Wall clock time and date at job start Tue Mar 31 2020 05:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00342 * 2 1 4 4 H 1.48506 * 109.47056 * 269.72100 * 3 2 1 5 5 H 1.48495 * 109.47460 * 29.72090 * 3 2 1 6 6 H 1.48508 * 109.46981 * 149.72462 * 3 2 1 7 7 C 1.37880 * 119.99127 * 179.72264 * 2 1 3 8 8 H 1.08000 * 119.99250 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00460 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47603 * 299.99671 * 9 7 2 11 11 O 1.42901 * 109.47335 * 60.00060 * 9 7 2 12 12 C 1.53006 * 109.47337 * 180.02562 * 9 7 2 13 13 N 1.46899 * 109.47331 * 180.66445 * 12 9 7 14 14 C 1.46839 * 110.99879 * 169.66649 * 13 12 9 15 15 C 1.53044 * 109.52277 * 185.83863 * 14 13 12 16 16 C 1.53123 * 109.27785 * 300.82123 * 15 14 13 17 17 C 1.53118 * 109.15977 * 57.65524 * 16 15 14 18 18 H 1.08998 * 109.53777 * 62.30225 * 17 16 15 19 19 C 1.52998 * 109.50488 * 182.40495 * 17 16 15 20 20 C 1.52998 * 109.46818 * 299.80130 * 19 17 16 21 21 C 1.53006 * 109.47263 * 179.97438 * 20 19 17 22 22 C 1.52999 * 109.46957 * 59.99993 * 21 20 19 23 23 C 1.53006 * 109.47280 * 299.99932 * 22 21 20 24 24 C 1.52999 * 109.47187 * 179.80254 * 19 17 16 25 25 C 1.46846 * 110.99898 * 293.87677 * 13 12 9 26 26 H 0.97004 * 119.99643 * 0.27937 * 1 2 3 27 27 H 0.96697 * 113.99849 * 60.00179 * 11 9 7 28 28 H 1.09001 * 109.46776 * 300.66788 * 12 9 7 29 29 H 1.08997 * 109.46900 * 60.66567 * 12 9 7 30 30 H 1.08995 * 109.46632 * 305.85330 * 14 13 12 31 31 H 1.09002 * 109.46494 * 65.82680 * 14 13 12 32 32 H 1.08996 * 109.50238 * 180.88177 * 15 14 13 33 33 H 1.08996 * 109.53444 * 60.77972 * 15 14 13 34 34 H 1.09002 * 109.52289 * 297.75091 * 16 15 14 35 35 H 1.08996 * 109.52236 * 177.55715 * 16 15 14 36 36 H 1.09001 * 109.47310 * 59.79881 * 19 17 16 37 37 H 1.09000 * 109.47296 * 299.99518 * 20 19 17 38 38 H 1.09004 * 109.47196 * 60.00266 * 20 19 17 39 39 H 1.09000 * 109.46578 * 299.99966 * 21 20 19 40 40 H 1.08998 * 109.47522 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.46802 * 180.02562 * 22 21 20 42 42 H 1.08992 * 109.47073 * 60.00053 * 22 21 20 43 43 H 1.09000 * 109.47349 * 300.00696 * 23 22 21 44 44 H 1.08991 * 109.47144 * 179.97438 * 23 22 21 45 45 H 1.08993 * 109.47305 * 299.99555 * 24 19 17 46 46 H 1.09000 * 109.47498 * 60.00132 * 24 19 17 47 47 H 1.08995 * 109.46484 * 294.17955 * 25 13 12 48 48 H 1.09005 * 109.46445 * 54.14662 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5027 2.0429 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4416 0.7059 7 6 2.0044 -1.1942 0.0058 8 1 3.0844 -1.1942 0.0062 9 6 1.2508 -2.4991 0.0115 10 1 0.6238 -2.5528 0.9015 11 8 0.4297 -2.5802 -1.1552 12 6 2.2450 -3.6622 0.0179 13 7 1.5105 -4.9343 0.0074 14 6 2.4176 -6.0637 -0.2328 15 6 1.6034 -7.3510 -0.3819 16 6 0.7919 -7.5866 0.8951 17 6 -0.1091 -6.3748 1.1487 18 1 -0.8134 -6.2653 0.3240 19 6 -0.8796 -6.5756 2.4552 20 6 -1.7430 -7.8343 2.3497 21 6 -2.5131 -8.0356 3.6564 22 6 -3.4094 -6.8223 3.9122 23 6 -2.5460 -5.5635 4.0178 24 6 -1.7760 -5.3622 2.7103 25 6 0.7548 -5.1159 1.2534 26 1 -0.4850 0.8401 -0.0041 27 1 0.9222 -2.5388 -1.9864 28 1 2.8802 -3.6020 -0.8659 29 1 2.8630 -3.6069 0.9140 30 1 2.9856 -5.8856 -1.1459 31 1 3.1040 -6.1636 0.6081 32 1 2.2780 -8.1915 -0.5446 33 1 0.9265 -7.2578 -1.2311 34 1 1.4699 -7.7192 1.7383 35 1 0.1774 -8.4790 0.7767 36 1 -0.1748 -6.6865 3.2793 37 1 -2.4478 -7.7235 1.5257 38 1 -1.1044 -8.6988 2.1679 39 1 -1.8079 -8.1466 4.4802 40 1 -3.1278 -8.9326 3.5815 41 1 -3.9576 -6.9655 4.8434 42 1 -4.1143 -6.7113 3.0884 43 1 -1.8408 -5.6746 4.8415 44 1 -3.1845 -4.6992 4.1995 45 1 -1.1609 -4.4656 2.7855 46 1 -2.4808 -5.2514 1.8863 47 1 1.4489 -5.2201 2.0873 48 1 0.1150 -4.2492 1.4197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931071830.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:50 Heat of formation + Delta-G solvation = -88.364636 kcal Electronic energy + Delta-G solvation = -23640.977303 eV Core-core repulsion = 20500.737320 eV Total energy + Delta-G solvation = -3140.239982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.61200 -37.70327 -35.55868 -33.27505 -32.04107 -31.81900 -30.64719 -28.37173 -28.04809 -25.15262 -23.51470 -23.19788 -21.90564 -20.86146 -20.02851 -19.63557 -19.23804 -16.98402 -15.69933 -15.10388 -14.68921 -14.60931 -14.42649 -14.25870 -14.13557 -13.90933 -13.61574 -13.17354 -13.10888 -12.98117 -12.63230 -12.33224 -12.08924 -11.84034 -11.71286 -11.30662 -11.10611 -11.04189 -10.90620 -10.80704 -10.76973 -10.63599 -10.56354 -10.39187 -10.22676 -10.16442 -10.00316 -9.66068 -9.52404 -8.88949 -8.52900 -8.03165 -7.52927 -5.96896 -4.14982 3.29255 3.36238 3.38739 4.34670 4.50145 4.71888 4.77821 4.84227 5.08309 5.14863 5.17539 5.27224 5.30751 5.41416 5.53354 5.57695 5.59875 5.61543 5.67910 5.73794 5.81492 5.88995 5.90001 5.98167 6.05852 6.07253 6.12282 6.16392 6.20111 6.22960 6.23868 6.28698 6.34118 6.39828 6.44854 6.47294 6.53864 6.63990 6.70634 6.79599 6.88160 7.65996 7.74599 7.84213 7.95044 8.25473 8.89119 9.50955 9.67787 11.07139 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017525 B = 0.004669 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.367320 B = 5995.625326 C = 7228.917227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.574 4.574 8 H 0.053 0.947 9 C 0.239 3.761 10 H 0.053 0.947 11 O -0.553 6.553 12 C 0.031 3.969 13 N -0.526 5.526 14 C 0.054 3.946 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.078 4.078 18 H 0.078 0.922 19 C -0.078 4.078 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.118 4.118 25 C 0.062 3.938 26 H 0.260 0.740 27 H 0.342 0.658 28 H 0.061 0.939 29 H 0.023 0.977 30 H 0.067 0.933 31 H 0.021 0.979 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.019 0.981 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 -16.268 5.193 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.613 4.613 8 H 0.072 0.928 9 C 0.181 3.819 10 H 0.071 0.929 11 O -0.355 6.355 12 C -0.097 4.097 13 N -0.250 5.250 14 C -0.074 4.074 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.096 4.096 18 H 0.097 0.903 19 C -0.097 4.097 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.066 4.066 26 H 0.069 0.931 27 H 0.185 0.815 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.037 0.963 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.153 -16.184 5.279 17.313 hybrid contribution 1.703 1.034 0.341 2.021 sum -1.450 -15.151 5.621 16.225 Atomic orbital electron populations 1.70087 1.05873 1.26306 1.47124 1.25008 0.94662 0.98976 0.93897 0.86705 0.79961 0.83669 0.78209 1.20525 1.21132 1.19921 1.21676 0.93123 0.91729 1.54768 0.92839 1.19293 0.87757 0.88444 0.86455 0.92924 1.86554 1.37665 1.96309 1.14938 1.23062 0.97260 0.90056 0.99276 1.61902 1.26542 1.01643 1.34904 1.22065 0.94057 0.91566 0.99751 1.21563 0.98841 0.96366 0.98483 1.21658 0.98072 0.97885 0.97505 1.21208 0.96817 0.94262 0.97354 0.90324 1.21135 0.96434 0.94781 0.97311 1.21621 0.98444 0.97662 0.97386 1.21528 0.98476 0.97562 0.98005 1.21538 0.97927 0.95091 1.01112 1.21544 0.98623 0.97379 0.98111 1.21656 0.98591 0.98070 0.97251 1.22162 0.96306 0.98334 0.89750 0.93051 0.81535 0.92011 0.95874 0.91497 0.96110 0.92422 0.91222 0.92822 0.92116 0.91774 0.91995 0.92065 0.92344 0.92534 0.92616 0.92078 0.92361 0.92134 0.91211 0.91709 0.96274 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.52 12.84 55.43 0.71 -24.81 16 2 C 0.08 2.27 5.40 -17.82 -0.10 2.18 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.57 -15.91 8.76 -34.44 -0.30 -16.21 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.24 6.10 2.69 -27.88 -0.08 6.02 16 10 H 0.05 1.48 6.47 -51.93 -0.34 1.14 16 11 O -0.55 -14.59 12.58 -35.23 -0.44 -15.03 16 12 C 0.03 0.66 4.57 -3.82 -0.02 0.64 16 13 N -0.53 -9.78 4.51 -234.67 -1.06 -10.83 16 14 C 0.05 0.83 5.46 -3.83 -0.02 0.81 16 15 C -0.11 -1.49 6.09 -26.65 -0.16 -1.66 16 16 C -0.11 -1.41 4.86 -26.61 -0.13 -1.54 16 17 C -0.08 -1.10 1.94 -90.54 -0.18 -1.28 16 18 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 19 C -0.08 -0.97 1.78 -90.62 -0.16 -1.13 16 20 C -0.11 -1.21 4.86 -26.73 -0.13 -1.34 16 21 C -0.12 -1.15 5.92 -26.73 -0.16 -1.30 16 22 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 23 C -0.12 -1.38 5.93 -26.70 -0.16 -1.53 16 24 C -0.12 -1.59 4.85 -26.70 -0.13 -1.72 16 25 C 0.06 1.09 4.20 -3.83 -0.02 1.07 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.34 8.17 9.04 45.56 0.41 8.58 16 28 H 0.06 1.28 7.98 -51.93 -0.41 0.86 16 29 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.07 1.01 8.01 -51.93 -0.42 0.59 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.67 6.58 -51.93 -0.34 0.33 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.61 6.49 -51.93 -0.34 0.27 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.07 1.07 6.45 -51.93 -0.34 0.74 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.09 1.74 4.58 -51.93 -0.24 1.50 16 LS Contribution 355.92 15.07 5.36 5.36 Total: -1.00 -29.59 355.92 -10.65 -40.24 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -8.31 Total: 7.18 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.89 Total: -18.36 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.35 Total: -35.64 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.44 Total: -15.03 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.59 -10.65 -40.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931071830.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.128 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds