Wall clock time and date at job start Tue Mar 31 2020 05:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47280 * 2 1 4 4 C 1.53003 * 109.47356 * 240.00217 * 2 1 3 5 5 C 1.52997 * 109.47433 * 119.99818 * 2 1 3 6 6 N 1.46499 * 109.47106 * 57.73801 * 5 2 1 7 7 C 1.46506 * 120.00400 * 275.30429 * 6 5 2 8 8 C 1.50701 * 109.46706 * 269.99808 * 7 6 5 9 9 H 1.07997 * 120.00118 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99489 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00236 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99714 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47193 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47319 * 119.99742 * 12 10 8 15 15 H 1.48507 * 109.46695 * 239.99667 * 12 10 8 16 16 C 1.34776 * 119.99821 * 95.30005 * 6 5 2 17 17 O 1.21282 * 120.00069 * 177.01038 * 16 6 5 18 18 C 1.50699 * 120.00139 * 357.28466 * 16 6 5 19 19 C 1.53001 * 109.47449 * 174.25215 * 18 16 6 20 20 C 1.52991 * 109.47405 * 180.02562 * 19 18 16 21 21 C 1.53001 * 115.55248 * 34.33060 * 20 19 18 22 22 C 1.52998 * 117.49823 * 248.62220 * 20 19 18 23 23 C 1.52996 * 60.00136 * 252.51023 * 22 20 19 24 24 H 1.09002 * 109.47413 * 300.00005 * 1 2 3 25 25 H 1.08999 * 109.46893 * 60.00291 * 1 2 3 26 26 H 1.08999 * 109.46907 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47299 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46885 * 300.00247 * 3 2 1 29 29 H 1.09002 * 109.46902 * 59.99682 * 3 2 1 30 30 H 1.09000 * 109.46592 * 294.87410 * 4 2 1 31 31 H 1.08995 * 109.47222 * 54.87377 * 4 2 1 32 32 H 1.08998 * 109.47116 * 174.87882 * 4 2 1 33 33 H 1.09003 * 109.47410 * 297.74438 * 5 2 1 34 34 H 1.08998 * 109.47800 * 177.73985 * 5 2 1 35 35 H 1.09005 * 109.46778 * 29.99730 * 7 6 5 36 36 H 1.09001 * 109.47365 * 149.99586 * 7 6 5 37 37 H 0.96998 * 119.99965 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.47164 * 294.25291 * 18 16 6 39 39 H 1.09005 * 109.46920 * 54.25138 * 18 16 6 40 40 H 1.09000 * 109.46999 * 300.00177 * 19 18 16 41 41 H 1.08996 * 109.47209 * 59.99847 * 19 18 16 42 42 H 1.08992 * 109.47498 * 85.57939 * 21 20 19 43 43 H 1.09003 * 109.47044 * 205.58900 * 21 20 19 44 44 H 1.09007 * 109.46671 * 325.58133 * 21 20 19 45 45 H 1.09005 * 117.50080 * 359.97438 * 22 20 19 46 46 H 1.09005 * 117.50112 * 145.02099 * 22 20 19 47 47 H 1.09010 * 117.49818 * 252.51309 * 23 22 20 48 48 H 1.08992 * 117.50232 * 107.49024 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.5077 -2.0858 1.2768 7 6 0.1778 -2.3422 1.8355 8 6 0.2992 -2.6294 3.3099 9 1 1.2699 -2.6221 3.7833 10 6 -0.8290 -2.9015 4.0543 11 7 -2.0110 -2.9099 3.4778 12 14 -0.6786 -3.2568 5.8820 13 1 0.7491 -3.1862 6.2842 14 1 -1.4592 -2.2519 6.6475 15 1 -1.2063 -4.6153 6.1672 16 6 2.2414 -3.1053 0.7883 17 8 1.8241 -4.2418 0.8603 18 6 3.5831 -2.8338 0.1581 19 6 4.2654 -4.1608 -0.1807 20 6 5.6278 -3.8852 -0.8199 21 6 6.3674 -2.6541 -0.2923 22 6 5.7959 -4.2299 -2.3011 23 6 6.4713 -5.0928 -1.2334 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.7536 -1.7719 -1.2045 31 1 1.6037 -0.2631 -2.1369 32 1 3.1261 -0.6424 -1.2963 33 1 1.7101 -0.1845 2.1388 34 1 3.1292 -0.7564 1.2292 35 1 -0.4538 -1.4664 1.6866 36 1 -0.2677 -3.2010 1.3335 37 1 -2.8046 -3.1017 4.0015 38 1 3.4454 -2.2529 -0.7538 39 1 4.2054 -2.2731 0.8556 40 1 4.4031 -4.7417 0.7312 41 1 3.6432 -4.7215 -0.8782 42 1 6.9355 -2.9252 0.5975 43 1 7.0477 -2.2828 -1.0587 44 1 5.6457 -1.8772 -0.0399 45 1 4.9359 -4.6534 -2.8201 46 1 6.4334 -3.5795 -2.9000 47 1 7.5533 -5.0100 -1.1298 48 1 6.0558 -6.0835 -1.0500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932061305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:07 Heat of formation + Delta-G solvation = -29.543350 kcal Electronic energy + Delta-G solvation = -23749.755472 eV Core-core repulsion = 20612.066172 eV Total energy + Delta-G solvation = -3137.689300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.69339 -38.21869 -36.90476 -33.85016 -32.45205 -31.93831 -28.47252 -27.83820 -27.20917 -26.78033 -25.54264 -24.41278 -22.49040 -22.11778 -19.24397 -18.74859 -17.73564 -16.62145 -16.40735 -15.49607 -15.35166 -15.05879 -14.39829 -14.37247 -13.96326 -13.76339 -13.47337 -13.17749 -12.73462 -12.61414 -12.37422 -12.23217 -12.11205 -11.95907 -11.69255 -11.50298 -11.35795 -11.30204 -11.24534 -10.94478 -10.92544 -10.82289 -10.60311 -10.53929 -10.31511 -10.17114 -10.06916 -10.01898 -9.52917 -9.47429 -8.74353 -8.37607 -7.53372 -5.99907 -4.03415 3.31725 3.39330 3.43036 3.54558 3.72399 4.03035 4.48304 4.69208 4.76210 4.91797 4.98894 5.04326 5.06703 5.19393 5.33757 5.42718 5.48417 5.51099 5.59774 5.65173 5.71689 5.74331 5.76234 5.81275 5.87121 5.87800 5.95312 6.00470 6.10413 6.11891 6.15243 6.17973 6.23185 6.25627 6.34848 6.39578 6.45408 6.52045 6.61845 6.79413 7.17984 7.50304 7.64452 7.97451 8.30901 8.53117 8.96894 9.20943 9.61331 11.07922 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.005412 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.509018 B = 5172.010323 C = 6411.413637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.137 4.137 4 C -0.145 4.145 5 C 0.121 3.879 6 N -0.594 5.594 7 C 0.238 3.762 8 C -0.522 4.522 9 H 0.056 0.944 10 C 0.060 3.940 11 N -0.896 5.896 12 Si 0.895 3.105 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.503 3.497 17 O -0.545 6.545 18 C -0.156 4.156 19 C -0.065 4.065 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.177 4.177 23 C -0.178 4.178 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.039 0.961 37 H 0.261 0.739 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.012 6.200 -10.528 18.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.202 4.202 5 C -0.004 4.004 6 N -0.324 5.324 7 C 0.119 3.881 8 C -0.561 4.561 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.210 1.210 16 C 0.290 3.710 17 O -0.423 6.423 18 C -0.195 4.195 19 C -0.103 4.103 20 C -0.124 4.124 21 C -0.179 4.179 22 C -0.214 4.214 23 C -0.215 4.215 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.571 5.568 -10.429 17.998 hybrid contribution -0.004 -0.157 1.078 1.090 sum 13.566 5.411 -9.351 17.343 Atomic orbital electron populations 1.22042 0.93921 1.03269 1.00865 1.20992 0.96890 0.95020 0.95868 1.21808 1.00462 0.95474 1.01735 1.22119 1.00046 1.01043 0.97024 1.21521 0.97617 0.83926 0.97313 1.48171 1.19790 1.05528 1.58956 1.19469 0.77494 0.97827 0.93266 1.21506 0.93251 1.47583 0.93724 0.92597 1.24916 0.95196 0.95392 0.98623 1.69937 0.97943 1.49669 1.35979 0.86488 0.78042 0.77935 0.85222 1.19875 1.21046 1.20958 1.20411 0.86335 0.85250 0.78982 1.90660 1.72242 1.21458 1.57962 1.22210 0.95122 0.99696 1.02478 1.20842 0.91843 0.96581 1.01037 1.21562 0.97340 0.96758 0.96722 1.21482 0.99644 0.96106 1.00646 1.23154 1.03081 1.03649 0.91555 1.23007 0.98585 0.95815 1.04136 0.92368 0.93780 0.90946 0.92929 0.92835 0.92492 0.92041 0.93039 0.92637 0.90298 0.91569 0.93747 0.94346 0.92894 0.88080 0.89583 0.91164 0.91132 0.92306 0.92818 0.91255 0.88884 0.89179 0.89135 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.06 37.15 0.26 -2.00 16 2 C -0.09 -1.18 0.85 -154.51 -0.13 -1.31 16 3 C -0.14 -1.50 8.47 37.16 0.31 -1.18 16 4 C -0.15 -1.84 6.75 37.16 0.25 -1.59 16 5 C 0.12 1.94 4.57 -4.04 -0.02 1.92 16 6 N -0.59 -12.29 1.98 -175.05 -0.35 -12.64 16 7 C 0.24 6.14 3.97 -5.19 -0.02 6.12 16 8 C -0.52 -14.85 9.39 -34.44 -0.32 -15.17 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 12 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 16 C 0.50 10.39 6.40 -10.99 -0.07 10.32 16 17 O -0.55 -13.85 15.59 5.56 0.09 -13.77 16 18 C -0.16 -2.31 3.14 -27.88 -0.09 -2.40 16 19 C -0.07 -0.95 4.71 -26.74 -0.13 -1.07 16 20 C -0.12 -1.41 2.47 -154.51 -0.38 -1.79 16 21 C -0.12 -1.20 9.49 37.16 0.35 -0.85 16 22 C -0.18 -1.81 9.82 -26.73 -0.26 -2.08 16 23 C -0.18 -1.86 9.97 -26.73 -0.27 -2.13 16 24 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.36 5.67 -51.93 -0.29 1.06 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.92 5.62 -51.93 -0.29 0.63 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.60 6.89 -51.93 -0.36 0.24 16 33 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 34 H 0.07 0.90 6.10 -51.93 -0.32 0.58 16 35 H 0.04 1.13 5.39 -51.93 -0.28 0.85 16 36 H 0.04 1.14 7.47 -51.93 -0.39 0.75 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.10 1.32 4.08 -51.93 -0.21 1.11 16 39 H 0.09 1.15 5.31 -51.93 -0.28 0.88 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 1.10 7.80 -51.93 -0.40 0.70 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.46 7.90 -51.93 -0.41 0.05 16 44 H 0.07 0.67 5.59 -51.93 -0.29 0.38 16 45 H 0.09 0.97 8.05 -51.93 -0.42 0.55 16 46 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 47 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 48 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -32.06 363.59 -8.21 -40.27 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -8.54 Total: 1.08 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.60 Total: -11.56 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.39 Total: -38.59 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.09 Total: -13.77 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.06 -8.21 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932061305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.725 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds