Wall clock time and date at job start Tue Mar 31 2020 05:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00049 * 2 1 4 4 H 1.48498 * 109.46908 * 239.99804 * 3 2 1 5 5 H 1.48498 * 109.47410 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46795 * 119.99845 * 3 2 1 7 7 C 1.37876 * 119.99559 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99637 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00290 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.46902 * 300.00150 * 9 7 2 11 11 O 1.42905 * 109.46848 * 59.99794 * 9 7 2 12 12 C 1.52996 * 109.47336 * 179.97438 * 9 7 2 13 13 N 1.46896 * 109.47285 * 180.02562 * 12 9 7 14 14 C 1.46900 * 110.99993 * 177.80219 * 13 12 9 15 15 C 1.53006 * 109.46879 * 118.31677 * 14 13 12 16 16 C 1.54269 * 110.48513 * 186.46623 * 15 14 13 17 17 C 1.53877 * 106.60110 * 142.28867 * 16 15 14 18 18 C 1.54269 * 106.63903 * 359.97170 * 17 16 15 19 19 C 1.54890 * 110.48495 * 301.23570 * 15 14 13 20 20 C 1.52992 * 109.47456 * 238.31318 * 14 13 12 21 21 C 1.54268 * 110.03810 * 171.29825 * 20 14 13 22 22 C 1.54880 * 104.20048 * 217.10934 * 21 20 14 23 23 C 1.54891 * 102.74857 * 37.93959 * 22 21 20 24 24 C 1.53880 * 110.03177 * 54.13491 * 20 14 13 25 25 H 0.97004 * 119.99678 * 359.97438 * 1 2 3 26 26 H 0.96704 * 113.99387 * 60.00460 * 11 9 7 27 27 H 1.09000 * 109.46801 * 60.00105 * 12 9 7 28 28 H 1.09004 * 109.47106 * 300.00152 * 12 9 7 29 29 H 1.00900 * 111.00118 * 53.84657 * 13 12 9 30 30 H 1.09006 * 109.47352 * 358.31818 * 14 13 12 31 31 H 1.09000 * 110.54134 * 63.85170 * 15 14 13 32 32 H 1.09000 * 110.03297 * 22.99949 * 16 15 14 33 33 H 1.09007 * 110.06987 * 261.59524 * 16 15 14 34 34 H 1.08995 * 110.03287 * 119.27855 * 17 16 15 35 35 H 1.08999 * 110.03094 * 240.66791 * 17 16 15 36 36 H 1.08997 * 110.48453 * 95.08935 * 18 17 16 37 37 H 1.08992 * 110.49008 * 217.73949 * 18 17 16 38 38 H 1.08998 * 110.75862 * 321.69896 * 19 15 14 39 39 H 1.09001 * 110.75125 * 84.88357 * 19 15 14 40 40 H 1.08996 * 110.02201 * 292.74669 * 20 14 13 41 41 H 1.09003 * 110.47991 * 335.78968 * 21 20 14 42 42 H 1.08999 * 110.48216 * 98.42722 * 21 20 14 43 43 H 1.08998 * 110.75941 * 279.62903 * 22 21 20 44 44 H 1.08998 * 110.91822 * 156.33186 * 22 21 20 45 45 H 1.09002 * 110.48873 * 203.37747 * 23 22 21 46 46 H 1.09001 * 110.59566 * 80.79364 * 23 22 21 47 47 H 1.09001 * 110.03295 * 238.57381 * 24 20 14 48 48 H 1.09005 * 110.03159 * 359.94902 * 24 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8896 11 8 0.4289 -2.5745 -1.1670 12 6 2.2451 -3.6621 -0.0018 13 7 1.5105 -4.9342 -0.0024 14 6 2.4341 -6.0754 -0.0563 15 6 2.2658 -6.9275 1.2033 16 6 3.3336 -8.0399 1.2493 17 6 3.7549 -8.1844 2.7222 18 6 2.9294 -7.1545 3.5208 19 6 2.5435 -6.0819 2.4710 20 6 2.1248 -6.9240 -1.2911 21 6 3.2167 -7.9969 -1.4822 22 6 3.3939 -8.0894 -3.0180 23 6 3.2512 -6.6142 -3.4680 24 6 2.1467 -6.0449 -2.5539 25 1 -0.4850 0.8401 0.0004 26 1 0.9208 -2.5290 -1.9984 27 1 2.8724 -3.6048 0.8877 28 1 2.8711 -3.6040 -0.8923 29 1 0.8481 -4.9690 -0.7628 30 1 3.4596 -5.7104 -0.1137 31 1 1.2650 -7.3575 1.2433 32 1 4.1930 -7.7579 0.6410 33 1 2.9124 -8.9780 0.8877 34 1 3.5373 -9.1922 3.0757 35 1 4.8189 -7.9732 2.8286 36 1 2.0358 -7.6210 3.9354 37 1 3.5335 -6.7135 4.3135 38 1 3.3707 -5.3925 2.3019 39 1 1.6484 -5.5409 2.7781 40 1 1.1493 -7.3982 -1.1833 41 1 4.1471 -7.6826 -1.0090 42 1 2.8863 -8.9537 -1.0779 43 1 2.6114 -8.7056 -3.4608 44 1 4.3799 -8.4775 -3.2734 45 1 2.9460 -6.5619 -4.5131 46 1 4.1866 -6.0751 -3.3174 47 1 1.1821 -6.0931 -3.0592 48 1 2.3769 -5.0134 -2.2868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930219336.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:19 Heat of formation + Delta-G solvation = -85.616864 kcal Electronic energy + Delta-G solvation = -23692.386433 eV Core-core repulsion = 20552.265603 eV Total energy + Delta-G solvation = -3140.120830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.69236 -37.13375 -36.25729 -34.03541 -32.08457 -30.67867 -29.01886 -28.38729 -27.43199 -27.31867 -24.43046 -22.53836 -20.94966 -20.57823 -20.02571 -19.32626 -19.27444 -16.93022 -16.06029 -15.74248 -15.59889 -14.67434 -14.58352 -14.31113 -14.11266 -13.90574 -13.50365 -13.17739 -12.97768 -12.86540 -12.49817 -11.95041 -11.88643 -11.31028 -11.18609 -11.11931 -11.08631 -10.98508 -10.86384 -10.82467 -10.77421 -10.68984 -10.60999 -10.47765 -10.35200 -10.26534 -10.10240 -10.02397 -9.94690 -8.94988 -8.54370 -8.11668 -7.63003 -5.97780 -4.15959 3.30032 3.35486 3.37099 4.37539 4.52989 4.60311 4.66551 4.77573 4.86474 4.96713 5.11571 5.28278 5.30046 5.44906 5.50727 5.56333 5.64828 5.66757 5.70317 5.76900 5.82649 5.84386 5.84497 5.86861 5.95246 5.97243 6.06409 6.06862 6.11842 6.16772 6.19584 6.25710 6.35773 6.39084 6.45237 6.47513 6.48488 6.56254 6.65836 6.73286 6.95755 7.66968 7.79504 7.94534 8.09750 8.29281 8.87586 9.40535 9.61067 11.06384 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.004887 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.352681 B = 5728.018226 C = 6922.515042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.573 4.573 8 H 0.053 0.947 9 C 0.232 3.768 10 H 0.062 0.938 11 O -0.565 6.565 12 C 0.039 3.961 13 N -0.682 5.682 14 C 0.100 3.900 15 C -0.073 4.073 16 C -0.125 4.125 17 C -0.125 4.125 18 C -0.128 4.128 19 C -0.105 4.105 20 C -0.105 4.105 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.129 4.129 25 H 0.260 0.740 26 H 0.339 0.661 27 H 0.062 0.938 28 H 0.014 0.986 29 H 0.344 0.656 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.990 -17.435 -1.341 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.611 4.611 8 H 0.071 0.929 9 C 0.174 3.826 10 H 0.080 0.920 11 O -0.366 6.366 12 C -0.090 4.090 13 N -0.313 5.313 14 C -0.010 4.010 15 C -0.093 4.093 16 C -0.163 4.163 17 C -0.163 4.163 18 C -0.166 4.166 19 C -0.143 4.143 20 C -0.124 4.124 21 C -0.156 4.156 22 C -0.165 4.165 23 C -0.160 4.160 24 C -0.166 4.166 25 H 0.070 0.930 26 H 0.182 0.818 27 H 0.081 0.919 28 H 0.032 0.968 29 H 0.164 0.836 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.255 -17.367 -0.185 18.460 hybrid contribution 1.316 1.097 -1.263 2.129 sum 7.572 -16.271 -1.449 18.005 Atomic orbital electron populations 1.70076 1.05892 1.26441 1.46976 1.25021 0.94665 0.99019 0.93880 0.86759 0.79739 0.83338 0.78643 1.20242 1.21200 1.20172 1.21600 0.93040 0.91662 1.54812 0.92885 1.19413 0.88154 0.88968 0.86065 0.91979 1.86595 1.38519 1.96245 1.15280 1.22903 0.97178 0.90106 0.98786 1.60470 1.17557 1.01276 1.52021 1.21692 0.95784 0.91099 0.92444 1.21949 0.98248 0.94344 0.94712 1.22520 0.99142 0.98685 0.95977 1.22154 0.99563 0.98805 0.95750 1.22409 0.99306 0.96866 0.97990 1.22370 1.01553 0.96597 0.93761 1.22248 0.99257 0.96052 0.94861 1.22685 0.98984 0.98551 0.95417 1.22531 1.00940 0.96698 0.96310 1.22324 0.98982 0.95744 0.98974 1.22298 0.98918 0.99976 0.95454 0.92987 0.81770 0.91934 0.96757 0.83577 0.92654 0.91115 0.91468 0.92213 0.92601 0.92439 0.92111 0.92293 0.92100 0.90896 0.90900 0.91080 0.91692 0.91873 0.92092 0.92083 0.91949 0.91791 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.52 12.84 55.43 0.71 -24.81 16 2 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.57 -15.72 8.76 -34.44 -0.30 -16.03 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.23 5.82 3.10 -27.89 -0.09 5.74 16 10 H 0.06 1.77 8.14 -51.93 -0.42 1.35 16 11 O -0.56 -14.22 12.03 -35.23 -0.42 -14.64 16 12 C 0.04 0.79 4.69 -3.83 -0.02 0.78 16 13 N -0.68 -11.81 5.68 -106.73 -0.61 -12.42 16 14 C 0.10 1.41 1.26 -67.71 -0.09 1.33 16 15 C -0.07 -0.95 2.61 -88.96 -0.23 -1.19 16 16 C -0.13 -1.36 4.62 -25.61 -0.12 -1.48 16 17 C -0.13 -1.31 6.80 -25.61 -0.17 -1.49 16 18 C -0.13 -1.49 6.84 -25.03 -0.17 -1.67 16 19 C -0.11 -1.48 5.95 -24.69 -0.15 -1.62 16 20 C -0.10 -1.28 2.42 -89.50 -0.22 -1.50 16 21 C -0.12 -1.23 4.54 -25.08 -0.11 -1.34 16 22 C -0.13 -1.25 6.91 -24.74 -0.17 -1.42 16 23 C -0.12 -1.36 6.83 -25.08 -0.17 -1.53 16 24 C -0.13 -1.64 5.53 -25.61 -0.14 -1.78 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.34 7.64 9.04 45.56 0.41 8.05 16 27 H 0.06 1.29 7.89 -51.93 -0.41 0.88 16 28 H 0.01 0.29 7.05 -51.93 -0.37 -0.08 16 29 H 0.34 6.15 6.46 -39.29 -0.25 5.90 16 30 H 0.06 0.84 7.29 -51.93 -0.38 0.46 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.72 5.49 -51.93 -0.29 0.44 16 33 H 0.06 0.60 6.96 -51.93 -0.36 0.23 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.92 7.81 -51.93 -0.41 0.51 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.75 5.68 -51.93 -0.29 0.46 16 42 H 0.06 0.62 6.87 -51.93 -0.36 0.26 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.07 1.05 5.69 -51.93 -0.30 0.75 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -28.75 355.78 -10.26 -39.00 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -8.03 Total: 12.31 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -2.25 Total: -21.04 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.11 Total: -37.23 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.42 Total: -14.64 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.75 -10.26 -39.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930219336.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.614 kcal (2) G-P(sol) polarization free energy of solvation -28.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds