Wall clock time and date at job start Tue Mar 31 2020 05:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46850 * 110.99910 * 2 1 4 4 C 1.53033 * 109.52021 * 174.16107 * 3 2 1 5 5 C 1.53117 * 109.28196 * 59.17821 * 4 3 2 6 6 C 1.53117 * 109.15945 * 302.34618 * 5 4 3 7 7 C 1.46845 * 110.99954 * 235.78893 * 2 1 3 8 8 H 1.09002 * 109.46296 * 65.82325 * 7 2 1 9 9 C 1.50700 * 109.46474 * 305.84298 * 7 2 1 10 10 O 1.21285 * 119.99729 * 339.98336 * 9 7 2 11 11 N 1.34776 * 120.00364 * 159.97760 * 9 7 2 12 12 C 1.46490 * 120.00115 * 180.02562 * 11 9 7 13 13 H 1.09003 * 112.85449 * 336.20067 * 12 11 9 14 14 C 1.53788 * 113.61609 * 107.50705 * 12 11 9 15 15 C 1.53775 * 87.07879 * 89.11370 * 14 12 11 16 16 H 1.09005 * 113.61818 * 270.88253 * 15 14 12 17 17 N 1.46504 * 113.68737 * 139.99483 * 15 14 12 18 18 C 1.36943 * 119.99903 * 107.46585 * 17 15 14 19 19 H 1.07997 * 119.99986 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99659 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99687 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00421 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47334 * 90.00386 * 22 20 18 24 24 H 1.48496 * 109.47372 * 210.00730 * 22 20 18 25 25 H 1.48502 * 109.47094 * 330.00622 * 22 20 18 26 26 C 1.53779 * 87.08553 * 25.43676 * 15 14 12 27 27 H 1.08998 * 109.47039 * 184.20740 * 1 2 3 28 28 H 1.08997 * 109.47215 * 304.21307 * 1 2 3 29 29 H 1.09003 * 109.46876 * 64.21334 * 1 2 3 30 30 H 1.09007 * 109.46004 * 294.17719 * 3 2 1 31 31 H 1.09000 * 109.46146 * 54.14953 * 3 2 1 32 32 H 1.09008 * 109.49978 * 179.12138 * 4 3 2 33 33 H 1.08998 * 109.50499 * 299.23443 * 4 3 2 34 34 H 1.09002 * 109.52444 * 62.24773 * 5 4 3 35 35 H 1.08999 * 109.52241 * 182.37072 * 5 4 3 36 36 H 1.09004 * 109.49786 * 297.71013 * 6 5 4 37 37 H 1.09001 * 109.50413 * 177.59473 * 6 5 4 38 38 H 0.96999 * 119.99391 * 0.02562 * 11 9 7 39 39 H 1.09003 * 113.61434 * 203.66831 * 14 12 11 40 40 H 1.08997 * 113.61138 * 334.56600 * 14 12 11 41 41 H 0.96999 * 119.99904 * 287.46285 * 17 15 14 42 42 H 0.96998 * 119.99917 * 179.97438 * 21 20 18 43 43 H 1.08996 * 113.61336 * 220.02020 * 26 15 14 44 44 H 1.09004 * 113.69115 * 89.12238 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1188 0.5369 -1.0143 6 6 3.5181 -0.8715 -1.0208 7 6 1.9953 -0.7708 -1.1337 8 1 1.7325 -0.2709 -2.0660 9 6 1.3985 -2.1545 -1.1204 10 8 0.9172 -2.5975 -0.0991 11 7 1.3994 -2.8997 -2.2434 12 6 0.8188 -4.2446 -2.2305 13 1 0.8002 -4.6882 -1.2350 14 6 -0.5226 -4.3437 -2.9762 15 6 0.2940 -4.6504 -4.2426 16 1 0.5825 -3.7607 -4.8024 17 7 -0.3009 -5.6872 -5.0897 18 6 -0.8866 -5.3465 -6.2797 19 1 -0.9104 -4.3134 -6.5935 20 6 -1.4507 -6.3289 -7.0820 21 7 -2.0132 -6.0014 -8.2260 22 14 -1.4101 -8.1156 -6.5388 23 1 -2.6259 -8.4185 -5.7417 24 1 -1.3701 -8.9957 -7.7342 25 1 -0.2020 -8.3533 -5.7085 26 6 1.3973 -5.1757 -3.3091 27 1 -0.3633 -1.0249 0.0754 28 1 -0.3633 0.5778 0.8498 29 1 -0.3633 0.4471 -0.9254 30 1 1.7324 1.8609 -0.9376 31 1 1.5635 1.9257 0.8330 32 1 3.9099 2.3513 0.1310 33 1 3.7813 0.8568 1.0906 34 1 3.8887 1.0354 -1.9560 35 1 5.1999 0.4724 -0.8911 36 1 3.7814 -1.3835 -0.0952 37 1 3.9099 -1.4303 -1.8707 38 1 1.7846 -2.5455 -3.0601 39 1 -1.1453 -5.1751 -2.6460 40 1 -1.0658 -3.3999 -3.0248 41 1 -0.2797 -6.6151 -4.8076 42 1 -2.4070 -6.6879 -8.7868 43 1 2.4039 -4.9037 -3.6265 44 1 1.3007 -6.2347 -3.0693 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020300910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:24 Heat of formation + Delta-G solvation = -22.070809 kcal Electronic energy + Delta-G solvation = -22523.465769 eV Core-core repulsion = 19282.560159 eV Total energy + Delta-G solvation = -3240.905610 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.59780 -40.09977 -38.56383 -35.87616 -34.57616 -34.06912 -32.65805 -31.71655 -27.87924 -26.61450 -26.50794 -25.06563 -23.91764 -23.45017 -21.83235 -20.71793 -20.58148 -19.43342 -18.36096 -17.33241 -16.80560 -16.40124 -16.30161 -16.09064 -15.75297 -15.43394 -15.25095 -14.94117 -14.53438 -14.29898 -14.05034 -13.98046 -13.87443 -13.60335 -13.37560 -13.05864 -12.88364 -12.70831 -12.57620 -12.33927 -12.05492 -11.90057 -11.84972 -11.78656 -11.61361 -11.33717 -11.24466 -10.90016 -10.60738 -10.02660 -9.32228 -9.28629 -8.03353 -5.36623 1.38430 1.41709 1.48848 1.56284 2.02816 2.48255 2.92721 3.26809 3.59461 3.64261 3.71357 3.77380 3.83900 3.99536 4.06631 4.16425 4.23080 4.26451 4.30192 4.44050 4.50211 4.58771 4.68355 4.76747 4.83155 4.87050 4.91039 4.97913 5.03463 5.05529 5.11420 5.15527 5.19554 5.22928 5.25485 5.46386 5.65560 5.76354 5.92169 6.09846 6.21828 6.57627 7.07103 7.25305 7.84044 8.02552 9.18093 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033360 B = 0.003199 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.117129 B = 8749.873795 C = 8780.573845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.538 5.538 3 C 0.053 3.947 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.104 4.104 7 C 0.072 3.928 8 H 0.074 0.926 9 C 0.517 3.483 10 O -0.562 6.562 11 N -0.699 5.699 12 C 0.134 3.866 13 H 0.093 0.907 14 C -0.174 4.174 15 C 0.155 3.845 16 H 0.080 0.920 17 N -0.742 5.742 18 C -0.234 4.234 19 H 0.058 0.942 20 C -0.065 4.065 21 N -0.985 5.985 22 Si 0.955 3.045 23 H -0.282 1.282 24 H -0.297 1.297 25 H -0.247 1.247 26 C -0.141 4.141 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.025 0.975 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.412 0.588 39 H 0.079 0.921 40 H 0.051 0.949 41 H 0.367 0.633 42 H 0.257 0.743 43 H 0.090 0.910 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.261 14.124 17.275 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.263 5.263 3 C -0.074 4.074 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.142 4.142 7 C -0.040 4.040 8 H 0.092 0.908 9 C 0.304 3.696 10 O -0.440 6.440 11 N -0.351 5.351 12 C 0.027 3.973 13 H 0.111 0.889 14 C -0.216 4.216 15 C 0.046 3.954 16 H 0.098 0.902 17 N -0.383 5.383 18 C -0.365 4.365 19 H 0.076 0.924 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.782 3.218 23 H -0.208 1.208 24 H -0.224 1.224 25 H -0.171 1.171 26 C -0.180 4.180 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.249 0.751 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.201 0.799 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.013 13.715 18.240 26.780 hybrid contribution -0.940 -0.668 -1.282 1.725 sum 13.073 13.047 16.958 25.074 Atomic orbital electron populations 1.22495 0.87103 1.02717 1.00728 1.61668 1.08033 1.14558 1.42081 1.22250 0.96576 0.87271 1.01264 1.21628 0.93402 1.01320 0.99128 1.21587 1.00846 0.93885 0.99095 1.21570 0.90056 0.99416 1.03187 1.21664 0.97528 0.90439 0.94352 0.90798 1.20917 0.78162 0.87751 0.82782 1.90654 1.46830 1.73305 1.33245 1.45654 1.60513 1.15838 1.13102 1.21507 0.93766 0.82973 0.99010 0.88885 1.24167 0.97273 1.01201 0.98942 1.21946 0.92790 0.91964 0.88740 0.90210 1.42753 1.68777 1.05685 1.21046 1.19108 1.27874 0.94037 0.95486 0.92381 1.25529 1.00844 1.02519 0.96782 1.69885 1.45266 1.34065 1.14277 0.85414 0.78906 0.80247 0.77252 1.20824 1.22379 1.17145 1.23704 0.99598 1.00017 0.94729 0.92043 0.90237 0.95603 0.94197 0.89799 0.89385 0.91864 0.90996 0.89861 0.91951 0.89407 0.75103 0.90277 0.93034 0.79918 0.93376 0.89117 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.10 127.69 1.16 1.55 16 2 N -0.54 -11.28 4.51 -901.59 -4.06 -15.34 16 3 C 0.05 0.79 5.46 86.32 0.47 1.26 16 4 C -0.12 -1.38 6.09 30.64 0.19 -1.19 16 5 C -0.12 -1.29 6.00 30.67 0.18 -1.10 16 6 C -0.10 -1.58 5.35 30.65 0.16 -1.41 16 7 C 0.07 1.40 2.24 44.19 0.10 1.50 16 8 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 9 C 0.52 13.17 6.26 87.66 0.55 13.72 16 10 O -0.56 -18.89 14.13 -3.04 -0.04 -18.93 16 11 N -0.70 -15.94 5.26 -440.03 -2.32 -18.26 16 12 C 0.13 3.56 4.32 45.52 0.20 3.75 16 13 H 0.09 2.65 7.46 -2.39 -0.02 2.64 16 14 C -0.17 -5.62 7.68 31.12 0.24 -5.38 16 15 C 0.15 5.38 4.35 45.51 0.20 5.58 16 16 H 0.08 2.78 8.10 -2.38 -0.02 2.76 16 17 N -0.74 -33.23 5.21 -320.44 -1.67 -34.90 16 18 C -0.23 -13.06 10.45 84.03 0.88 -12.18 16 19 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 20 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 21 N -0.98 -62.77 13.97 21.65 0.30 -62.46 16 22 Si 0.95 44.89 27.74 68.60 1.90 46.80 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 25 H -0.25 -10.30 6.52 99.48 0.65 -9.65 16 26 C -0.14 -3.69 7.58 31.12 0.24 -3.46 16 27 H 0.06 1.74 5.63 -2.39 -0.01 1.73 16 28 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16 29 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.04 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 32 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.41 7.42 8.70 -92.71 -0.81 6.62 16 39 H 0.08 2.66 8.14 -2.39 -0.02 2.65 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.37 15.76 5.79 -92.71 -0.54 15.23 16 42 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.10 2.47 8.12 -2.38 -0.02 2.45 16 Total: -1.00 -71.87 345.99 -1.27 -73.15 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.42 Total: 30.67 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 5.03 Total: -0.71 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -7.75 Total: -130.97 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.04 Total: -18.93 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.80 kcal Total: -71.87 -1.27 -73.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020300910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.075 kcal (2) G-P(sol) polarization free energy of solvation -71.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds