Wall clock time and date at job start Tue Mar 31 2020 05:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46854 * 110.99593 * 2 1 4 4 C 1.53037 * 109.52020 * 185.83724 * 3 2 1 5 5 C 1.53115 * 109.28292 * 300.82198 * 4 3 2 6 6 C 1.53117 * 109.16237 * 57.65184 * 5 4 3 7 7 C 1.46848 * 111.00073 * 124.20564 * 2 1 3 8 8 H 1.08991 * 109.45640 * 294.17400 * 7 2 1 9 9 C 1.50702 * 109.46021 * 54.15149 * 7 2 1 10 10 O 1.21283 * 120.00101 * 20.04766 * 9 7 2 11 11 N 1.34771 * 119.99746 * 200.05305 * 9 7 2 12 12 C 1.46504 * 119.99806 * 179.97438 * 11 9 7 13 13 H 1.09001 * 112.84810 * 23.80618 * 12 11 9 14 14 C 1.53784 * 113.61363 * 154.99918 * 12 11 9 15 15 C 1.53785 * 87.08114 * 89.20260 * 14 12 11 16 16 H 1.09007 * 113.60942 * 270.80200 * 15 14 12 17 17 N 1.46496 * 113.61216 * 139.98211 * 15 14 12 18 18 C 1.36945 * 119.99718 * 154.99972 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.53779 * 113.69374 * 252.53480 * 12 11 9 27 27 H 1.08997 * 109.47386 * 295.78920 * 1 2 3 28 28 H 1.08998 * 109.47368 * 55.79173 * 1 2 3 29 29 H 1.09007 * 109.47227 * 175.79016 * 1 2 3 30 30 H 1.08998 * 109.46366 * 65.82378 * 3 2 1 31 31 H 1.08997 * 109.45539 * 305.84460 * 3 2 1 32 32 H 1.09006 * 109.50180 * 180.87782 * 4 3 2 33 33 H 1.09000 * 109.50367 * 60.76403 * 4 3 2 34 34 H 1.09008 * 109.52413 * 297.75244 * 5 4 3 35 35 H 1.08995 * 109.52605 * 177.56124 * 5 4 3 36 36 H 1.09002 * 109.50885 * 182.40619 * 6 5 4 37 37 H 1.09005 * 109.53176 * 62.30775 * 6 5 4 38 38 H 0.96997 * 120.00296 * 359.97438 * 11 9 7 39 39 H 1.08999 * 113.61528 * 334.65264 * 14 12 11 40 40 H 1.09001 * 113.68984 * 203.76264 * 14 12 11 41 41 H 0.96996 * 120.00499 * 334.99702 * 17 15 14 42 42 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 43 43 H 1.08995 * 113.61453 * 156.32572 * 26 12 11 44 44 H 1.09003 * 113.61291 * 25.42293 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5180 1.3343 -0.1467 5 6 4.1188 0.5371 1.0144 6 6 3.5181 -0.8713 1.0209 7 6 1.9952 -0.7707 1.1338 8 1 1.7324 -0.2706 2.0659 9 6 1.3983 -2.1544 1.1206 10 8 0.9174 -2.5977 0.0992 11 7 1.3987 -2.8991 2.2438 12 6 0.8179 -4.2441 2.2312 13 1 0.7998 -4.6879 1.2358 14 6 1.3958 -5.1748 3.3103 15 6 0.2907 -4.6509 4.2426 16 1 0.5782 -3.7617 4.8039 17 7 -0.3056 -5.6888 5.0871 18 6 -0.8936 -5.3496 6.2764 19 1 -0.9174 -4.3170 6.5919 20 6 -1.4590 -6.3330 7.0764 21 7 -1.4296 -7.5915 6.6922 22 14 -2.2606 -5.8704 8.6991 23 1 -2.7852 -7.0931 9.3584 24 1 -1.2557 -5.2242 9.5811 25 1 -3.3785 -4.9259 8.4475 26 6 -0.5243 -4.3446 2.9749 27 1 -0.3634 0.4471 0.9253 28 1 -0.3634 0.5777 -0.8498 29 1 -0.3634 -1.0249 -0.0754 30 1 1.7323 1.8609 0.9376 31 1 1.5633 1.9256 -0.8331 32 1 3.9098 2.3514 -0.1310 33 1 3.7813 0.8569 -1.0906 34 1 3.8886 1.0356 1.9561 35 1 5.1997 0.4716 0.8905 36 1 3.9099 -1.4302 1.8708 37 1 3.7814 -1.3841 0.0957 38 1 1.7836 -2.5448 3.0606 39 1 2.4018 -4.9020 3.6292 40 1 1.3001 -6.2342 3.0720 41 1 -0.2839 -6.6163 4.8039 42 1 -1.8244 -8.2787 7.2514 43 1 -1.1457 -5.1765 2.6438 44 1 -1.0685 -3.4013 3.0230 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020300909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:22 Heat of formation + Delta-G solvation = -2.223381 kcal Electronic energy + Delta-G solvation = -22477.647214 eV Core-core repulsion = 19237.602254 eV Total energy + Delta-G solvation = -3240.044961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53463 -38.88918 -37.41946 -34.16060 -33.65018 -32.69792 -31.24481 -29.79408 -27.05269 -25.13471 -24.95696 -23.95981 -23.13608 -22.11911 -20.82289 -19.88654 -18.93446 -17.42209 -17.05343 -16.20936 -15.54765 -15.27928 -15.12249 -14.79862 -14.58505 -14.39691 -13.88710 -13.77820 -13.43922 -13.26750 -12.99622 -12.66273 -12.44077 -12.03951 -11.86538 -11.86018 -11.62944 -11.59020 -11.16042 -11.00837 -10.89685 -10.79280 -10.69921 -10.31828 -10.25881 -9.93111 -9.57138 -9.52958 -8.92089 -8.77169 -8.50099 -7.00188 -5.81640 -3.10862 2.64416 3.06137 3.40715 3.45325 3.46402 3.75388 4.45283 4.50653 4.55849 4.62068 4.84212 4.86965 4.95700 5.06267 5.19067 5.21664 5.26786 5.32459 5.39007 5.43587 5.48643 5.48947 5.61441 5.63550 5.79929 5.81619 5.85580 5.90425 5.99627 6.05837 6.14495 6.24645 6.31510 6.51170 6.61188 6.68532 6.75098 6.86017 7.07976 7.62526 7.64739 8.32559 8.36828 9.47903 10.05342 10.39710 11.40614 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029095 B = 0.003152 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.144356 B = 8881.328860 C = 9009.757774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.520 5.520 3 C 0.055 3.945 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.107 4.107 7 C 0.069 3.931 8 H 0.060 0.940 9 C 0.517 3.483 10 O -0.524 6.524 11 N -0.707 5.707 12 C 0.116 3.884 13 H 0.095 0.905 14 C -0.159 4.159 15 C 0.167 3.833 16 H 0.073 0.927 17 N -0.712 5.712 18 C -0.247 4.247 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.286 1.286 26 C -0.175 4.175 27 H 0.020 0.980 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.033 0.967 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.399 0.601 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.086 0.914 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.696 17.342 -12.283 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.072 4.072 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.145 4.145 7 C -0.043 4.043 8 H 0.078 0.922 9 C 0.303 3.697 10 O -0.399 6.399 11 N -0.358 5.358 12 C 0.011 3.989 13 H 0.114 0.886 14 C -0.199 4.199 15 C 0.054 3.946 16 H 0.091 0.909 17 N -0.350 5.350 18 C -0.378 4.378 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.218 4.218 27 H 0.039 0.961 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.233 0.767 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.220 0.780 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.410 16.826 -13.259 23.818 hybrid contribution -0.679 0.484 2.006 2.173 sum 9.731 17.310 -11.253 22.825 Atomic orbital electron populations 1.22604 0.86435 1.04454 0.99933 1.61654 1.08388 1.12842 1.41604 1.22147 0.95681 0.88769 1.00634 1.21619 0.94395 1.00157 0.99518 1.21579 1.00200 0.95214 0.98737 1.21551 0.91535 0.97992 1.03461 1.21612 0.96501 0.92378 0.93760 0.92187 1.20352 0.79089 0.86838 0.83470 1.90667 1.45179 1.72285 1.31777 1.45740 1.60917 1.16652 1.12460 1.21807 0.95658 0.81872 0.99569 0.88649 1.23855 0.99569 0.99781 0.96678 1.21618 0.91202 0.92751 0.89000 0.90934 1.42395 1.66576 1.05301 1.20735 1.19244 1.29441 0.93165 0.95924 0.91200 1.24768 1.01588 0.95328 0.99105 1.69650 1.50251 0.99342 1.38726 0.86264 0.79258 0.76995 0.83636 1.21637 1.21218 1.21225 1.24298 0.96145 1.01563 0.99772 0.96106 0.91325 0.89088 0.94900 0.90373 0.91398 0.90849 0.91974 0.91223 0.90812 0.90291 0.76697 0.91780 0.89041 0.77991 0.93343 0.89586 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.09 60.06 0.55 0.70 16 2 N -0.52 -5.86 4.51 -236.32 -1.07 -6.93 16 3 C 0.06 0.47 5.46 -3.83 -0.02 0.45 16 4 C -0.12 -0.87 6.09 -26.65 -0.16 -1.03 16 5 C -0.12 -0.85 6.00 -26.61 -0.16 -1.01 16 6 C -0.11 -0.96 5.36 -26.65 -0.14 -1.10 16 7 C 0.07 0.75 2.24 -68.87 -0.15 0.60 16 8 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 9 C 0.52 7.08 6.26 -10.99 -0.07 7.01 16 10 O -0.52 -9.09 14.13 5.56 0.08 -9.01 16 11 N -0.71 -9.07 5.27 -53.01 -0.28 -9.35 16 12 C 0.12 1.75 4.32 -67.12 -0.29 1.47 16 13 H 0.10 1.53 7.46 -51.93 -0.39 1.15 16 14 C -0.16 -2.49 7.58 -25.92 -0.20 -2.69 16 15 C 0.17 3.17 4.36 -67.12 -0.29 2.87 16 16 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 17 N -0.71 -17.53 5.40 -52.64 -0.28 -17.81 16 18 C -0.25 -6.75 9.97 -15.06 -0.15 -6.90 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 22 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C -0.18 -3.09 7.68 -25.92 -0.20 -3.28 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 29 H 0.09 1.29 5.63 -51.93 -0.29 1.00 16 30 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.40 4.26 8.70 -40.82 -0.36 3.90 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.48 8.12 -51.93 -0.42 1.06 16 41 H 0.39 10.09 7.92 -40.82 -0.32 9.77 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -31.72 349.11 -9.64 -41.35 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.66 Total: 9.91 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.39 Total: -3.34 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.90 Total: -61.27 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.72 -9.64 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020300909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.130 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds