Wall clock time and date at job start Tue Mar 31 2020 05:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99962 * 2 1 4 4 H 1.48509 * 109.46682 * 240.00016 * 3 2 1 5 5 H 1.48493 * 109.46994 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47106 * 120.00063 * 3 2 1 7 7 C 1.37878 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99969 * 184.30292 * 7 2 1 9 9 C 1.50702 * 120.00124 * 4.29468 * 7 2 1 10 10 C 1.53006 * 115.54722 * 324.38105 * 9 7 2 11 11 N 1.46893 * 109.47032 * 305.86324 * 10 9 7 12 12 C 1.46905 * 110.99832 * 185.08749 * 11 10 9 13 13 H 1.09003 * 109.46763 * 30.53193 * 12 11 10 14 14 C 1.52999 * 109.47255 * 270.53520 * 12 11 10 15 15 C 1.53001 * 109.46924 * 299.99846 * 14 12 11 16 16 C 1.52998 * 109.47395 * 300.00074 * 15 14 12 17 17 C 1.53008 * 109.46905 * 59.99727 * 16 15 14 18 18 C 1.52995 * 109.47051 * 150.52949 * 12 11 10 19 19 H 1.09001 * 109.47274 * 179.97438 * 18 12 11 20 20 C 1.52999 * 109.47557 * 300.00386 * 18 12 11 21 21 C 1.52998 * 109.47034 * 185.00099 * 20 18 12 22 22 C 1.52998 * 109.46854 * 179.97438 * 21 20 18 23 23 O 1.42904 * 109.47393 * 179.97438 * 22 21 20 24 24 C 1.52997 * 117.49715 * 110.04837 * 9 7 2 25 25 C 1.52999 * 117.50025 * 178.71000 * 9 7 2 26 26 H 0.97001 * 119.99939 * 5.00714 * 1 2 3 27 27 H 1.09000 * 109.46575 * 185.86329 * 10 9 7 28 28 H 1.08994 * 109.47124 * 65.86771 * 10 9 7 29 29 H 1.00901 * 111.00227 * 309.03905 * 11 10 9 30 30 H 1.09001 * 109.47197 * 180.02562 * 14 12 11 31 31 H 1.09003 * 109.47212 * 59.99484 * 14 12 11 32 32 H 1.08993 * 109.47143 * 180.02562 * 15 14 12 33 33 H 1.09005 * 109.47296 * 59.99982 * 15 14 12 34 34 H 1.09001 * 109.47029 * 300.00668 * 16 15 14 35 35 H 1.08990 * 109.47695 * 179.97438 * 16 15 14 36 36 H 1.09003 * 109.46971 * 180.02562 * 17 16 15 37 37 H 1.08997 * 109.47186 * 60.00820 * 17 16 15 38 38 H 1.08997 * 109.47322 * 64.99913 * 20 18 12 39 39 H 1.09000 * 109.46937 * 304.99489 * 20 18 12 40 40 H 1.09005 * 109.47544 * 59.99775 * 21 20 18 41 41 H 1.09000 * 109.47233 * 299.99743 * 21 20 18 42 42 H 1.09003 * 109.47794 * 299.99545 * 22 21 20 43 43 H 1.09002 * 109.47066 * 60.00518 * 22 21 20 44 44 H 0.96701 * 114.00814 * 180.02562 * 23 22 21 45 45 H 1.09003 * 117.49772 * 215.00645 * 24 9 7 46 46 H 1.09000 * 117.49894 * 0.02807 * 24 9 7 47 47 H 1.09002 * 117.49623 * 359.97438 * 25 9 7 48 48 H 1.08996 * 117.50118 * 144.97599 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0822 -1.1954 0.0696 9 6 1.2542 -2.4973 -0.0989 10 6 -0.0970 -2.5365 0.6180 11 7 0.0821 -2.1432 2.0219 12 6 -1.1728 -2.2849 2.7725 13 1 -1.7609 -3.0980 2.3468 14 6 -1.9685 -0.9809 2.6866 15 6 -1.1430 0.1605 3.2841 16 6 -0.8289 -0.1498 4.7490 17 6 -0.0332 -1.4539 4.8348 18 6 -0.8587 -2.5953 4.2373 19 1 -1.7898 -2.7000 4.7943 20 6 -0.0630 -3.8993 4.3231 21 6 0.1435 -4.2749 5.7918 22 6 0.9386 -5.5792 5.8776 23 8 1.1321 -5.9299 7.2494 24 6 1.3875 -3.2929 -1.3989 25 6 2.0778 -3.7865 -0.1249 26 1 -0.4850 0.8369 -0.0733 27 1 -0.5030 -3.5470 0.5727 28 1 -0.7862 -1.8459 0.1322 29 1 0.8238 -2.6733 2.4543 30 1 -2.8994 -1.0859 3.2439 31 1 -2.1922 -0.7597 1.6430 32 1 -1.7100 1.0893 3.2234 33 1 -0.2119 0.2656 2.7272 34 1 -1.7600 -0.2551 5.3058 35 1 -0.2405 0.6630 5.1745 36 1 0.1902 -1.6752 5.8784 37 1 0.8979 -1.3488 4.2780 38 1 0.9061 -3.7659 3.8424 39 1 -0.6126 -4.6940 3.8187 40 1 -0.8256 -4.4083 6.2726 41 1 0.6930 -3.4802 6.2963 42 1 0.3888 -6.3739 5.3733 43 1 1.9078 -5.4462 5.3969 44 1 1.6304 -6.7483 7.3797 45 1 0.5126 -3.8442 -1.7435 46 1 2.0183 -2.8738 -2.1829 47 1 3.1624 -3.6919 -0.0714 48 1 1.6573 -4.6624 0.3689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926344556.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:16 Heat of formation + Delta-G solvation = -48.092764 kcal Electronic energy + Delta-G solvation = -24048.039484 eV Core-core repulsion = 20909.545821 eV Total energy + Delta-G solvation = -3138.493663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.06820 -37.11652 -36.52128 -33.79592 -32.84809 -31.92703 -29.68377 -28.71170 -25.45526 -25.10318 -23.82310 -22.18667 -21.32435 -21.05539 -20.26245 -18.83598 -18.16765 -17.34809 -16.32411 -15.66942 -15.06819 -14.72825 -14.46158 -14.16466 -13.86040 -13.59421 -13.42003 -13.08794 -12.89258 -12.47707 -11.94691 -11.78254 -11.71900 -11.63522 -11.27677 -11.15447 -10.95776 -10.83735 -10.82513 -10.61826 -10.52782 -10.41501 -10.27506 -10.03720 -10.01959 -9.74406 -9.49670 -9.33504 -9.12528 -8.76037 -8.54440 -8.00300 -6.96331 -5.72906 -3.85023 3.39327 3.43896 3.47655 4.11392 4.52241 4.92537 5.03809 5.04261 5.17259 5.22579 5.34306 5.42942 5.49108 5.63882 5.68168 5.70391 5.86438 5.94581 5.95773 6.05393 6.08503 6.12149 6.18772 6.25301 6.29962 6.36407 6.43946 6.45703 6.48996 6.63741 6.67117 6.73544 6.80426 6.88979 6.90489 6.98674 6.99770 7.16861 7.27847 7.37372 7.49510 7.51152 7.78799 8.17557 8.44049 8.53530 8.81708 9.08823 9.75096 11.19684 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.005989 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.771451 B = 4673.905130 C = 5555.256430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.092 3.908 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.481 4.481 8 H 0.050 0.950 9 C 0.063 3.937 10 C 0.113 3.887 11 N -0.634 5.634 12 C 0.098 3.902 13 H 0.023 0.977 14 C -0.092 4.092 15 C -0.107 4.107 16 C -0.113 4.113 17 C -0.107 4.107 18 C -0.085 4.085 19 H 0.063 0.937 20 C -0.116 4.116 21 C -0.117 4.117 22 C 0.073 3.927 23 O -0.578 6.578 24 C -0.211 4.211 25 C -0.221 4.221 26 H 0.254 0.746 27 H -0.032 1.032 28 H 0.117 0.883 29 H 0.320 0.680 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.047 0.953 44 H 0.376 0.624 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 -6.765 9.566 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.112 4.112 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.518 4.518 8 H 0.068 0.932 9 C 0.062 3.938 10 C -0.016 4.016 11 N -0.265 5.265 12 C -0.013 4.013 13 H 0.041 0.959 14 C -0.131 4.131 15 C -0.145 4.145 16 C -0.151 4.151 17 C -0.144 4.144 18 C -0.104 4.104 19 H 0.081 0.919 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.004 4.004 23 O -0.383 6.383 24 C -0.250 4.250 25 C -0.258 4.258 26 H 0.064 0.936 27 H -0.014 1.014 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.222 0.778 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.136 -5.387 9.597 11.443 hybrid contribution 0.797 -0.808 -0.191 1.151 sum -2.340 -6.196 9.406 11.503 Atomic orbital electron populations 1.69849 1.05401 1.25554 1.48105 1.24706 0.94587 0.97987 0.93937 0.86838 0.79738 0.84011 0.78242 1.20950 1.21508 1.20461 1.20204 0.91801 0.88729 1.51052 0.93215 1.19078 0.92924 0.89252 0.92560 1.21745 0.97886 0.93761 0.88179 1.60242 1.03672 1.60770 1.01797 1.21405 0.92780 0.95721 0.91357 0.95881 1.21338 0.95585 0.94951 1.01182 1.21363 1.02491 0.96169 0.94435 1.21490 0.98720 0.96925 0.97972 1.21514 0.99734 0.94068 0.99107 1.21301 0.98211 0.93847 0.96996 0.91854 1.21605 1.01234 0.97566 0.94991 1.21551 1.00303 0.96063 0.97521 1.22281 0.99013 0.97097 0.82035 1.86475 1.78816 1.46652 1.26375 1.22967 1.01460 1.07649 0.92880 1.22912 0.98301 1.00604 1.04031 0.93555 1.01376 0.86594 0.86102 0.94747 0.90986 0.94528 0.88469 0.93719 0.93235 0.93375 0.90527 0.91121 0.92383 0.91732 0.90895 0.93932 0.93499 0.77764 0.92125 0.90648 0.91020 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.66 10.13 55.43 0.56 -21.10 16 2 C 0.09 2.37 5.32 -17.82 -0.09 2.27 16 3 Si 0.88 20.72 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.48 -12.55 8.74 -34.44 -0.30 -12.86 16 8 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 9 C 0.06 1.49 2.05 -155.66 -0.32 1.17 16 10 C 0.11 2.52 4.50 -3.82 -0.02 2.51 16 11 N -0.63 -12.67 4.32 -106.73 -0.46 -13.13 16 12 C 0.10 1.70 2.31 -67.71 -0.16 1.54 16 13 H 0.02 0.42 7.65 -51.93 -0.40 0.02 16 14 C -0.09 -1.64 5.60 -26.73 -0.15 -1.79 16 15 C -0.11 -1.92 5.77 -26.73 -0.15 -2.08 16 16 C -0.11 -1.76 5.92 -26.73 -0.16 -1.92 16 17 C -0.11 -1.61 4.79 -26.73 -0.13 -1.74 16 18 C -0.08 -1.24 1.95 -90.62 -0.18 -1.41 16 19 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 20 C -0.12 -1.54 4.35 -26.73 -0.12 -1.66 16 21 C -0.12 -1.42 5.34 -26.73 -0.14 -1.57 16 22 C 0.07 0.81 7.05 37.16 0.26 1.07 16 23 O -0.58 -6.47 13.66 -35.23 -0.48 -6.95 16 24 C -0.21 -4.74 9.96 -26.69 -0.27 -5.00 16 25 C -0.22 -4.75 9.92 -26.69 -0.26 -5.01 16 26 H 0.25 6.38 8.32 -40.82 -0.34 6.04 16 27 H -0.03 -0.69 7.87 -51.93 -0.41 -1.10 16 28 H 0.12 2.90 5.68 -51.93 -0.30 2.60 16 29 H 0.32 6.32 5.81 -39.29 -0.23 6.09 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.45 7.89 -51.93 -0.41 1.04 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 2.09 7.60 -51.93 -0.39 1.70 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.66 6.56 -51.93 -0.34 0.32 16 37 H 0.08 1.31 7.36 -51.93 -0.38 0.93 16 38 H 0.07 1.01 6.41 -51.93 -0.33 0.68 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.93 6.56 -51.93 -0.34 0.59 16 42 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.38 2.41 9.12 45.56 0.42 2.82 16 45 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 46 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 47 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 48 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -26.31 363.02 -10.27 -36.58 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -8.16 Total: 9.90 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: -2.18 Total: -26.47 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.10 Total: -34.22 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.48 Total: -6.95 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -26.31 -10.27 -36.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926344556.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.516 kcal (2) G-P(sol) polarization free energy of solvation -26.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds