Wall clock time and date at job start Tue Mar 31 2020 05:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00088 * 2 1 4 4 H 1.48505 * 109.47186 * 270.00007 * 3 2 1 5 5 H 1.48503 * 109.46967 * 29.99455 * 3 2 1 6 6 H 1.48494 * 109.47165 * 149.99579 * 3 2 1 7 7 C 1.37872 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00462 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00457 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47020 * 300.00227 * 9 7 2 11 11 O 1.42909 * 109.46936 * 59.99670 * 9 7 2 12 12 C 1.52995 * 109.47528 * 179.97438 * 9 7 2 13 13 N 1.46903 * 109.47103 * 180.02562 * 12 9 7 14 14 C 1.46848 * 110.99585 * 190.00046 * 13 12 9 15 15 C 1.53039 * 109.52046 * 185.83639 * 14 13 12 16 16 C 1.53110 * 109.27958 * 300.82176 * 15 14 13 17 17 C 1.53002 * 109.52470 * 177.55692 * 16 15 14 18 18 C 1.52997 * 109.46817 * 60.12528 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47233 * 180.12333 * 17 16 15 23 23 C 1.53124 * 109.21598 * 57.62055 * 16 15 14 24 24 C 1.46840 * 110.99970 * 314.20742 * 13 12 9 25 25 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 26 26 H 0.96693 * 113.99540 * 60.00275 * 11 9 7 27 27 H 1.08998 * 109.46970 * 59.99792 * 12 9 7 28 28 H 1.09004 * 109.47012 * 299.99780 * 12 9 7 29 29 H 1.09000 * 109.46316 * 65.82208 * 14 13 12 30 30 H 1.09007 * 109.45314 * 305.84574 * 14 13 12 31 31 H 1.09002 * 109.50561 * 180.87418 * 15 14 13 32 32 H 1.09002 * 109.53249 * 60.78069 * 15 14 13 33 33 H 1.09000 * 109.52612 * 297.68733 * 16 15 14 34 34 H 1.09002 * 109.47070 * 300.12708 * 17 16 15 35 35 H 1.08996 * 109.47853 * 300.00202 * 18 17 16 36 36 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 37 37 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 39 39 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 40 40 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 41 41 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 43 43 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 44 44 H 1.09004 * 109.46724 * 60.00652 * 22 17 16 45 45 H 1.09002 * 109.49952 * 62.31615 * 23 16 15 46 46 H 1.08992 * 109.50536 * 182.43419 * 23 16 15 47 47 H 1.09005 * 109.46622 * 294.18143 * 24 13 12 48 48 H 1.09004 * 109.45921 * 54.15567 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5568 0.8903 11 8 0.4298 -2.5752 -1.1666 12 6 2.2452 -3.6621 0.0005 13 7 1.5107 -4.9343 -0.0001 14 6 2.4168 -6.0652 0.2380 15 6 1.6461 -7.3786 0.0865 16 6 0.4910 -7.4057 1.0911 17 6 -0.3200 -8.6895 0.9033 18 6 0.5833 -9.9020 1.1369 19 6 -0.2278 -11.1858 0.9497 20 6 -1.3833 -11.2098 1.9524 21 6 -2.2866 -9.9973 1.7188 22 6 -1.4757 -8.7139 1.9056 23 6 -0.4113 -6.1913 0.8546 24 6 0.4194 -4.9124 0.9822 25 1 -0.4850 0.8400 -0.0004 26 1 0.9223 -2.5300 -1.9975 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6044 -0.8895 29 1 2.8247 -5.9976 1.2465 30 1 3.2313 -6.0364 -0.4859 31 1 2.3152 -8.2174 0.2785 32 1 1.2496 -7.4538 -0.9261 33 1 0.8892 -7.3715 2.1052 34 1 -0.7179 -8.7228 -0.1110 35 1 1.4066 -9.8848 0.4229 36 1 0.9811 -9.8687 2.1511 37 1 0.4156 -12.0497 1.1165 38 1 -0.6260 -11.2193 -0.0644 39 1 -0.9850 -11.1763 2.9665 40 1 -1.9613 -12.1242 1.8187 41 1 -3.1099 -10.0147 2.4328 42 1 -2.6847 -10.0308 0.7047 43 1 -1.0779 -8.6806 2.9198 44 1 -2.1193 -7.8500 1.7392 45 1 -0.8411 -6.2467 -0.1456 46 1 -1.2111 -6.1824 1.5950 47 1 0.8367 -4.8503 1.9873 48 1 -0.2167 -4.0464 0.7990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929282487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:08 Heat of formation + Delta-G solvation = -86.393847 kcal Electronic energy + Delta-G solvation = -23215.922489 eV Core-core repulsion = 20075.767967 eV Total energy + Delta-G solvation = -3140.154522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.68315 -37.89727 -35.60862 -33.47823 -32.05387 -31.23931 -30.18977 -29.96664 -27.66791 -25.00950 -23.62859 -23.16588 -21.91465 -21.21876 -19.99184 -19.79125 -19.13809 -17.06930 -15.79628 -15.08736 -14.72117 -14.56637 -14.49028 -14.37140 -14.26123 -13.88919 -13.69997 -13.39939 -13.27927 -12.90501 -12.54332 -12.31039 -12.23222 -12.11143 -11.49684 -11.34450 -11.20784 -11.06147 -10.94135 -10.86576 -10.82951 -10.74790 -10.64678 -10.42253 -10.36557 -10.22952 -10.04508 -9.67298 -9.64998 -8.83123 -8.52521 -8.02043 -7.57736 -5.98919 -4.16701 3.28507 3.35429 3.38063 4.36796 4.52893 4.58934 4.59657 4.66108 4.97797 5.03225 5.13513 5.24343 5.28596 5.33810 5.40166 5.42841 5.51140 5.55617 5.58655 5.65399 5.79080 5.80924 5.89109 5.94198 5.95776 6.02589 6.04163 6.08737 6.09987 6.14208 6.19500 6.25367 6.27904 6.34821 6.38677 6.44213 6.48780 6.57485 6.70076 6.77059 6.89956 7.67107 7.77108 7.83908 7.90402 8.23363 8.86855 9.47581 9.63674 11.05257 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040813 B = 0.003228 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.889277 B = 8671.034688 C = 9073.249163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.079 3.921 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.573 4.573 8 H 0.054 0.946 9 C 0.230 3.770 10 H 0.058 0.942 11 O -0.556 6.556 12 C 0.030 3.970 13 N -0.527 5.527 14 C 0.053 3.947 15 C -0.108 4.108 16 C -0.082 4.082 17 C -0.079 4.079 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.108 4.108 24 C 0.052 3.948 25 H 0.260 0.740 26 H 0.345 0.655 27 H 0.024 0.976 28 H 0.063 0.937 29 H 0.022 0.978 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.019 0.981 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 -20.526 2.956 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.612 4.612 8 H 0.072 0.928 9 C 0.172 3.828 10 H 0.075 0.925 11 O -0.358 6.358 12 C -0.098 4.098 13 N -0.251 5.251 14 C -0.075 4.075 15 C -0.146 4.146 16 C -0.101 4.101 17 C -0.097 4.097 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.146 4.146 24 C -0.076 4.076 25 H 0.070 0.930 26 H 0.188 0.812 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.037 0.963 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.634 -20.526 2.967 20.803 hybrid contribution 1.479 1.147 0.508 1.940 sum -0.154 -19.379 3.474 19.688 Atomic orbital electron populations 1.70076 1.05884 1.26370 1.47163 1.25020 0.94697 0.99059 0.93888 0.86677 0.79932 0.83566 0.78211 1.20507 1.21139 1.19923 1.21668 0.93160 0.91663 1.54705 0.92768 1.19436 0.87862 0.88879 0.86597 0.92472 1.86532 1.37831 1.96313 1.15091 1.23038 0.97530 0.89843 0.99349 1.61948 1.11067 1.02739 1.49390 1.22076 0.95149 0.91622 0.98669 1.21641 0.96802 0.96225 0.99890 1.21237 0.95696 0.94193 0.98936 1.21173 0.95163 0.93924 0.99477 1.21636 0.98009 0.94022 1.01626 1.21537 0.97090 0.97657 0.99404 1.21535 0.96879 0.97858 0.99386 1.21528 0.97784 0.94840 1.01562 1.21631 0.97088 0.97434 0.99258 1.21667 0.97374 0.93529 1.02048 1.22180 0.94116 0.98917 0.92360 0.93022 0.81219 0.95807 0.91888 0.95986 0.91608 0.92195 0.91344 0.92033 0.91234 0.91765 0.92309 0.92457 0.92131 0.92248 0.92521 0.92355 0.92114 0.92280 0.91460 0.91263 0.92017 0.96289 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.47 12.84 55.43 0.71 -24.76 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.57 -15.86 8.76 -34.44 -0.30 -16.17 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.23 5.85 2.12 -27.88 -0.06 5.79 16 10 H 0.06 1.58 6.21 -51.93 -0.32 1.26 16 11 O -0.56 -14.48 12.40 -35.23 -0.44 -14.91 16 12 C 0.03 0.64 4.87 -3.83 -0.02 0.62 16 13 N -0.53 -9.82 4.67 -234.67 -1.10 -10.92 16 14 C 0.05 0.82 5.42 -3.83 -0.02 0.80 16 15 C -0.11 -1.38 4.95 -26.65 -0.13 -1.52 16 16 C -0.08 -1.02 1.84 -90.50 -0.17 -1.19 16 17 C -0.08 -0.83 1.78 -90.62 -0.16 -0.99 16 18 C -0.12 -1.07 4.85 -26.73 -0.13 -1.20 16 19 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 20 C -0.12 -0.97 5.92 -26.73 -0.16 -1.12 16 21 C -0.12 -1.05 5.92 -26.76 -0.16 -1.21 16 22 C -0.12 -1.16 4.85 -26.76 -0.13 -1.29 16 23 C -0.11 -1.60 4.96 -26.65 -0.13 -1.73 16 24 C 0.05 0.95 4.85 -3.84 -0.02 0.93 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.34 8.17 9.04 45.56 0.41 8.59 16 27 H 0.02 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.98 8.12 -51.92 -0.42 0.56 16 31 H 0.06 0.66 6.58 -51.93 -0.34 0.32 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.59 6.49 -51.93 -0.34 0.26 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.71 6.49 -51.93 -0.34 0.37 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 0.84 6.58 -51.93 -0.34 0.50 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.10 2.06 5.66 -51.93 -0.29 1.77 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -29.32 354.62 -10.63 -39.95 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -8.29 Total: 6.32 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.84 Total: -17.28 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.38 Total: -35.68 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.44 Total: -14.91 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.32 -10.63 -39.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929282487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.449 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds