Wall clock time and date at job start Tue Mar 31 2020 05:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99870 * 2 1 4 4 C 1.46899 * 111.00270 * 123.96105 * 2 1 3 5 5 H 1.08997 * 109.46927 * 295.74891 * 4 2 1 6 6 C 1.50702 * 109.46890 * 175.74578 * 4 2 1 7 7 O 1.21274 * 120.00160 * 323.57548 * 6 4 2 8 8 N 1.34779 * 119.99682 * 143.57386 * 6 4 2 9 9 C 1.47753 * 125.82351 * 354.58869 * 8 6 4 10 10 C 1.54905 * 104.83829 * 155.82766 * 9 8 6 11 11 C 1.55154 * 101.58463 * 37.09698 * 10 9 8 12 12 H 1.08987 * 110.87456 * 82.92965 * 11 10 9 13 13 N 1.46502 * 110.71943 * 206.13650 * 11 10 9 14 14 C 1.36943 * 119.99618 * 268.52058 * 13 11 10 15 15 H 1.07998 * 119.99693 * 359.97438 * 14 13 11 16 16 C 1.38814 * 119.99922 * 179.97438 * 14 13 11 17 17 N 1.31621 * 120.00165 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99802 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47151 * 60.00021 * 18 16 14 20 20 H 1.48498 * 109.46647 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47336 * 299.99844 * 18 16 14 22 22 C 1.47020 * 125.64797 * 174.67447 * 8 6 4 23 23 C 1.52994 * 109.47062 * 55.74475 * 4 2 1 24 24 C 1.53000 * 117.50010 * 251.91730 * 23 4 2 25 25 C 1.52998 * 59.99983 * 252.51290 * 24 23 4 26 26 H 1.09001 * 109.46922 * 296.03985 * 1 2 3 27 27 H 1.09005 * 109.47541 * 56.04156 * 1 2 3 28 28 H 1.09004 * 109.47142 * 176.04171 * 1 2 3 29 29 H 1.09005 * 109.47118 * 189.17542 * 3 2 1 30 30 H 1.09003 * 109.47534 * 309.18416 * 3 2 1 31 31 H 1.09000 * 109.46664 * 69.17907 * 3 2 1 32 32 H 1.09004 * 110.28773 * 37.02394 * 9 8 6 33 33 H 1.09000 * 110.52347 * 274.75243 * 9 8 6 34 34 H 1.09003 * 111.00586 * 279.01824 * 10 9 8 35 35 H 1.09004 * 111.03327 * 155.18201 * 10 9 8 36 36 H 0.96999 * 120.00810 * 88.51448 * 13 11 10 37 37 H 0.96991 * 120.00512 * 179.97438 * 17 16 14 38 38 H 1.09008 * 109.87855 * 61.60937 * 22 8 6 39 39 H 1.08997 * 109.88721 * 300.60513 * 22 8 6 40 40 H 1.09001 * 115.54986 * 37.63095 * 23 4 2 41 41 H 1.08995 * 117.49725 * 0.02562 * 24 23 4 42 42 H 1.08998 * 117.49762 * 145.02082 * 24 23 4 43 43 H 1.09004 * 117.49905 * 252.50632 * 25 24 23 44 44 H 1.08996 * 117.51454 * 107.48432 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7661 1.1375 5 1 1.7089 -0.2772 2.0685 6 6 3.4983 -0.8318 1.0463 7 8 4.0365 -0.9288 -0.0362 8 7 4.2442 -0.7826 2.1678 9 6 3.7350 -0.5533 3.5357 10 6 4.7984 -1.1876 4.4664 11 6 6.1130 -0.8422 3.7183 12 1 6.4417 0.1691 3.9574 13 7 7.1614 -1.8148 4.0365 14 6 8.0153 -1.5837 5.0819 15 1 7.9160 -0.6843 5.6714 16 6 9.0083 -2.5055 5.3837 17 7 9.1289 -3.6019 4.6655 18 14 10.1735 -2.1899 6.8093 19 1 9.3951 -2.0757 8.0688 20 1 11.1341 -3.3167 6.9221 21 1 10.9170 -0.9269 6.5706 22 6 5.7037 -0.9468 2.2340 23 6 1.4203 -2.1835 1.1077 24 6 0.3753 -2.5442 2.1654 25 6 1.7896 -3.1201 2.2597 26 1 -0.3633 0.4511 0.9234 27 1 -0.3634 0.5741 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0728 1.3471 -0.1639 30 1 1.5194 1.9434 -0.7966 31 1 1.7845 1.8415 0.9606 32 1 2.7721 -1.0467 3.6682 33 1 3.6441 0.5143 3.7357 34 1 4.6614 -2.2667 4.5378 35 1 4.7785 -0.7271 5.4542 36 1 7.2507 -2.6225 3.5068 37 1 9.8230 -4.2458 4.8762 38 1 6.1917 -0.1600 1.6585 39 1 5.9853 -1.9231 1.8396 40 1 1.3072 -2.6243 0.1172 41 1 0.0973 -1.7716 2.8822 42 1 -0.4256 -3.2223 1.8709 43 1 1.9192 -4.1771 2.0273 44 1 2.4426 -2.7266 3.0387 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968912695.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:38 Heat of formation + Delta-G solvation = 23.243526 kcal Electronic energy + Delta-G solvation = -23078.444424 eV Core-core repulsion = 19839.503791 eV Total energy + Delta-G solvation = -3238.940633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38711 -38.17436 -36.98204 -35.89028 -34.10469 -31.55266 -29.60291 -29.04844 -27.80905 -27.31419 -23.90880 -22.94948 -22.54668 -22.49701 -21.16221 -20.00060 -18.71255 -17.44229 -17.36430 -16.43672 -15.68304 -15.60483 -15.00902 -14.75338 -14.40012 -14.10404 -13.59807 -13.55102 -13.46878 -13.24968 -12.57705 -12.52219 -12.30224 -12.21054 -11.90364 -11.87443 -11.80610 -11.57798 -11.25182 -11.13809 -10.84441 -10.73767 -10.60565 -10.48081 -10.35428 -10.13259 -9.77879 -9.40677 -8.98642 -8.50787 -8.36691 -7.06714 -5.83606 -3.14523 2.74252 3.00431 3.40144 3.44857 3.46011 3.54613 3.86925 4.47659 4.53016 4.63473 4.77745 4.82109 4.93520 4.98064 5.01813 5.15695 5.24526 5.26518 5.33687 5.38957 5.44846 5.49541 5.52662 5.55218 5.70254 5.74763 5.80107 5.82894 5.93011 5.93457 6.07248 6.12257 6.25606 6.34752 6.53606 6.58004 6.76727 6.81332 6.87342 7.62785 7.75029 8.33399 8.40481 9.45076 9.99260 10.33982 11.38435 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030253 B = 0.003782 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.306303 B = 7401.320047 C = 7706.926518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.524 5.524 3 C 0.021 3.979 4 C 0.106 3.894 5 H 0.057 0.943 6 C 0.535 3.465 7 O -0.524 6.524 8 N -0.614 5.614 9 C 0.094 3.906 10 C -0.154 4.154 11 C 0.173 3.827 12 H 0.066 0.934 13 N -0.714 5.714 14 C -0.247 4.247 15 H 0.072 0.928 16 C -0.009 4.009 17 N -0.930 5.930 18 Si 0.909 3.091 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.101 3.899 23 C -0.142 4.142 24 C -0.175 4.175 25 C -0.175 4.175 26 H 0.024 0.976 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.762 6.738 -4.620 21.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.249 5.249 3 C -0.127 4.127 4 C -0.006 4.006 5 H 0.075 0.925 6 C 0.322 3.678 7 O -0.399 6.399 8 N -0.349 5.349 9 C -0.029 4.029 10 C -0.195 4.195 11 C 0.061 3.939 12 H 0.084 0.916 13 N -0.355 5.355 14 C -0.378 4.378 15 H 0.090 0.910 16 C -0.205 4.205 17 N -0.577 5.577 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C -0.023 4.023 23 C -0.161 4.161 24 C -0.212 4.212 25 C -0.212 4.212 26 H 0.043 0.957 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.221 0.779 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.137 0.863 41 H 0.111 0.889 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.204 6.504 -5.585 21.031 hybrid contribution 0.370 0.248 1.459 1.525 sum -18.834 6.752 -4.126 20.429 Atomic orbital electron populations 1.22408 0.86587 1.02733 1.00322 1.61689 1.07853 1.13749 1.41566 1.22460 1.01990 0.88087 1.00153 1.21156 0.92000 0.94274 0.93153 0.92488 1.19878 0.88122 0.76825 0.83008 1.90691 1.73454 1.48759 1.26991 1.48574 1.08607 1.71057 1.06664 1.22525 0.98275 1.00053 0.82017 1.23568 0.96274 1.01406 0.98295 1.21170 0.88497 0.94708 0.89530 0.91579 1.42361 1.33981 1.22224 1.36911 1.19180 1.08118 1.04180 1.06348 0.91018 1.24771 0.99410 0.96865 0.99491 1.69652 1.35732 1.10952 1.41352 0.86249 0.80675 0.77064 0.82048 1.21190 1.21648 1.21159 1.22327 0.78766 1.01972 0.99190 1.22039 1.03707 0.93997 0.96356 1.23069 0.92896 1.03703 1.01564 1.23141 0.97994 0.99542 1.00539 0.95738 0.91207 0.90741 0.90721 0.90941 0.95727 0.91493 0.91797 0.90574 0.90550 0.77912 0.93271 0.91765 0.91171 0.86346 0.88905 0.88408 0.88178 0.87980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.24 60.06 0.55 0.80 16 2 N -0.52 -6.37 4.65 -244.58 -1.14 -7.50 16 3 C 0.02 0.24 9.21 60.07 0.55 0.79 16 4 C 0.11 1.33 1.63 -68.87 -0.11 1.22 16 5 H 0.06 0.65 6.46 -51.93 -0.34 0.31 16 6 C 0.53 8.65 5.53 -10.98 -0.06 8.59 16 7 O -0.52 -10.52 16.50 5.56 0.09 -10.43 16 8 N -0.61 -9.55 3.34 -170.26 -0.57 -10.12 16 9 C 0.09 1.22 5.92 -2.35 -0.01 1.21 16 10 C -0.15 -2.43 6.77 -24.59 -0.17 -2.59 16 11 C 0.17 3.27 3.61 -66.10 -0.24 3.03 16 12 H 0.07 1.24 8.09 -51.94 -0.42 0.82 16 13 N -0.71 -17.25 5.22 -51.65 -0.27 -17.52 16 14 C -0.25 -6.60 9.96 -15.06 -0.15 -6.75 16 15 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 18 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.10 1.81 6.61 -3.06 -0.02 1.79 16 23 C -0.14 -1.61 3.72 -90.62 -0.34 -1.94 16 24 C -0.18 -1.53 10.01 -26.73 -0.27 -1.80 16 25 C -0.17 -1.92 9.91 -26.73 -0.27 -2.19 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 28 H 0.07 0.63 6.83 -51.93 -0.35 0.27 16 29 H 0.07 1.02 6.88 -51.93 -0.36 0.66 16 30 H 0.07 0.68 8.03 -51.93 -0.42 0.26 16 31 H 0.02 0.25 8.13 -51.93 -0.42 -0.18 16 32 H 0.07 0.74 5.29 -51.93 -0.27 0.47 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.39 10.08 7.56 -40.82 -0.31 9.77 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 38 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 39 H 0.07 1.39 7.71 -51.93 -0.40 0.99 16 40 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.09 0.73 8.07 -51.93 -0.42 0.32 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.10 1.22 5.69 -51.93 -0.30 0.92 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -31.32 349.35 -8.89 -40.21 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.35 Total: 8.32 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -0.62 Total: 1.80 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -1.25 Total: -61.95 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.32 -8.89 -40.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968912695.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.455 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds