 C -0.202 4.202 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.173 0.827 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.221 0.779 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.772 -10.083 -9.918 14.638 hybrid contribution -0.223 1.211 0.209 1.249 sum 3.549 -8.872 -9.709 13.622 Atomic orbital electron populations 1.70009 1.05800 1.26329 1.49767 1.24987 0.94733 0.98675 0.95005 0.86662 0.80443 0.84208 0.77475 1.19670 1.21235 1.21186 1.20429 0.93150 0.88490 1.49739 0.92045 1.18797 0.96874 0.93528 0.85600 1.21357 0.92774 0.96071 0.91800 1.60496 1.45405 1.20074 1.03828 1.21540 0.93087 0.96843 0.90384 0.91754 1.22290 1.00430 0.99419 0.96619 1.21480 0.97212 1.00153 0.96409 1.21531 0.96625 0.99650 0.97766 1.21667 0.98639 0.98360 0.96652 1.21051 0.95780 0.98345 0.93634 0.91406 1.21425 0.93586 0.99135 0.99992 1.21609 0.95454 0.99369 0.99247 1.22282 0.85525 0.98396 0.94173 1.86471 1.30957 1.72043 1.48994 1.22978 0.97980 0.95583 1.07983 1.22514 0.92181 1.01288 1.04265 0.93300 0.95502 0.94757 0.82659 0.91933 0.92032 0.92436 0.92728 0.92198 0.92710 0.92091 0.92377 0.89351 0.92925 0.91852 0.91547 0.93382 0.94012 0.77873 0.91991 0.90871 0.90366 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.27 12.93 55.43 0.72 -23.56 16 2 C 0.07 1.81 5.39 -17.82 -0.10 1.71 16 3 Si 0.88 20.74 29.55 -169.99 -5.02 15.72 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.48 -12.51 7.47 -34.44 -0.26 -12.77 16 8 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 9 C 0.05 1.26 1.76 -155.67 -0.27 0.99 16 10 C 0.11 2.36 5.63 -3.82 -0.02 2.34 16 11 N -0.67 -12.84 5.16 -106.72 -0.55 -13.39 16 12 C 0.09 1.46 1.91 -67.71 -0.13 1.33 16 13 H 0.06 1.04 7.71 -51.93 -0.40 0.64 16 14 C -0.15 -2.28 5.17 -26.73 -0.14 -2.42 16 15 C -0.11 -1.45 5.92 -26.73 -0.16 -1.60 16 16 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 17 C -0.12 -1.36 4.96 -26.70 -0.13 -1.49 16 18 C -0.07 -0.95 1.91 -90.59 -0.17 -1.12 16 19 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 20 C -0.10 -1.40 4.60 -26.73 -0.12 -1.52 16 21 C -0.12 -1.49 5.34 -26.73 -0.14 -1.63 16 22 C 0.07 0.85 7.05 37.16 0.26 1.11 16 23 O -0.58 -6.72 13.66 -35.23 -0.48 -7.20 16 24 C -0.21 -4.58 9.88 -26.73 -0.26 -4.84 16 25 C -0.16 -3.87 9.46 -26.74 -0.25 -4.13 16 26 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 27 H 0.03 0.64 7.57 -51.93 -0.39 0.24 16 28 H 0.03 0.70 7.73 -51.93 -0.40 0.30 16 29 H 0.35 7.51 7.45 -39.29 -0.29 7.22 16 30 H 0.06 1.08 7.56 -51.92 -0.39 0.69 16 31 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.68 6.57 -51.92 -0.34 0.34 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.40 7.45 -51.93 -0.39 1.01 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.38 2.55 9.12 45.56 0.42 2.97 16 45 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 46 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 47 H 0.08 1.98 8.14 -51.93 -0.42 1.55 16 48 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -27.57 370.90 -10.22 -37.80 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -8.42 Total: 10.60 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -2.06 Total: -25.55 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.17 Total: -36.95 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.48 Total: -7.20 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.57 -10.22 -37.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926344554.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.520 kcal (2) G-P(sol) polarization free energy of solvation -27.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds