Wall clock time and date at job start Tue Mar 31 2020 05:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48508 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47410 * 299.99681 * 3 2 1 6 6 H 1.48497 * 109.47504 * 60.00175 * 3 2 1 7 7 C 1.37876 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00194 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47115 * 299.99788 * 9 7 2 11 11 O 1.42905 * 109.47131 * 59.99818 * 9 7 2 12 12 C 1.52995 * 109.47524 * 179.97438 * 9 7 2 13 13 N 1.46898 * 109.47460 * 179.97438 * 12 9 7 14 14 C 1.47839 * 111.00124 * 295.94054 * 13 12 9 15 15 C 1.54909 * 104.79419 * 213.63551 * 14 13 12 16 16 C 1.55135 * 101.65568 * 37.06768 * 15 14 13 17 17 C 1.47444 * 111.00395 * 175.09352 * 13 12 9 18 18 H 1.08999 * 109.88916 * 242.67209 * 17 13 12 19 19 C 1.53010 * 109.88487 * 3.85315 * 17 13 12 20 20 C 1.53000 * 109.46858 * 182.49024 * 19 17 13 21 21 C 1.52998 * 109.47088 * 177.72398 * 20 19 17 22 22 C 1.54263 * 110.03577 * 292.17165 * 21 20 19 23 23 C 1.54891 * 104.19368 * 217.10357 * 22 21 20 24 24 C 1.54892 * 102.75010 * 37.94089 * 23 22 21 25 25 C 1.53869 * 110.03348 * 174.99776 * 21 20 19 26 26 H 0.96995 * 120.00034 * 0.02562 * 1 2 3 27 27 H 0.96694 * 113.99643 * 59.99860 * 11 9 7 28 28 H 1.09000 * 109.47298 * 60.00110 * 12 9 7 29 29 H 1.09005 * 109.47341 * 300.00025 * 12 9 7 30 30 H 1.08999 * 110.37578 * 332.45939 * 14 13 12 31 31 H 1.08996 * 110.37870 * 94.80706 * 14 13 12 32 32 H 1.09004 * 110.98873 * 278.96954 * 15 14 13 33 33 H 1.09001 * 110.99124 * 155.16455 * 15 14 13 34 34 H 1.09001 * 110.70922 * 205.96597 * 16 15 14 35 35 H 1.09004 * 110.70804 * 82.72858 * 16 15 14 36 36 H 1.09005 * 109.47158 * 302.49009 * 19 17 13 37 37 H 1.09002 * 109.46915 * 62.49011 * 19 17 13 38 38 H 1.09004 * 109.47174 * 297.72747 * 20 19 17 39 39 H 1.08998 * 109.47105 * 57.72354 * 20 19 17 40 40 H 1.09008 * 110.01221 * 53.61088 * 21 20 19 41 41 H 1.09007 * 110.48424 * 335.77673 * 22 21 20 42 42 H 1.08998 * 110.49017 * 98.42223 * 22 21 20 43 43 H 1.09002 * 110.75493 * 279.61898 * 23 22 21 44 44 H 1.09004 * 110.91310 * 156.32470 * 23 22 21 45 45 H 1.09000 * 110.48140 * 203.38156 * 24 23 22 46 46 H 1.08992 * 110.60270 * 80.79229 * 24 23 22 47 47 H 1.09002 * 110.03389 * 238.57298 * 25 21 20 48 48 H 1.08994 * 110.03460 * 0.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1666 12 6 2.2453 -3.6621 0.0005 13 7 1.5108 -4.9342 0.0012 14 6 0.7234 -5.0909 1.2426 15 6 0.7461 -6.6117 1.5361 16 6 2.1850 -6.9937 1.1000 17 6 2.4342 -6.0777 -0.1166 18 1 2.2336 -6.6230 -1.0388 19 6 3.8814 -5.5810 -0.1064 20 6 4.8292 -6.7678 -0.2913 21 6 6.2733 -6.2648 -0.3380 22 6 6.5051 -5.4421 -1.6222 23 6 7.9480 -5.8065 -2.0515 24 6 8.0332 -7.3164 -1.7166 25 6 7.2449 -7.4565 -0.3980 26 1 -0.4850 0.8400 -0.0004 27 1 0.9224 -2.5299 -1.9975 28 1 2.8719 -3.6044 0.8905 29 1 2.8720 -3.6044 -0.8895 30 1 1.1893 -4.5398 2.0595 31 1 -0.3001 -4.7494 1.0885 32 1 0.0035 -7.1365 0.9350 33 1 0.5951 -6.8068 2.5979 34 1 2.2338 -8.0430 0.8087 35 1 2.8985 -6.7801 1.8959 36 1 4.0272 -4.8696 -0.9194 37 1 4.0915 -5.0931 0.8454 38 1 4.7121 -7.4596 0.5429 39 1 4.5924 -7.2800 -1.2239 40 1 6.4845 -5.6548 0.5404 41 1 5.7926 -5.7317 -2.3946 42 1 6.4278 -4.3755 -1.4111 43 1 8.6779 -5.2406 -1.4726 44 1 8.0903 -5.6390 -3.1191 45 1 9.0711 -7.6176 -1.5744 46 1 7.5689 -7.9106 -2.5036 47 1 7.9281 -7.4243 0.4507 48 1 6.6876 -8.3931 -0.3943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929853410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:21 Heat of formation + Delta-G solvation = -76.283340 kcal Electronic energy + Delta-G solvation = -23245.002165 eV Core-core repulsion = 20105.286067 eV Total energy + Delta-G solvation = -3139.716098 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.46951 -38.24671 -35.44228 -33.34017 -32.05392 -31.51136 -29.42156 -28.75887 -27.56440 -25.85161 -24.40117 -22.80258 -21.47283 -20.74888 -20.36423 -19.57012 -18.60165 -16.89489 -15.97911 -15.62262 -15.26755 -14.90255 -14.70742 -14.54140 -14.07588 -13.95235 -13.44709 -13.23946 -13.03729 -12.68478 -12.46721 -12.16784 -11.92334 -11.64053 -11.23408 -11.17212 -11.06864 -11.00336 -10.90006 -10.86621 -10.79283 -10.72827 -10.69928 -10.57543 -10.46059 -10.40375 -10.28019 -9.99569 -9.91424 -8.86752 -8.52505 -7.99750 -7.50523 -5.96336 -4.14379 3.28323 3.36563 3.39615 4.37309 4.45428 4.55552 4.58820 4.63793 4.93477 4.97290 5.10335 5.26665 5.28467 5.31660 5.35315 5.36841 5.53303 5.55922 5.59183 5.67042 5.71915 5.76444 5.82154 5.84810 5.89047 5.94914 6.00767 6.03385 6.09633 6.15274 6.19668 6.21466 6.22147 6.25794 6.40639 6.43995 6.47181 6.55767 6.60165 6.73248 6.92581 7.61635 7.75065 7.83333 7.93555 8.26507 8.90202 9.51690 9.68705 11.07879 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.004725 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.744916 B = 5925.028964 C = 7567.828616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.572 4.572 8 H 0.054 0.946 9 C 0.235 3.765 10 H 0.051 0.949 11 O -0.555 6.555 12 C 0.026 3.974 13 N -0.514 5.514 14 C 0.048 3.952 15 C -0.131 4.131 16 C -0.135 4.135 17 C 0.071 3.929 18 H 0.076 0.924 19 C -0.136 4.136 20 C -0.107 4.107 21 C -0.093 4.093 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.121 4.121 26 H 0.259 0.741 27 H 0.342 0.658 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.758 -15.691 -0.240 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.126 4.126 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.611 4.611 8 H 0.072 0.928 9 C 0.177 3.823 10 H 0.069 0.931 11 O -0.356 6.356 12 C -0.101 4.101 13 N -0.237 5.237 14 C -0.080 4.080 15 C -0.169 4.169 16 C -0.174 4.174 17 C -0.037 4.037 18 H 0.094 0.906 19 C -0.174 4.174 20 C -0.145 4.145 21 C -0.111 4.111 22 C -0.158 4.158 23 C -0.164 4.164 24 C -0.162 4.162 25 C -0.159 4.159 26 H 0.069 0.931 27 H 0.185 0.815 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.762 -15.609 -0.198 18.960 hybrid contribution 1.577 1.080 0.429 1.959 sum 12.339 -14.529 0.231 19.063 Atomic orbital electron populations 1.70095 1.05895 1.26177 1.47289 1.25017 0.94649 0.98996 0.93937 0.86661 0.80224 0.84066 0.77679 1.19773 1.20858 1.20946 1.21707 0.93120 0.91706 1.54541 0.92785 1.19338 0.87855 0.88715 0.86390 0.93096 1.86553 1.37758 1.96331 1.14971 1.23264 0.97359 0.90084 0.99428 1.63758 1.22822 1.01684 1.35484 1.22981 0.99658 0.94344 0.91008 1.22718 0.96774 0.96889 1.00546 1.22858 0.96965 0.99463 0.98084 1.22482 0.90932 0.92501 0.97809 0.90627 1.22237 0.94447 0.98067 1.02638 1.21691 0.93493 0.97825 1.01505 1.21791 0.94796 0.96124 0.98398 1.22459 0.96255 0.99986 0.97090 1.22504 0.97340 0.95836 1.00721 1.22349 0.99654 0.96703 0.97495 1.22223 0.97736 0.98430 0.97477 0.93118 0.81545 0.95456 0.91578 0.94045 0.90208 0.91089 0.91572 0.91623 0.91821 0.90691 0.92006 0.92329 0.92083 0.91289 0.91372 0.91534 0.91772 0.91829 0.92179 0.91827 0.92238 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.74 12.84 55.43 0.71 -25.03 16 2 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.57 -15.87 8.76 -34.44 -0.30 -16.17 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.24 6.05 2.74 -27.89 -0.08 5.97 16 10 H 0.05 1.45 7.32 -51.93 -0.38 1.07 16 11 O -0.55 -14.80 12.60 -35.23 -0.44 -15.24 16 12 C 0.03 0.55 3.27 -3.83 -0.01 0.54 16 13 N -0.51 -9.54 5.07 -223.35 -1.13 -10.68 16 14 C 0.05 0.85 5.53 -2.30 -0.01 0.83 16 15 C -0.13 -1.80 7.08 -24.59 -0.17 -1.97 16 16 C -0.14 -1.73 5.53 -24.91 -0.14 -1.87 16 17 C 0.07 1.06 3.49 -66.72 -0.23 0.83 16 18 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 19 C -0.14 -1.86 3.25 -26.73 -0.09 -1.95 16 20 C -0.11 -1.18 4.12 -26.73 -0.11 -1.29 16 21 C -0.09 -0.98 2.93 -89.51 -0.26 -1.24 16 22 C -0.12 -1.30 5.50 -25.07 -0.14 -1.44 16 23 C -0.13 -1.19 6.91 -24.74 -0.17 -1.36 16 24 C -0.12 -1.08 6.83 -25.07 -0.17 -1.25 16 25 C -0.12 -1.11 6.46 -25.62 -0.17 -1.27 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.34 8.24 9.04 45.56 0.41 8.65 16 28 H 0.03 0.57 6.75 -51.93 -0.35 0.22 16 29 H 0.07 1.35 6.33 -51.93 -0.33 1.02 16 30 H 0.04 0.76 7.71 -51.93 -0.40 0.36 16 31 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.80 7.77 -51.93 -0.40 0.40 16 36 H 0.07 1.13 5.59 -51.93 -0.29 0.83 16 37 H 0.06 0.92 6.95 -51.93 -0.36 0.56 16 38 H 0.06 0.61 7.44 -51.93 -0.39 0.23 16 39 H 0.06 0.66 8.00 -51.93 -0.42 0.25 16 40 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 41 H 0.07 0.76 7.76 -51.93 -0.40 0.35 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.55 7.67 -51.93 -0.40 0.15 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -30.07 361.22 -10.91 -40.98 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.32 Total: 7.69 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.15 Total: -19.48 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.42 Total: -35.71 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.44 Total: -15.24 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.07 -10.91 -40.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929853410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.304 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds