Wall clock time and date at job start Tue Mar 31 2020 05:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46893 * 110.99922 * 2 1 4 4 C 1.46895 * 110.99893 * 123.96078 * 2 1 3 5 5 H 1.08997 * 109.47704 * 54.99685 * 4 2 1 6 6 C 1.50700 * 109.47011 * 175.00049 * 4 2 1 7 7 O 1.21280 * 120.00248 * 45.45143 * 6 4 2 8 8 N 1.34777 * 119.99676 * 225.45330 * 6 4 2 9 9 C 1.47427 * 125.65246 * 355.22918 * 8 6 4 10 10 C 1.54905 * 104.83401 * 204.09356 * 9 8 6 11 11 C 1.55159 * 101.57999 * 322.98713 * 10 9 8 12 12 H 1.08991 * 110.72109 * 277.13840 * 11 10 9 13 13 N 1.46505 * 110.71895 * 153.86710 * 11 10 9 14 14 C 1.36934 * 120.00367 * 91.47685 * 13 11 10 15 15 H 1.08006 * 119.99724 * 0.02562 * 14 13 11 16 16 C 1.38803 * 120.00571 * 179.97438 * 14 13 11 17 17 N 1.31620 * 119.99923 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00408 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46914 * 90.00044 * 18 16 14 20 20 H 1.48501 * 109.47385 * 210.00146 * 18 16 14 21 21 H 1.48496 * 109.46896 * 330.00333 * 18 16 14 22 22 C 1.47028 * 125.64830 * 175.18438 * 8 6 4 23 23 C 1.53008 * 109.46981 * 294.99488 * 4 2 1 24 24 C 1.53001 * 117.49641 * 243.13523 * 23 4 2 25 25 C 1.52998 * 117.49651 * 174.47460 * 23 4 2 26 26 H 1.08999 * 109.46537 * 296.04214 * 1 2 3 27 27 H 1.08998 * 109.46784 * 56.04120 * 1 2 3 28 28 H 1.08994 * 109.47167 * 176.04576 * 1 2 3 29 29 H 1.09005 * 109.46951 * 183.95524 * 3 2 1 30 30 H 1.08997 * 109.47959 * 303.95904 * 3 2 1 31 31 H 1.09005 * 109.47373 * 63.96222 * 3 2 1 32 32 H 1.09002 * 110.36148 * 322.93165 * 9 8 6 33 33 H 1.08996 * 110.36951 * 85.25147 * 9 8 6 34 34 H 1.09003 * 111.00803 * 81.06082 * 10 9 8 35 35 H 1.08997 * 111.00325 * 204.91500 * 10 9 8 36 36 H 0.96999 * 119.99772 * 271.47540 * 13 11 10 37 37 H 0.96996 * 120.00319 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.88156 * 298.39597 * 22 8 6 39 39 H 1.09003 * 109.87660 * 59.55878 * 22 8 6 40 40 H 1.08999 * 115.54598 * 28.80212 * 23 4 2 41 41 H 1.08991 * 117.50205 * 359.97438 * 24 23 4 42 42 H 1.08999 * 117.49645 * 145.02540 * 24 23 4 43 43 H 1.09000 * 117.49529 * 214.97997 * 25 23 4 44 44 H 1.09000 * 117.50385 * 359.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 1 1.5754 -1.7718 1.1239 6 6 3.4969 -0.8474 1.0365 7 8 4.1415 0.1449 0.7705 8 7 4.1233 -2.0229 1.2419 9 6 3.4774 -3.2781 1.6672 10 6 4.6069 -4.0971 2.3403 11 6 5.8243 -3.7421 1.4461 12 1 5.8409 -4.3654 0.5522 13 7 7.0753 -3.8763 2.1967 14 6 7.7574 -5.0635 2.1841 15 1 7.3734 -5.9010 1.6204 16 6 8.9430 -5.1905 2.8947 17 7 9.4118 -4.1695 3.5804 18 14 9.8731 -6.8104 2.8781 19 1 10.8387 -6.8151 1.7498 20 1 10.6073 -6.9729 4.1586 21 1 8.9128 -7.9308 2.7124 22 6 5.5641 -2.2662 1.0780 23 6 1.6092 -0.0696 2.4439 24 6 2.7431 0.4579 3.3253 25 6 1.9543 -0.7822 3.7531 26 1 -0.3632 0.4512 0.9234 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0828 1.3431 -0.0709 30 1 1.5898 1.9164 -0.8523 31 1 1.7045 1.8723 0.9234 32 1 2.6810 -3.0714 2.3822 33 1 3.0835 -3.8136 0.8035 34 1 4.7680 -3.7699 3.3675 35 1 4.3917 -5.1649 2.3012 36 1 7.4204 -3.1240 2.7026 37 1 10.2401 -4.2583 4.0773 38 1 5.8552 -2.0854 0.0432 39 1 6.1283 -1.6130 1.7436 40 1 0.6851 0.5077 2.4134 41 1 3.7642 0.3085 2.9747 42 1 2.5648 1.3821 3.8751 43 1 1.2574 -0.6734 4.5841 44 1 2.4561 -1.7473 3.6838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018964924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:42 Heat of formation + Delta-G solvation = 30.990383 kcal Electronic energy + Delta-G solvation = -23200.781513 eV Core-core repulsion = 19962.176809 eV Total energy + Delta-G solvation = -3238.604704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71549 -38.27988 -36.77573 -35.75313 -34.14724 -31.59808 -29.61594 -28.98658 -27.58298 -27.24582 -23.88126 -23.00057 -22.96141 -22.39320 -21.21631 -19.99186 -18.56401 -17.42934 -17.08605 -16.84853 -15.89557 -15.47915 -14.95513 -14.75528 -14.37339 -13.83103 -13.65567 -13.52809 -13.32454 -13.22986 -12.59262 -12.54380 -12.44177 -12.06591 -11.95703 -11.88000 -11.64334 -11.58654 -11.28304 -11.17730 -10.84780 -10.74200 -10.55732 -10.33506 -10.25242 -10.10176 -9.77444 -9.34925 -8.98561 -8.41914 -8.38862 -7.06438 -5.83621 -3.14421 2.64216 3.03107 3.40186 3.45368 3.47101 3.62764 4.00620 4.40539 4.53331 4.56162 4.75460 4.81925 4.99592 5.03387 5.10086 5.20658 5.28388 5.32246 5.36784 5.48524 5.54153 5.58850 5.62219 5.64821 5.69102 5.73975 5.77172 5.89625 6.02144 6.07162 6.12040 6.21049 6.29266 6.36724 6.58235 6.60875 6.79619 6.87619 6.90177 7.63701 7.73148 8.32335 8.34573 9.45200 9.99311 10.33963 11.38520 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032813 B = 0.003709 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.106971 B = 7548.388179 C = 7612.415669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.526 5.526 3 C -0.001 4.001 4 C 0.100 3.900 5 H 0.100 0.900 6 C 0.543 3.457 7 O -0.534 6.534 8 N -0.609 5.609 9 C 0.094 3.906 10 C -0.154 4.154 11 C 0.172 3.828 12 H 0.067 0.933 13 N -0.715 5.715 14 C -0.246 4.246 15 H 0.073 0.927 16 C -0.009 4.009 17 N -0.930 5.930 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.100 3.900 23 C -0.184 4.184 24 C -0.172 4.172 25 C -0.176 4.176 26 H 0.029 0.971 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.057 0.943 31 H 0.026 0.974 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.567 6.708 -3.341 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.249 5.249 3 C -0.148 4.148 4 C -0.012 4.012 5 H 0.118 0.882 6 C 0.331 3.669 7 O -0.412 6.412 8 N -0.342 5.342 9 C -0.029 4.029 10 C -0.196 4.196 11 C 0.060 3.940 12 H 0.085 0.915 13 N -0.355 5.355 14 C -0.377 4.377 15 H 0.091 0.909 16 C -0.206 4.206 17 N -0.577 5.577 18 Si 0.739 3.261 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.023 4.023 23 C -0.204 4.204 24 C -0.209 4.209 25 C -0.214 4.214 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.132 0.868 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.221 0.779 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.985 6.903 -3.970 20.587 hybrid contribution 0.190 -0.258 1.032 1.081 sum -18.795 6.645 -2.938 20.150 Atomic orbital electron populations 1.22452 0.87164 1.02296 1.00672 1.62085 1.07684 1.15528 1.39585 1.22962 1.05282 0.87090 0.99452 1.21277 0.92446 0.98955 0.88539 0.88199 1.19817 0.89072 0.81752 0.76244 1.90525 1.67495 1.34285 1.48856 1.48484 1.09642 1.09319 1.66782 1.22496 0.96831 0.84910 0.98690 1.23571 0.95699 0.99422 1.00872 1.21179 0.87091 0.91541 0.94150 0.91493 1.42364 1.22040 1.14025 1.57060 1.19225 1.02688 0.90310 1.25468 0.90936 1.24770 0.98157 0.97679 0.99997 1.69664 1.22665 1.29872 1.35522 0.86174 0.79870 0.83006 0.77003 1.21611 1.21747 1.20667 1.22360 0.79718 0.98873 1.01373 1.22805 1.00926 1.05190 0.91461 1.23186 0.97362 0.97865 1.02453 1.23071 1.03703 0.97637 0.96941 0.95247 0.91090 0.91340 0.86816 0.92407 0.95556 0.91312 0.91454 0.90663 0.90468 0.77942 0.93342 0.91617 0.91134 0.87032 0.87626 0.88829 0.88559 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.37 60.07 0.56 0.76 16 2 N -0.53 -6.33 5.00 -244.59 -1.22 -7.55 16 3 C 0.00 -0.01 8.85 60.06 0.53 0.52 16 4 C 0.10 1.22 2.20 -68.86 -0.15 1.07 16 5 H 0.10 1.10 6.64 -51.93 -0.34 0.75 16 6 C 0.54 8.36 5.11 -10.99 -0.06 8.31 16 7 O -0.53 -9.72 12.76 5.56 0.07 -9.64 16 8 N -0.61 -9.27 3.33 -170.52 -0.57 -9.84 16 9 C 0.09 1.20 6.13 -2.53 -0.02 1.18 16 10 C -0.15 -2.42 6.77 -24.58 -0.17 -2.59 16 11 C 0.17 3.24 3.61 -66.10 -0.24 3.00 16 12 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 13 N -0.71 -17.20 5.22 -51.66 -0.27 -17.47 16 14 C -0.25 -6.56 9.96 -15.06 -0.15 -6.71 16 15 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 16 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 17 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 18 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.10 1.77 6.62 -3.06 -0.02 1.75 16 23 C -0.18 -2.01 4.15 -90.62 -0.38 -2.39 16 24 C -0.17 -2.12 9.55 -26.69 -0.25 -2.38 16 25 C -0.18 -1.87 10.13 -26.69 -0.27 -2.14 16 26 H 0.03 0.24 6.27 -51.93 -0.33 -0.09 16 27 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.11 1.74 4.96 -51.94 -0.26 1.49 16 30 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 31 H 0.03 0.31 6.97 -51.93 -0.36 -0.05 16 32 H 0.07 0.74 5.48 -51.93 -0.28 0.46 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.39 10.04 7.56 -40.82 -0.31 9.73 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 1.37 7.72 -51.93 -0.40 0.97 16 40 H 0.11 1.11 6.19 -51.93 -0.32 0.78 16 41 H 0.11 1.62 5.82 -51.93 -0.30 1.32 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.10 1.12 6.13 -51.93 -0.32 0.80 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -30.18 339.40 -8.87 -39.05 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -6.99 Total: 10.35 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.70 Total: 0.02 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -1.33 Total: -61.67 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.18 -8.87 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018964924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.040 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds