Wall clock time and date at job start Tue Mar 31 2020 05:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 111.00031 * 2 1 4 4 C 1.46904 * 111.00162 * 123.95639 * 2 1 3 5 5 H 1.08997 * 109.46676 * 46.44570 * 4 2 1 6 6 C 1.50701 * 109.47067 * 166.44753 * 4 2 1 7 7 O 1.21283 * 119.99705 * 39.41439 * 6 4 2 8 8 N 1.34773 * 119.99921 * 219.41023 * 6 4 2 9 9 C 1.47425 * 125.64477 * 355.14943 * 8 6 4 10 10 C 1.54919 * 104.82944 * 155.84991 * 9 8 6 11 11 C 1.55157 * 101.58108 * 37.00787 * 10 9 8 12 12 H 1.09003 * 110.87375 * 82.93150 * 11 10 9 13 13 N 1.46499 * 110.72125 * 206.13616 * 11 10 9 14 14 C 1.36941 * 119.99921 * 268.52225 * 13 11 10 15 15 H 1.08005 * 119.99825 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00153 * 179.97438 * 14 13 11 17 17 N 1.31619 * 119.99973 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00101 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46859 * 90.00124 * 18 16 14 20 20 H 1.48499 * 109.46762 * 209.99903 * 18 16 14 21 21 H 1.48496 * 109.47008 * 330.00069 * 18 16 14 22 22 C 1.47020 * 125.64844 * 175.12659 * 8 6 4 23 23 C 1.52999 * 109.46641 * 286.44827 * 4 2 1 24 24 C 1.53006 * 117.49625 * 243.86564 * 23 4 2 25 25 C 1.52999 * 117.49527 * 175.20979 * 23 4 2 26 26 H 1.08998 * 109.46834 * 299.99921 * 1 2 3 27 27 H 1.09002 * 109.47135 * 59.99820 * 1 2 3 28 28 H 1.08997 * 109.46746 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47596 * 190.84157 * 3 2 1 30 30 H 1.09005 * 109.47503 * 310.84318 * 3 2 1 31 31 H 1.09003 * 109.46975 * 70.83868 * 3 2 1 32 32 H 1.08998 * 110.36917 * 274.68266 * 9 8 6 33 33 H 1.08996 * 110.37201 * 37.01199 * 9 8 6 34 34 H 1.08997 * 111.00216 * 155.08088 * 10 9 8 35 35 H 1.08996 * 111.00657 * 278.93690 * 10 9 8 36 36 H 0.96997 * 119.99946 * 88.51870 * 13 11 10 37 37 H 0.96998 * 120.00300 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.88210 * 300.49745 * 22 8 6 39 39 H 1.09001 * 109.88509 * 61.66217 * 22 8 6 40 40 H 1.09002 * 115.55593 * 29.54043 * 23 4 2 41 41 H 1.08994 * 117.49901 * 0.02562 * 24 23 4 42 42 H 1.08999 * 117.49797 * 145.02803 * 24 23 4 43 43 H 1.09006 * 117.50160 * 214.97713 * 25 23 4 44 44 H 1.09000 * 117.50097 * 359.97420 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 1.4646 -1.7150 1.2134 6 6 3.4651 -1.0276 0.9300 7 8 4.1735 -0.1648 0.4561 8 7 3.9920 -2.2203 1.2710 9 6 3.2725 -3.3161 1.9456 10 6 4.0511 -4.5985 1.5594 11 6 5.5158 -4.0866 1.5629 12 1 5.9253 -4.0881 2.5731 13 7 6.3487 -4.8925 0.6668 14 6 7.0165 -5.9856 1.1512 15 1 6.9294 -6.2532 2.1939 16 6 7.8052 -6.7496 0.3021 17 7 7.9117 -6.4231 -0.9686 18 14 8.7156 -8.2410 0.9626 19 1 7.8525 -9.4430 0.8378 20 1 9.9633 -8.4444 0.1835 21 1 9.0545 -8.0212 2.3916 22 6 5.3792 -2.6442 1.0313 23 6 1.7969 0.0339 2.4266 24 6 3.0509 0.4822 3.1800 25 6 2.1799 -0.6431 3.7441 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.0680 1.3490 -0.1933 30 1 1.4983 1.9516 -0.7774 31 1 1.8108 1.8315 0.9708 32 1 3.2899 -3.1727 3.0260 33 1 2.2451 -3.3733 1.5862 34 1 3.9090 -5.3811 2.3046 35 1 3.7617 -4.9477 0.5683 36 1 6.4271 -4.6520 -0.2696 37 1 8.4626 -6.9571 -1.5620 38 1 5.5946 -2.6209 -0.0369 39 1 6.0653 -1.9861 1.5644 40 1 0.9373 0.7040 2.4364 41 1 4.0172 0.2076 2.7572 42 1 3.0161 1.4471 3.6858 43 1 1.5725 -0.4181 4.6208 44 1 2.5729 -1.6585 3.6926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968912696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:40 Heat of formation + Delta-G solvation = 28.281714 kcal Electronic energy + Delta-G solvation = -23151.503721 eV Core-core repulsion = 19912.781561 eV Total energy + Delta-G solvation = -3238.722160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.67109 -38.26742 -36.77935 -35.78866 -34.12128 -31.56828 -29.58876 -29.00248 -27.61391 -27.24763 -23.87758 -23.07063 -22.98969 -22.37436 -21.28056 -19.96710 -18.49605 -17.42730 -17.09494 -16.76440 -16.17571 -15.17614 -14.98579 -14.76612 -14.35823 -14.06697 -13.64301 -13.51223 -13.25191 -13.11643 -12.66326 -12.49872 -12.40330 -12.08596 -12.01128 -11.83022 -11.64503 -11.55560 -11.40651 -11.14676 -10.85605 -10.70253 -10.65178 -10.33925 -10.31380 -10.09343 -9.76634 -9.44259 -8.97745 -8.42279 -8.34275 -7.05484 -5.82665 -3.13532 2.70246 3.04180 3.40504 3.45689 3.47715 3.57264 3.98315 4.39396 4.53579 4.54314 4.70227 4.74831 5.00205 5.03625 5.09445 5.15155 5.23926 5.31379 5.36570 5.43247 5.52309 5.57843 5.59989 5.63896 5.65423 5.69683 5.75965 5.89823 5.96774 5.99027 6.13261 6.19137 6.27937 6.37254 6.58351 6.60192 6.79941 6.89256 6.91597 7.64198 7.74898 8.34079 8.37582 9.46069 10.00425 10.35047 11.39476 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031410 B = 0.003712 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.233455 B = 7542.033523 C = 7786.594507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.526 5.526 3 C 0.012 3.988 4 C 0.099 3.901 5 H 0.101 0.899 6 C 0.543 3.457 7 O -0.534 6.534 8 N -0.611 5.611 9 C 0.095 3.905 10 C -0.155 4.155 11 C 0.172 3.828 12 H 0.066 0.934 13 N -0.715 5.715 14 C -0.246 4.246 15 H 0.073 0.927 16 C -0.009 4.009 17 N -0.929 5.929 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.101 3.899 23 C -0.179 4.179 24 C -0.173 4.173 25 C -0.178 4.178 26 H 0.027 0.973 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.235 12.460 7.774 21.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.249 5.249 3 C -0.136 4.136 4 C -0.013 4.013 5 H 0.119 0.881 6 C 0.331 3.669 7 O -0.411 6.411 8 N -0.345 5.345 9 C -0.028 4.028 10 C -0.196 4.196 11 C 0.060 3.940 12 H 0.084 0.916 13 N -0.355 5.355 14 C -0.377 4.377 15 H 0.090 0.910 16 C -0.206 4.206 17 N -0.577 5.577 18 Si 0.739 3.261 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.023 4.023 23 C -0.199 4.199 24 C -0.210 4.210 25 C -0.216 4.216 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.221 0.779 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.599 12.626 7.115 21.292 hybrid contribution 0.065 -0.426 0.746 0.862 sum -15.534 12.200 7.861 21.259 Atomic orbital electron populations 1.22448 0.87064 1.02195 1.00750 1.61969 1.07556 1.15373 1.39956 1.22719 1.03930 0.87233 0.99679 1.21306 0.93598 0.98125 0.88294 0.88133 1.19810 0.89063 0.80639 0.77379 1.90600 1.61996 1.43624 1.44863 1.48480 1.13020 1.14171 1.58831 1.22505 0.96320 0.87489 0.96472 1.23579 0.98526 0.95044 1.02473 1.21181 0.90089 0.87727 0.94954 0.91570 1.42370 1.54296 1.30308 1.08547 1.19225 1.21464 1.02602 0.94448 0.90953 1.24772 1.00544 0.99623 0.95640 1.69665 1.43576 1.40961 1.03478 0.86175 0.79198 0.82834 0.77856 1.21638 1.21723 1.20673 1.22345 0.81251 0.96925 1.01742 1.22747 1.00595 1.04088 0.92511 1.23150 0.95532 0.99126 1.03164 1.23149 1.03714 0.98632 0.96066 0.95480 0.90997 0.91323 0.88138 0.92270 0.95253 0.91547 0.91330 0.90530 0.90557 0.77913 0.93329 0.91107 0.91742 0.87131 0.87888 0.88787 0.88572 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.34 60.07 0.56 0.77 16 2 N -0.53 -6.49 4.92 -244.58 -1.20 -7.70 16 3 C 0.01 0.14 8.94 60.06 0.54 0.68 16 4 C 0.10 1.21 2.19 -68.86 -0.15 1.06 16 5 H 0.10 1.12 6.05 -51.93 -0.31 0.81 16 6 C 0.54 8.46 4.93 -10.99 -0.05 8.41 16 7 O -0.53 -9.94 13.68 5.55 0.08 -9.86 16 8 N -0.61 -9.35 3.33 -170.51 -0.57 -9.92 16 9 C 0.10 1.21 6.00 -2.52 -0.02 1.20 16 10 C -0.15 -2.46 6.77 -24.58 -0.17 -2.62 16 11 C 0.17 3.25 3.61 -66.09 -0.24 3.01 16 12 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 13 N -0.71 -17.34 5.22 -51.65 -0.27 -17.61 16 14 C -0.25 -6.60 9.96 -15.06 -0.15 -6.75 16 15 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 16 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 17 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 18 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.10 1.79 6.62 -3.06 -0.02 1.77 16 23 C -0.18 -1.86 3.95 -90.62 -0.36 -2.21 16 24 C -0.17 -1.93 9.63 -26.69 -0.26 -2.18 16 25 C -0.18 -1.68 10.11 -26.69 -0.27 -1.95 16 26 H 0.03 0.21 6.90 -51.93 -0.36 -0.14 16 27 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 28 H 0.07 0.57 8.02 -51.93 -0.42 0.15 16 29 H 0.10 1.51 5.63 -51.93 -0.29 1.22 16 30 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 31 H 0.03 0.33 6.25 -51.93 -0.32 0.00 16 32 H 0.07 0.73 6.31 -51.93 -0.33 0.40 16 33 H 0.07 0.75 6.59 -51.93 -0.34 0.41 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.39 10.15 7.56 -40.82 -0.31 9.84 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.07 1.41 7.72 -51.93 -0.40 1.01 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.11 1.04 6.41 -51.93 -0.33 0.71 16 41 H 0.10 1.44 6.01 -51.93 -0.31 1.13 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 0.99 5.41 -51.93 -0.28 0.71 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -30.75 338.59 -8.77 -39.52 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.93 Total: 9.75 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -0.68 Total: 0.83 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: -1.32 Total: -62.16 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.75 -8.77 -39.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968912696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.803 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds