Wall clock time and date at job start Tue Mar 31 2020 05:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99960 * 2 1 4 4 H 1.48496 * 109.47115 * 240.00904 * 3 2 1 5 5 H 1.48503 * 109.46651 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46740 * 120.00354 * 3 2 1 7 7 C 1.37878 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00357 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99714 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47362 * 299.99716 * 9 7 2 11 11 O 1.42897 * 109.47461 * 60.00134 * 9 7 2 12 12 C 1.53003 * 109.47376 * 180.02562 * 9 7 2 13 13 N 1.46897 * 109.47506 * 179.97438 * 12 9 7 14 14 C 1.48567 * 110.99724 * 280.01670 * 13 12 9 15 15 C 1.54376 * 104.59084 * 200.95795 * 14 13 12 16 16 C 1.54260 * 105.06405 * 23.85385 * 15 14 13 17 17 C 1.48557 * 111.00180 * 164.59761 * 13 12 9 18 18 H 1.09006 * 110.51177 * 40.21215 * 17 13 12 19 19 C 1.52995 * 110.41061 * 277.82100 * 17 13 12 20 20 C 1.53005 * 109.47167 * 179.60901 * 19 17 13 21 21 C 1.52995 * 109.47093 * 185.12069 * 20 19 17 22 22 C 1.54895 * 110.48540 * 174.99836 * 21 20 19 23 23 C 1.54888 * 102.91705 * 156.52644 * 22 21 20 24 24 C 1.54469 * 104.09901 * 322.30347 * 23 22 21 25 25 C 1.53867 * 106.68674 * 23.33991 * 24 23 22 26 26 H 0.96995 * 120.00269 * 359.97438 * 1 2 3 27 27 H 0.96691 * 114.00306 * 59.99543 * 11 9 7 28 28 H 1.09004 * 109.46910 * 59.99520 * 12 9 7 29 29 H 1.09003 * 109.46496 * 300.00065 * 12 9 7 30 30 H 1.09002 * 110.40897 * 82.18215 * 14 13 12 31 31 H 1.08994 * 110.51138 * 319.78730 * 14 13 12 32 32 H 1.08999 * 110.32729 * 264.95936 * 15 14 13 33 33 H 1.08999 * 110.40768 * 142.79530 * 15 14 13 34 34 H 1.08999 * 110.32550 * 241.10302 * 16 15 14 35 35 H 1.09004 * 110.41122 * 118.93380 * 16 15 14 36 36 H 1.09000 * 109.47463 * 59.61057 * 19 17 13 37 37 H 1.09002 * 109.46992 * 299.60265 * 19 17 13 38 38 H 1.08998 * 109.47069 * 65.11999 * 20 19 17 39 39 H 1.09005 * 109.46874 * 305.12322 * 20 19 17 40 40 H 1.08995 * 110.54039 * 52.39064 * 21 20 19 41 41 H 1.08996 * 110.75608 * 274.93942 * 22 21 20 42 42 H 1.09006 * 110.75543 * 38.12234 * 22 21 20 43 43 H 1.09000 * 110.48471 * 80.82783 * 23 22 21 44 44 H 1.08997 * 110.49024 * 203.47582 * 23 22 21 45 45 H 1.08998 * 109.85867 * 264.10049 * 24 23 22 46 46 H 1.09008 * 110.12093 * 142.72702 * 24 23 22 47 47 H 1.08999 * 110.03459 * 240.87326 * 25 24 23 48 48 H 1.09008 * 110.07443 * 119.46356 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 8 0.4291 -2.5746 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 7 1.5109 -4.9343 0.0001 14 6 1.0363 -5.2743 1.3662 15 6 0.7917 -6.7980 1.3249 16 6 1.6905 -7.3175 0.1840 17 6 2.4025 -6.0640 -0.3682 18 1 3.3808 -5.9461 0.0979 19 6 2.5450 -6.1574 -1.8887 20 6 3.4741 -7.3202 -2.2433 21 6 3.7184 -7.3354 -3.7536 22 6 4.7547 -8.4254 -4.1241 23 6 4.4319 -8.7191 -5.6103 24 6 2.8912 -8.6363 -5.6842 25 6 2.4387 -7.7597 -4.5034 26 1 -0.4850 0.8400 0.0004 27 1 0.9208 -2.5291 -1.9983 28 1 2.8721 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8906 30 1 0.1090 -4.7463 1.5888 31 1 1.7983 -5.0315 2.1067 32 1 -0.2555 -7.0076 1.1072 33 1 1.0797 -7.2549 2.2717 34 1 1.0845 -7.7821 -0.5938 35 1 2.4211 -8.0289 0.5694 36 1 2.9644 -5.2273 -2.2722 37 1 1.5653 -6.3259 -2.3357 38 1 3.0120 -8.2598 -1.9406 39 1 4.4240 -7.1981 -1.7227 40 1 4.0549 -6.3570 -4.0964 41 1 5.7705 -8.0449 -4.0173 42 1 4.6118 -9.3175 -3.5143 43 1 4.8843 -7.9655 -6.2550 44 1 4.7771 -9.7155 -5.8860 45 1 2.4621 -9.6342 -5.5943 46 1 2.5849 -8.1811 -6.6261 47 1 1.7900 -8.3321 -3.8404 48 1 1.9124 -6.8789 -4.8714 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929853413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:23 Heat of formation + Delta-G solvation = -101.920338 kcal Electronic energy + Delta-G solvation = -22941.417093 eV Core-core repulsion = 19800.589291 eV Total energy + Delta-G solvation = -3140.827802 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36496 -39.10672 -37.45353 -34.51109 -34.23166 -33.00037 -30.43557 -29.52320 -29.46280 -26.94343 -26.25157 -23.64435 -22.96729 -21.50522 -21.34053 -20.84638 -20.22404 -19.01907 -17.08161 -16.72040 -16.65497 -16.42009 -16.14974 -15.72629 -15.53314 -15.29260 -14.94303 -14.44545 -14.17637 -14.09707 -13.80549 -13.38648 -13.28241 -13.05023 -12.79698 -12.66149 -12.56711 -12.48918 -12.12040 -12.05081 -12.02587 -11.92172 -11.84679 -11.55594 -11.43716 -11.37305 -11.20925 -11.19185 -11.15002 -10.97454 -10.70407 -10.09822 -9.21682 -8.13449 -6.40495 1.39012 1.41237 1.49449 2.37638 3.09670 3.13532 3.70608 3.73842 3.80431 3.85130 3.92550 4.10459 4.22939 4.29697 4.37432 4.42855 4.47266 4.52714 4.61184 4.63120 4.65509 4.73826 4.78203 4.81119 4.83136 4.89474 4.98774 5.00557 5.02766 5.06206 5.09474 5.15552 5.17328 5.27299 5.31705 5.33263 5.37666 5.42959 5.50690 5.57708 5.58788 5.64214 5.74266 6.01727 6.16905 6.26137 6.73369 7.33824 7.61624 8.90863 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016753 B = 0.003882 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.947428 B = 7210.203642 C = 8243.751295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.591 4.591 8 H 0.058 0.942 9 C 0.244 3.756 10 H 0.012 0.988 11 O -0.568 6.568 12 C 0.041 3.959 13 N -0.510 5.510 14 C 0.029 3.971 15 C -0.116 4.116 16 C -0.108 4.108 17 C 0.057 3.943 18 H 0.041 0.959 19 C -0.093 4.093 20 C -0.098 4.098 21 C -0.093 4.093 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.122 4.122 26 H 0.261 0.739 27 H 0.350 0.650 28 H 0.024 0.976 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.596 -19.956 -5.957 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.630 4.630 8 H 0.076 0.924 9 C 0.186 3.814 10 H 0.030 0.970 11 O -0.371 6.371 12 C -0.088 4.088 13 N -0.234 5.234 14 C -0.100 4.100 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.051 4.051 18 H 0.059 0.941 19 C -0.131 4.131 20 C -0.136 4.136 21 C -0.111 4.111 22 C -0.155 4.155 23 C -0.162 4.162 24 C -0.163 4.163 25 C -0.159 4.159 26 H 0.070 0.930 27 H 0.194 0.806 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.503 -19.830 -5.869 21.999 hybrid contribution 1.187 1.553 0.392 1.993 sum 8.690 -18.278 -5.476 20.966 Atomic orbital electron populations 1.70225 1.07732 1.27428 1.48280 1.25920 0.95486 1.02955 0.93305 0.85600 0.78372 0.78378 0.79147 1.19080 1.20878 1.19319 1.22040 0.93453 0.92932 1.54527 0.92420 1.19037 0.87621 0.89993 0.84766 0.97020 1.86504 1.38550 1.96468 1.15577 1.22809 0.95825 0.90778 0.99344 1.65319 1.33820 1.01328 1.22900 1.23106 0.99375 0.97519 0.89953 1.22268 1.00774 0.92693 0.99673 1.22318 0.98533 0.96019 0.97721 1.22787 0.94350 0.91291 0.96697 0.94073 1.21412 1.00043 0.98265 0.93385 1.21535 0.98913 0.98032 0.95093 1.21998 0.95665 0.98755 0.94713 1.22545 0.98330 0.98379 0.96266 1.22394 0.95507 1.01762 0.96547 1.22183 0.96138 0.99931 0.98036 1.22219 0.97347 0.99195 0.97185 0.92972 0.80646 0.95782 0.91741 0.92832 0.94645 0.91199 0.89620 0.90591 0.89486 0.94015 0.92167 0.90698 0.92027 0.92133 0.91552 0.90829 0.92006 0.90764 0.91367 0.92118 0.91639 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.43 12.84 21.45 0.28 -55.16 16 2 C 0.03 1.48 5.40 84.66 0.46 1.94 16 3 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.59 -33.59 8.76 25.60 0.22 -33.37 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.24 13.13 2.94 29.85 0.09 13.22 16 10 H 0.01 0.73 7.77 -2.39 -0.02 0.71 16 11 O -0.57 -31.45 12.60 -148.98 -1.88 -33.32 16 12 C 0.04 1.78 4.42 86.30 0.38 2.16 16 13 N -0.51 -19.14 4.85 -856.71 -4.16 -23.30 16 14 C 0.03 0.99 6.11 86.45 0.53 1.52 16 15 C -0.12 -2.94 7.00 31.49 0.22 -2.72 16 16 C -0.11 -2.47 5.71 31.49 0.18 -2.29 16 17 C 0.06 1.63 2.30 45.06 0.10 1.74 16 18 H 0.04 1.20 8.00 -2.38 -0.02 1.18 16 19 C -0.09 -2.47 4.64 30.59 0.14 -2.33 16 20 C -0.10 -1.93 4.35 30.59 0.13 -1.80 16 21 C -0.09 -1.77 2.86 -9.72 -0.03 -1.79 16 22 C -0.12 -1.82 6.32 31.89 0.20 -1.62 16 23 C -0.12 -1.82 6.85 31.74 0.22 -1.60 16 24 C -0.13 -1.99 6.81 31.39 0.21 -1.78 16 25 C -0.12 -2.31 5.78 31.32 0.18 -2.13 16 26 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 27 H 0.35 17.42 9.04 -74.06 -0.67 16.76 16 28 H 0.02 1.04 7.65 -2.39 -0.02 1.02 16 29 H 0.06 2.71 7.07 -2.39 -0.02 2.69 16 30 H 0.05 2.11 8.00 -2.39 -0.02 2.09 16 31 H 0.04 1.21 7.68 -2.39 -0.02 1.19 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 1.66 7.82 -2.39 -0.02 1.64 16 35 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.04 1.26 7.25 -2.39 -0.02 1.24 16 37 H 0.06 1.72 7.71 -2.39 -0.02 1.70 16 38 H 0.07 1.31 7.42 -2.39 -0.02 1.29 16 39 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 1.04 8.06 -2.38 -0.02 1.02 16 43 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.06 1.22 7.71 -2.39 -0.02 1.20 16 48 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -65.98 368.19 -0.26 -66.24 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.22 Total: 30.19 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 3.24 Total: -30.85 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -3.88 Total: -78.45 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.88 Total: -33.32 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -65.98 -0.26 -66.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929853413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.681 kcal (2) G-P(sol) polarization free energy of solvation -65.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds