Wall clock time and date at job start Tue Mar 31 2020 05:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99960 * 2 1 4 4 H 1.48496 * 109.47115 * 240.00904 * 3 2 1 5 5 H 1.48503 * 109.46651 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46740 * 120.00354 * 3 2 1 7 7 C 1.37878 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00357 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99714 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47362 * 299.99716 * 9 7 2 11 11 O 1.42897 * 109.47461 * 60.00134 * 9 7 2 12 12 C 1.53003 * 109.47376 * 180.02562 * 9 7 2 13 13 N 1.46897 * 109.47506 * 179.97438 * 12 9 7 14 14 C 1.48567 * 110.99724 * 280.01670 * 13 12 9 15 15 C 1.54376 * 104.59084 * 200.95795 * 14 13 12 16 16 C 1.54260 * 105.06405 * 23.85385 * 15 14 13 17 17 C 1.48557 * 111.00180 * 164.59761 * 13 12 9 18 18 H 1.09006 * 110.51177 * 40.21215 * 17 13 12 19 19 C 1.52995 * 110.41061 * 277.82100 * 17 13 12 20 20 C 1.53005 * 109.47167 * 179.60901 * 19 17 13 21 21 C 1.52995 * 109.47093 * 185.12069 * 20 19 17 22 22 C 1.54895 * 110.48540 * 174.99836 * 21 20 19 23 23 C 1.54888 * 102.91705 * 156.52644 * 22 21 20 24 24 C 1.54469 * 104.09901 * 322.30347 * 23 22 21 25 25 C 1.53867 * 106.68674 * 23.33991 * 24 23 22 26 26 H 0.96995 * 120.00269 * 359.97438 * 1 2 3 27 27 H 0.96691 * 114.00306 * 59.99543 * 11 9 7 28 28 H 1.09004 * 109.46910 * 59.99520 * 12 9 7 29 29 H 1.09003 * 109.46496 * 300.00065 * 12 9 7 30 30 H 1.09002 * 110.40897 * 82.18215 * 14 13 12 31 31 H 1.08994 * 110.51138 * 319.78730 * 14 13 12 32 32 H 1.08999 * 110.32729 * 264.95936 * 15 14 13 33 33 H 1.08999 * 110.40768 * 142.79530 * 15 14 13 34 34 H 1.08999 * 110.32550 * 241.10302 * 16 15 14 35 35 H 1.09004 * 110.41122 * 118.93380 * 16 15 14 36 36 H 1.09000 * 109.47463 * 59.61057 * 19 17 13 37 37 H 1.09002 * 109.46992 * 299.60265 * 19 17 13 38 38 H 1.08998 * 109.47069 * 65.11999 * 20 19 17 39 39 H 1.09005 * 109.46874 * 305.12322 * 20 19 17 40 40 H 1.08995 * 110.54039 * 52.39064 * 21 20 19 41 41 H 1.08996 * 110.75608 * 274.93942 * 22 21 20 42 42 H 1.09006 * 110.75543 * 38.12234 * 22 21 20 43 43 H 1.09000 * 110.48471 * 80.82783 * 23 22 21 44 44 H 1.08997 * 110.49024 * 203.47582 * 23 22 21 45 45 H 1.08998 * 109.85867 * 264.10049 * 24 23 22 46 46 H 1.09008 * 110.12093 * 142.72702 * 24 23 22 47 47 H 1.08999 * 110.03459 * 240.87326 * 25 24 23 48 48 H 1.09008 * 110.07443 * 119.46356 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 8 0.4291 -2.5746 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 7 1.5109 -4.9343 0.0001 14 6 1.0363 -5.2743 1.3662 15 6 0.7917 -6.7980 1.3249 16 6 1.6905 -7.3175 0.1840 17 6 2.4025 -6.0640 -0.3682 18 1 3.3808 -5.9461 0.0979 19 6 2.5450 -6.1574 -1.8887 20 6 3.4741 -7.3202 -2.2433 21 6 3.7184 -7.3354 -3.7536 22 6 4.7547 -8.4254 -4.1241 23 6 4.4319 -8.7191 -5.6103 24 6 2.8912 -8.6363 -5.6842 25 6 2.4387 -7.7597 -4.5034 26 1 -0.4850 0.8400 0.0004 27 1 0.9208 -2.5291 -1.9983 28 1 2.8721 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8906 30 1 0.1090 -4.7463 1.5888 31 1 1.7983 -5.0315 2.1067 32 1 -0.2555 -7.0076 1.1072 33 1 1.0797 -7.2549 2.2717 34 1 1.0845 -7.7821 -0.5938 35 1 2.4211 -8.0289 0.5694 36 1 2.9644 -5.2273 -2.2722 37 1 1.5653 -6.3259 -2.3357 38 1 3.0120 -8.2598 -1.9406 39 1 4.4240 -7.1981 -1.7227 40 1 4.0549 -6.3570 -4.0964 41 1 5.7705 -8.0449 -4.0173 42 1 4.6118 -9.3175 -3.5143 43 1 4.8843 -7.9655 -6.2550 44 1 4.7771 -9.7155 -5.8860 45 1 2.4621 -9.6342 -5.5943 46 1 2.5849 -8.1811 -6.6261 47 1 1.7900 -8.3321 -3.8404 48 1 1.9124 -6.8789 -4.8714 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929853413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:23 Heat of formation + Delta-G solvation = -83.230761 kcal Electronic energy + Delta-G solvation = -22940.606652 eV Core-core repulsion = 19800.589291 eV Total energy + Delta-G solvation = -3140.017361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.14268 -38.19245 -35.48348 -33.46895 -32.04765 -31.49564 -29.43468 -28.76601 -27.59602 -25.90177 -24.38804 -22.60955 -21.31734 -20.66777 -19.99605 -19.69047 -19.26961 -16.93641 -16.11894 -15.50319 -15.28365 -14.61913 -14.57809 -14.44070 -14.09108 -13.91475 -13.49511 -13.39109 -13.18357 -12.80305 -12.30326 -12.09818 -11.81275 -11.56803 -11.52829 -11.35671 -11.15283 -11.00900 -10.94716 -10.86474 -10.77245 -10.72082 -10.57014 -10.45976 -10.39356 -10.32944 -10.16950 -10.05939 -9.96965 -8.95488 -8.52224 -8.07324 -7.66002 -5.95429 -4.13989 3.30979 3.36268 3.37835 4.32423 4.44090 4.53681 4.54822 4.69124 4.91752 5.04078 5.17997 5.24900 5.26867 5.32245 5.34902 5.44897 5.50474 5.52711 5.56168 5.66712 5.73074 5.74502 5.77934 5.84037 5.95194 5.97234 6.01078 6.04188 6.08875 6.11110 6.15587 6.21269 6.24677 6.31963 6.37090 6.40311 6.51391 6.55154 6.56240 6.70795 6.89800 7.45127 7.69262 7.81960 7.94758 8.26482 8.90197 9.52121 9.69381 11.08560 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016753 B = 0.003882 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.947428 B = 7210.203642 C = 8243.751295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.575 4.575 8 H 0.053 0.947 9 C 0.243 3.757 10 H 0.051 0.949 11 O -0.552 6.552 12 C 0.020 3.980 13 N -0.491 5.491 14 C 0.035 3.965 15 C -0.124 4.124 16 C -0.116 4.116 17 C 0.059 3.941 18 H 0.041 0.959 19 C -0.100 4.100 20 C -0.108 4.108 21 C -0.091 4.091 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.120 4.120 26 H 0.260 0.740 27 H 0.340 0.660 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.064 0.936 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.924 -18.309 -5.672 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.614 4.614 8 H 0.071 0.929 9 C 0.184 3.816 10 H 0.069 0.931 11 O -0.354 6.354 12 C -0.108 4.108 13 N -0.215 5.215 14 C -0.093 4.093 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.050 4.050 18 H 0.059 0.941 19 C -0.138 4.138 20 C -0.147 4.147 21 C -0.110 4.110 22 C -0.159 4.159 23 C -0.163 4.163 24 C -0.163 4.163 25 C -0.158 4.158 26 H 0.070 0.930 27 H 0.183 0.817 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.814 -18.164 -5.579 19.871 hybrid contribution 1.756 1.052 0.302 2.070 sum 7.570 -17.112 -5.277 19.442 Atomic orbital electron populations 1.70074 1.05886 1.26416 1.47022 1.25016 0.94662 0.98978 0.93919 0.86762 0.79740 0.83359 0.78633 1.20159 1.21190 1.20256 1.21648 0.93046 0.91782 1.54887 0.92925 1.19202 0.87704 0.88265 0.86397 0.93124 1.86566 1.37641 1.96300 1.14869 1.23263 0.97306 0.90742 0.99457 1.65413 1.32971 1.01259 1.21843 1.23075 1.00749 0.94860 0.90638 1.22289 1.00283 0.95722 0.97927 1.22318 0.98250 0.96848 0.97973 1.22663 0.94761 0.91733 0.95855 0.94148 1.21480 1.00028 0.97896 0.94423 1.21621 0.99473 0.98932 0.94625 1.22018 0.95025 0.98756 0.95178 1.22563 0.98728 0.98754 0.95844 1.22384 0.95987 1.01030 0.96903 1.22177 0.95660 0.99816 0.98667 1.22217 0.97491 0.99472 0.96601 0.92988 0.81715 0.95420 0.92067 0.90067 0.94574 0.91356 0.92142 0.91297 0.92271 0.91971 0.91087 0.92052 0.92457 0.90791 0.91908 0.91638 0.91837 0.92073 0.92225 0.92130 0.91712 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.82 12.84 55.43 0.71 -25.11 16 2 C 0.08 2.29 5.40 -17.82 -0.10 2.19 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.58 -16.06 8.76 -34.44 -0.30 -16.36 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.24 6.29 2.94 -27.88 -0.08 6.21 16 10 H 0.05 1.46 7.77 -51.93 -0.40 1.06 16 11 O -0.55 -14.76 12.60 -35.23 -0.44 -15.20 16 12 C 0.02 0.43 4.42 -3.82 -0.02 0.42 16 13 N -0.49 -9.13 4.85 -222.14 -1.08 -10.21 16 14 C 0.03 0.60 6.11 -2.18 -0.01 0.59 16 15 C -0.12 -1.69 7.00 -25.35 -0.18 -1.86 16 16 C -0.12 -1.49 5.71 -25.35 -0.14 -1.63 16 17 C 0.06 0.88 2.30 -66.07 -0.15 0.73 16 18 H 0.04 0.62 8.00 -51.93 -0.42 0.21 16 19 C -0.10 -1.37 4.64 -26.73 -0.12 -1.49 16 20 C -0.11 -1.18 4.35 -26.73 -0.12 -1.29 16 21 C -0.09 -0.93 2.86 -88.96 -0.25 -1.18 16 22 C -0.12 -1.08 6.32 -24.74 -0.16 -1.23 16 23 C -0.13 -1.05 6.85 -24.96 -0.17 -1.22 16 24 C -0.13 -1.10 6.81 -25.51 -0.17 -1.27 16 25 C -0.12 -1.20 5.78 -25.62 -0.15 -1.35 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.34 8.21 9.04 45.56 0.41 8.62 16 28 H 0.03 0.59 7.65 -51.93 -0.40 0.19 16 29 H 0.06 1.27 7.07 -51.93 -0.37 0.90 16 30 H 0.08 1.51 8.00 -51.93 -0.42 1.10 16 31 H 0.04 0.61 7.68 -51.93 -0.40 0.21 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.86 7.82 -51.93 -0.41 0.45 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.93 7.25 -51.93 -0.38 0.56 16 37 H 0.07 1.03 7.71 -51.93 -0.40 0.63 16 38 H 0.06 0.63 7.42 -51.93 -0.39 0.25 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 47 H 0.06 0.65 7.71 -51.93 -0.40 0.25 16 48 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 LS Contribution 368.19 15.07 5.55 5.55 Total: -1.00 -30.21 368.19 -10.98 -41.18 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -8.56 Total: 6.17 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -2.13 Total: -18.77 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.37 Total: -35.31 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.44 Total: -15.20 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.21 -10.98 -41.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929853413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.046 kcal (2) G-P(sol) polarization free energy of solvation -30.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds