Wall clock time and date at job start Tue Mar 31 2020 05:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 110.99955 * 2 1 4 4 C 1.46900 * 111.00337 * 123.95995 * 2 1 3 5 5 C 1.50699 * 112.84777 * 298.18901 * 4 2 1 6 6 O 1.21282 * 120.00095 * 91.92736 * 5 4 2 7 7 N 1.34775 * 119.99829 * 271.92711 * 5 4 2 8 8 C 1.47024 * 125.64899 * 355.63246 * 7 5 4 9 9 C 1.54366 * 107.28607 * 181.05760 * 8 7 5 10 10 C 1.55152 * 102.92525 * 22.13585 * 9 8 7 11 11 H 1.09002 * 111.00117 * 82.64052 * 10 9 8 12 12 N 1.46499 * 111.00761 * 206.45288 * 10 9 8 13 13 C 1.36939 * 119.99815 * 270.41758 * 12 10 9 14 14 H 1.07996 * 120.00244 * 0.02562 * 13 12 10 15 15 C 1.38816 * 119.99819 * 179.97438 * 13 12 10 16 16 N 1.31619 * 119.99764 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 119.99909 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47114 * 269.99785 * 17 15 13 19 19 H 1.48502 * 109.47398 * 29.99747 * 17 15 13 20 20 H 1.48505 * 109.47232 * 149.99945 * 17 15 13 21 21 C 1.47426 * 125.64527 * 175.59182 * 7 5 4 22 22 C 1.53783 * 113.61162 * 69.38329 * 4 2 1 23 23 C 1.53952 * 87.01945 * 89.23380 * 22 4 2 24 24 C 1.53779 * 87.11602 * 25.35798 * 23 22 4 25 25 H 1.09000 * 109.47037 * 292.66437 * 1 2 3 26 26 H 1.08998 * 109.47375 * 52.67000 * 1 2 3 27 27 H 1.09004 * 109.47370 * 172.66746 * 1 2 3 28 28 H 1.08998 * 109.47198 * 189.59087 * 3 2 1 29 29 H 1.08999 * 109.47602 * 309.59397 * 3 2 1 30 30 H 1.09006 * 109.46759 * 69.59211 * 3 2 1 31 31 H 1.08998 * 109.88401 * 300.44101 * 8 7 5 32 32 H 1.08998 * 109.88176 * 61.45395 * 8 7 5 33 33 H 1.09005 * 110.70483 * 263.79008 * 9 8 7 34 34 H 1.09001 * 110.75622 * 140.51131 * 9 8 7 35 35 H 0.96995 * 120.00375 * 90.42373 * 12 10 9 36 36 H 0.97000 * 119.99320 * 179.97438 * 16 15 13 37 37 H 1.08993 * 110.36956 * 37.06747 * 21 7 5 38 38 H 1.09002 * 110.45956 * 274.79011 * 21 7 5 39 39 H 1.09004 * 113.61066 * 203.74656 * 22 4 2 40 40 H 1.09001 * 113.61639 * 334.65503 * 22 4 2 41 41 H 1.08998 * 113.53457 * 270.80984 * 23 22 4 42 42 H 1.09002 * 113.74607 * 139.94245 * 23 22 4 43 43 H 1.08996 * 113.61663 * 220.09503 * 24 23 22 44 44 H 1.09005 * 113.68885 * 89.19468 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.5928 -0.1873 2.4694 6 8 0.5847 -0.5767 3.0199 7 7 2.3529 0.7629 3.0487 8 6 3.6397 1.2593 2.5395 9 6 4.1519 2.3169 3.5405 10 6 3.4000 1.9507 4.8473 11 1 3.9077 1.1450 5.3776 12 7 3.2421 3.1249 5.7091 13 6 4.2064 3.4316 6.6317 14 1 5.0834 2.8082 6.7239 15 6 4.0571 4.5445 7.4479 16 7 4.9842 4.8396 8.3344 17 14 2.5405 5.6232 7.2880 18 1 2.7984 6.6957 6.2938 19 1 1.3909 4.7976 6.8385 20 1 2.2264 6.2340 8.6047 21 6 2.0312 1.4774 4.2975 22 6 1.7531 -2.2805 1.0252 23 6 3.0995 -2.3597 0.2829 24 6 3.4980 -1.0755 1.0291 25 1 -0.3633 0.3960 0.9483 26 1 -0.3634 0.6232 -0.8171 27 1 -0.3634 -1.0193 -0.1312 28 1 3.0716 1.3475 -0.1712 29 1 1.5142 1.9454 -0.7919 30 1 1.7910 1.8390 0.9632 31 1 4.3531 0.4381 2.4715 32 1 3.5003 1.7114 1.5575 33 1 3.8852 3.3210 3.2105 34 1 5.2296 2.2287 3.6780 35 1 2.4546 3.6850 5.6262 36 1 4.8799 5.6175 8.9044 37 1 1.5498 0.8041 5.0066 38 1 1.3885 2.3334 4.0920 39 1 1.7534 -2.7951 1.9861 40 1 0.8954 -2.5407 0.4048 41 1 3.0103 -2.2282 -0.7955 42 1 3.7005 -3.2274 0.5552 43 1 4.0468 -0.3643 0.4119 44 1 3.9764 -1.2587 1.9913 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968904185.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:08 Heat of formation + Delta-G solvation = 28.585479 kcal Electronic energy + Delta-G solvation = -23580.815516 eV Core-core repulsion = 20342.106528 eV Total energy + Delta-G solvation = -3238.708988 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19768 -38.49555 -37.15852 -35.25285 -34.33644 -31.68655 -29.92465 -28.92784 -27.79421 -26.55621 -25.45597 -23.85145 -22.98169 -22.68542 -20.28252 -20.09197 -18.66275 -17.82455 -17.35479 -16.33822 -16.09801 -15.48926 -14.98795 -14.85793 -14.30796 -14.17070 -13.92035 -13.64180 -13.37423 -12.84125 -12.71503 -12.59319 -12.54733 -12.31577 -12.13804 -11.92105 -11.78647 -11.65575 -11.45316 -11.31694 -10.93584 -10.91118 -10.75354 -10.50969 -10.37795 -10.10816 -9.99888 -9.68750 -9.02920 -8.51910 -8.49489 -7.40357 -5.86380 -3.24158 2.55742 3.00796 3.31719 3.34758 3.40323 3.57784 4.15131 4.42525 4.48427 4.50817 4.62138 4.83707 4.88785 5.05509 5.16027 5.20332 5.21476 5.30304 5.33685 5.40826 5.47216 5.54951 5.55681 5.59153 5.63506 5.70571 5.74433 5.82906 5.84828 5.85998 5.97306 6.07159 6.10107 6.20711 6.38944 6.48080 6.64383 6.72998 6.73348 7.59933 7.87277 8.17371 8.32010 9.08414 9.80844 9.98913 11.31364 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029937 B = 0.004220 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.084195 B = 6633.408610 C = 6856.328353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.502 5.502 3 C 0.008 3.992 4 C 0.068 3.932 5 C 0.511 3.489 6 O -0.543 6.543 7 N -0.606 5.606 8 C 0.082 3.918 9 C -0.154 4.154 10 C 0.178 3.822 11 H 0.073 0.927 12 N -0.738 5.738 13 C -0.250 4.250 14 H 0.092 0.908 15 C 0.010 3.990 16 N -0.930 5.930 17 Si 0.883 3.117 18 H -0.283 1.283 19 H -0.277 1.277 20 H -0.289 1.289 21 C 0.093 3.907 22 C -0.108 4.108 23 C -0.128 4.128 24 C -0.129 4.129 25 H 0.035 0.965 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.363 0.637 36 H 0.261 0.739 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.378 -11.162 -19.698 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.226 5.226 3 C -0.140 4.140 4 C -0.025 4.025 5 C 0.297 3.703 6 O -0.419 6.419 7 N -0.341 5.341 8 C -0.041 4.041 9 C -0.195 4.195 10 C 0.067 3.933 11 H 0.091 0.909 12 N -0.380 5.380 13 C -0.380 4.380 14 H 0.110 0.890 15 C -0.187 4.187 16 N -0.577 5.577 17 Si 0.713 3.287 18 H -0.210 1.210 19 H -0.203 1.203 20 H -0.216 1.216 21 C -0.031 4.031 22 C -0.146 4.146 23 C -0.166 4.166 24 C -0.166 4.166 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.196 0.804 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.607 -11.633 -19.685 23.325 hybrid contribution -1.322 1.511 0.773 2.152 sum -5.930 -10.122 -18.912 22.255 Atomic orbital electron populations 1.22450 0.86543 1.02881 1.01095 1.62249 1.08633 1.13994 1.37704 1.22770 1.01282 0.88541 1.01420 1.22551 0.98044 0.95743 0.86159 1.21114 0.83213 0.78582 0.87390 1.90681 1.26117 1.60010 1.65106 1.48577 1.22147 1.37904 1.25434 1.22664 0.84715 0.97952 0.98719 1.23394 1.01608 0.97852 0.96687 1.21252 0.91624 0.90626 0.89846 0.90906 1.42610 1.24295 1.28591 1.42519 1.19034 0.99719 1.08893 1.10309 0.88989 1.24663 0.97693 0.98339 0.97967 1.69696 1.34285 1.29037 1.24634 0.86578 0.83725 0.81095 0.77297 1.20958 1.20293 1.21557 1.22573 0.98997 0.96062 0.85444 1.22868 0.98805 0.91596 1.01339 1.22760 0.96339 0.97307 1.00157 1.23207 0.93354 0.98660 1.01392 0.94596 0.91110 0.90864 0.90486 0.90958 0.94120 0.90990 0.91034 0.90775 0.90177 0.80372 0.92885 0.90423 0.91878 0.89379 0.90411 0.89302 0.91293 0.90080 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.25 60.06 0.56 0.75 16 2 N -0.50 -5.31 4.80 -235.80 -1.13 -6.44 16 3 C 0.01 0.07 7.77 60.06 0.47 0.54 16 4 C 0.07 0.78 0.23 -131.94 -0.03 0.75 16 5 C 0.51 7.70 5.19 -10.99 -0.06 7.64 16 6 O -0.54 -10.10 16.35 5.56 0.09 -10.01 16 7 N -0.61 -8.90 2.76 -170.49 -0.47 -9.37 16 8 C 0.08 1.01 4.90 -3.04 -0.01 1.00 16 9 C -0.15 -2.34 6.65 -24.88 -0.17 -2.50 16 10 C 0.18 3.26 3.70 -65.78 -0.24 3.01 16 11 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 12 N -0.74 -16.74 5.07 -51.35 -0.26 -17.00 16 13 C -0.25 -6.78 10.46 -15.06 -0.16 -6.94 16 14 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 15 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 16 N -0.93 -28.51 13.97 55.49 0.78 -27.74 16 17 Si 0.88 21.60 27.73 -169.99 -4.71 16.89 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 C 0.09 1.57 6.56 -2.53 -0.02 1.55 16 22 C -0.11 -1.13 6.94 -25.83 -0.18 -1.30 16 23 C -0.13 -1.08 8.00 -25.83 -0.21 -1.28 16 24 C -0.13 -1.21 4.73 -25.92 -0.12 -1.33 16 25 H 0.04 0.47 6.78 -51.93 -0.35 0.12 16 26 H 0.07 0.62 7.99 -51.93 -0.41 0.21 16 27 H 0.07 0.73 6.95 -51.93 -0.36 0.37 16 28 H 0.08 0.66 5.95 -51.93 -0.31 0.35 16 29 H 0.07 0.61 7.98 -51.93 -0.41 0.20 16 30 H 0.04 0.48 5.52 -51.93 -0.29 0.19 16 31 H 0.07 0.78 5.60 -51.93 -0.29 0.49 16 32 H 0.07 0.77 4.35 -51.93 -0.23 0.54 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.36 8.16 5.59 -40.82 -0.23 7.94 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.08 1.40 8.00 -51.93 -0.42 0.99 16 38 H 0.06 1.08 8.00 -51.93 -0.42 0.67 16 39 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 40 H 0.08 0.78 6.95 -51.93 -0.36 0.42 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.68 6.79 -51.93 -0.35 0.33 16 44 H 0.09 0.89 6.84 -51.93 -0.36 0.53 16 LS Contribution 329.71 15.07 4.97 4.97 Total: -1.00 -31.73 329.71 -7.92 -39.64 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.91 Total: 6.99 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -0.27 Total: 2.07 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -1.09 Total: -60.55 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.73 -7.92 -39.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968904185.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.227 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds