Wall clock time and date at job start Tue Mar 31 2020 05:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46850 * 110.99910 * 2 1 4 4 C 1.53033 * 109.52021 * 174.16107 * 3 2 1 5 5 C 1.53117 * 109.28196 * 59.17821 * 4 3 2 6 6 C 1.53117 * 109.15945 * 302.34618 * 5 4 3 7 7 C 1.46845 * 110.99954 * 235.78893 * 2 1 3 8 8 H 1.09002 * 109.46296 * 65.82325 * 7 2 1 9 9 C 1.50700 * 109.46474 * 305.84298 * 7 2 1 10 10 O 1.21285 * 119.99729 * 339.98336 * 9 7 2 11 11 N 1.34776 * 120.00364 * 159.97760 * 9 7 2 12 12 C 1.46490 * 120.00115 * 180.02562 * 11 9 7 13 13 H 1.09003 * 112.85449 * 336.20067 * 12 11 9 14 14 C 1.53788 * 113.61609 * 107.50705 * 12 11 9 15 15 C 1.53775 * 87.07879 * 89.11370 * 14 12 11 16 16 H 1.09005 * 113.61818 * 270.88253 * 15 14 12 17 17 N 1.46504 * 113.68737 * 139.99483 * 15 14 12 18 18 C 1.36943 * 119.99903 * 107.46585 * 17 15 14 19 19 H 1.07997 * 119.99986 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99659 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99687 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00421 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47334 * 90.00386 * 22 20 18 24 24 H 1.48496 * 109.47372 * 210.00730 * 22 20 18 25 25 H 1.48502 * 109.47094 * 330.00622 * 22 20 18 26 26 C 1.53779 * 87.08553 * 25.43676 * 15 14 12 27 27 H 1.08998 * 109.47039 * 184.20740 * 1 2 3 28 28 H 1.08997 * 109.47215 * 304.21307 * 1 2 3 29 29 H 1.09003 * 109.46876 * 64.21334 * 1 2 3 30 30 H 1.09007 * 109.46004 * 294.17719 * 3 2 1 31 31 H 1.09000 * 109.46146 * 54.14953 * 3 2 1 32 32 H 1.09008 * 109.49978 * 179.12138 * 4 3 2 33 33 H 1.08998 * 109.50499 * 299.23443 * 4 3 2 34 34 H 1.09002 * 109.52444 * 62.24773 * 5 4 3 35 35 H 1.08999 * 109.52241 * 182.37072 * 5 4 3 36 36 H 1.09004 * 109.49786 * 297.71013 * 6 5 4 37 37 H 1.09001 * 109.50413 * 177.59473 * 6 5 4 38 38 H 0.96999 * 119.99391 * 0.02562 * 11 9 7 39 39 H 1.09003 * 113.61434 * 203.66831 * 14 12 11 40 40 H 1.08997 * 113.61138 * 334.56600 * 14 12 11 41 41 H 0.96999 * 119.99904 * 287.46285 * 17 15 14 42 42 H 0.96998 * 119.99917 * 179.97438 * 21 20 18 43 43 H 1.08996 * 113.61336 * 220.02020 * 26 15 14 44 44 H 1.09004 * 113.69115 * 89.12238 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1188 0.5369 -1.0143 6 6 3.5181 -0.8715 -1.0208 7 6 1.9953 -0.7708 -1.1337 8 1 1.7325 -0.2709 -2.0660 9 6 1.3985 -2.1545 -1.1204 10 8 0.9172 -2.5975 -0.0991 11 7 1.3994 -2.8997 -2.2434 12 6 0.8188 -4.2446 -2.2305 13 1 0.8002 -4.6882 -1.2350 14 6 -0.5226 -4.3437 -2.9762 15 6 0.2940 -4.6504 -4.2426 16 1 0.5825 -3.7607 -4.8024 17 7 -0.3009 -5.6872 -5.0897 18 6 -0.8866 -5.3465 -6.2797 19 1 -0.9104 -4.3134 -6.5935 20 6 -1.4507 -6.3289 -7.0820 21 7 -2.0132 -6.0014 -8.2260 22 14 -1.4101 -8.1156 -6.5388 23 1 -2.6259 -8.4185 -5.7417 24 1 -1.3701 -8.9957 -7.7342 25 1 -0.2020 -8.3533 -5.7085 26 6 1.3973 -5.1757 -3.3091 27 1 -0.3633 -1.0249 0.0754 28 1 -0.3633 0.5778 0.8498 29 1 -0.3633 0.4471 -0.9254 30 1 1.7324 1.8609 -0.9376 31 1 1.5635 1.9257 0.8330 32 1 3.9099 2.3513 0.1310 33 1 3.7813 0.8568 1.0906 34 1 3.8887 1.0354 -1.9560 35 1 5.1999 0.4724 -0.8911 36 1 3.7814 -1.3835 -0.0952 37 1 3.9099 -1.4303 -1.8707 38 1 1.7846 -2.5455 -3.0601 39 1 -1.1453 -5.1751 -2.6460 40 1 -1.0658 -3.3999 -3.0248 41 1 -0.2797 -6.6151 -4.8076 42 1 -2.4070 -6.6879 -8.7868 43 1 2.4039 -4.9037 -3.6265 44 1 1.3007 -6.2347 -3.0693 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020300910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:24 Heat of formation + Delta-G solvation = 1.867778 kcal Electronic energy + Delta-G solvation = -22522.427714 eV Core-core repulsion = 19282.560159 eV Total energy + Delta-G solvation = -3239.867555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.58227 -38.98467 -37.49752 -34.26073 -33.68281 -32.71944 -31.31546 -30.33339 -27.07737 -25.26141 -25.07262 -23.92496 -23.12928 -21.90036 -20.88240 -19.90522 -19.18623 -17.55603 -17.33881 -16.25476 -15.58114 -15.34633 -15.16411 -14.76967 -14.60080 -14.52698 -14.18035 -13.66061 -13.36210 -13.28652 -12.95559 -12.67856 -12.48473 -12.21934 -12.10001 -12.03194 -11.85545 -11.62395 -11.18633 -11.04391 -10.98575 -10.89269 -10.71752 -10.41507 -10.23373 -9.91840 -9.60431 -9.58004 -8.96928 -8.83889 -8.51882 -7.31848 -5.82679 -3.18667 2.59887 3.01204 3.34208 3.37297 3.42471 3.73093 4.43126 4.48599 4.54302 4.60749 4.81659 4.84016 4.90997 4.97694 5.08619 5.18582 5.24100 5.25706 5.31368 5.37604 5.39157 5.47620 5.60232 5.62230 5.67519 5.73160 5.78626 5.80116 5.92647 5.99800 6.04665 6.09824 6.16115 6.42294 6.49406 6.55584 6.72243 6.84266 6.94421 7.56748 7.92858 8.27411 8.36934 9.14399 9.87067 10.06637 11.35476 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033360 B = 0.003199 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.117129 B = 8749.873795 C = 8780.573845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.520 5.520 3 C 0.055 3.945 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.107 4.107 7 C 0.069 3.931 8 H 0.061 0.939 9 C 0.518 3.482 10 O -0.524 6.524 11 N -0.707 5.707 12 C 0.118 3.882 13 H 0.097 0.903 14 C -0.176 4.176 15 C 0.172 3.828 16 H 0.081 0.919 17 N -0.737 5.737 18 C -0.250 4.250 19 H 0.090 0.910 20 C 0.005 3.995 21 N -0.932 5.932 22 Si 0.885 3.115 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.276 1.276 26 C -0.162 4.162 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.021 0.979 30 H 0.033 0.967 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.400 0.600 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.363 0.637 42 H 0.260 0.740 43 H 0.067 0.933 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.162 13.858 16.053 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.072 4.072 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.145 4.145 7 C -0.043 4.043 8 H 0.079 0.921 9 C 0.303 3.697 10 O -0.399 6.399 11 N -0.359 5.359 12 C 0.012 3.988 13 H 0.115 0.885 14 C -0.218 4.218 15 C 0.061 3.939 16 H 0.099 0.901 17 N -0.376 5.376 18 C -0.380 4.380 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.580 5.580 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.202 4.202 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.234 0.766 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.196 0.804 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.857 13.410 16.975 24.669 hybrid contribution -0.273 -0.726 -0.948 1.224 sum 11.585 12.684 16.028 23.494 Atomic orbital electron populations 1.22605 0.86419 1.04421 0.99995 1.61656 1.08400 1.12883 1.41571 1.22149 0.95672 0.88740 1.00681 1.21618 0.94397 1.00178 0.99495 1.21579 1.00199 0.95198 0.98776 1.21548 0.91518 0.98030 1.03418 1.21611 0.96499 0.92309 0.93848 0.92092 1.20367 0.79019 0.86860 0.83410 1.90668 1.45133 1.72308 1.31777 1.45730 1.60991 1.16541 1.12591 1.21777 0.95468 0.82018 0.99521 0.88517 1.24267 0.96265 1.01901 0.99349 1.21605 0.90970 0.92591 0.88750 0.90088 1.42750 1.68495 1.04416 1.21959 1.19122 1.29126 0.95476 0.94274 0.89197 1.24701 1.00261 0.97590 0.96506 1.69702 1.43123 1.32668 1.12476 0.86541 0.77852 0.86401 0.77683 1.20995 1.21680 1.20251 1.23876 0.99857 0.99666 0.96810 0.89128 0.91312 0.96041 0.94847 0.90358 0.91376 0.90869 0.91935 0.91220 0.90322 0.90813 0.76571 0.89672 0.92069 0.80372 0.92980 0.91413 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.10 60.07 0.55 0.70 16 2 N -0.52 -5.75 4.51 -236.32 -1.07 -6.82 16 3 C 0.06 0.47 5.46 -3.83 -0.02 0.45 16 4 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 5 C -0.12 -0.84 6.00 -26.61 -0.16 -1.00 16 6 C -0.11 -0.93 5.35 -26.65 -0.14 -1.07 16 7 C 0.07 0.73 2.24 -68.88 -0.15 0.58 16 8 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 9 C 0.52 6.86 6.26 -10.99 -0.07 6.79 16 10 O -0.52 -8.82 14.13 5.55 0.08 -8.74 16 11 N -0.71 -8.67 5.26 -53.02 -0.28 -8.95 16 12 C 0.12 1.67 4.32 -67.12 -0.29 1.38 16 13 H 0.10 1.46 7.46 -51.93 -0.39 1.07 16 14 C -0.18 -2.92 7.68 -25.92 -0.20 -3.11 16 15 C 0.17 3.11 4.35 -67.12 -0.29 2.82 16 16 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 17 N -0.74 -16.93 5.21 -52.64 -0.27 -17.21 16 18 C -0.25 -6.92 10.45 -15.06 -0.16 -7.08 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 21 N -0.93 -28.99 13.97 55.49 0.78 -28.22 16 22 Si 0.89 21.83 27.74 -169.99 -4.71 17.11 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 26 C -0.16 -2.36 7.58 -25.92 -0.20 -2.55 16 27 H 0.09 1.26 5.63 -51.93 -0.29 0.97 16 28 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.40 4.07 8.70 -40.82 -0.36 3.71 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.36 8.21 5.79 -40.82 -0.24 7.98 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.30 8.12 -51.93 -0.42 0.88 16 LS Contribution 345.99 15.07 5.21 5.21 Total: -1.00 -32.63 345.99 -9.28 -41.91 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -7.62 Total: 8.76 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.39 Total: -3.06 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.84 Total: -61.19 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.08 Total: -8.74 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.63 -9.28 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020300910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.777 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds