Wall clock time and date at job start Tue Mar 31 2020 05:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34783 * 119.99683 * 2 1 4 4 O 1.21274 * 119.99912 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.99776 * 0.02562 * 3 2 1 6 6 N 1.46901 * 109.46766 * 180.02562 * 5 3 2 7 7 C 1.48530 * 111.00381 * 52.60159 * 6 5 3 8 8 C 1.54935 * 103.22884 * 159.72342 * 7 6 5 9 9 C 1.54592 * 102.92137 * 322.58487 * 8 7 6 10 10 C 1.47901 * 111.00008 * 170.00025 * 6 5 3 11 11 C 1.46495 * 120.00169 * 180.02562 * 2 1 3 12 12 H 1.09008 * 110.91588 * 190.27250 * 11 2 1 13 13 C 1.55157 * 111.00402 * 66.37028 * 11 2 1 14 14 C 1.54326 * 103.10330 * 277.51409 * 13 11 2 15 15 N 1.47026 * 107.26795 * 337.72272 * 14 13 11 16 16 C 1.36936 * 125.64567 * 178.90773 * 15 14 13 17 17 H 1.07996 * 120.00190 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00346 * 0.02562 * 16 15 14 19 19 N 1.31624 * 119.99442 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00129 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47428 * 90.00120 * 20 18 16 22 22 H 1.48502 * 109.46802 * 209.99720 * 20 18 16 23 23 H 1.48497 * 109.47150 * 329.99570 * 20 18 16 24 24 C 1.47427 * 108.70696 * 358.93642 * 15 14 13 25 25 H 1.09006 * 109.47125 * 273.12561 * 1 2 3 26 26 H 1.08997 * 109.47931 * 33.12248 * 1 2 3 27 27 H 1.09005 * 109.47417 * 153.13129 * 1 2 3 28 28 H 1.08998 * 109.46963 * 299.99273 * 5 3 2 29 29 H 1.08992 * 109.47575 * 59.99679 * 5 3 2 30 30 H 1.09009 * 110.66307 * 278.15984 * 7 6 5 31 31 H 1.08998 * 110.67091 * 41.28416 * 7 6 5 32 32 H 1.09005 * 110.72189 * 204.22626 * 8 7 6 33 33 H 1.08997 * 110.72526 * 80.94152 * 8 7 6 34 34 H 1.09008 * 110.30785 * 263.04597 * 9 8 7 35 35 H 1.08996 * 110.31368 * 140.87595 * 9 8 7 36 36 H 1.09004 * 109.91349 * 333.50315 * 10 6 5 37 37 H 1.08999 * 109.92146 * 94.60442 * 10 6 5 38 38 H 1.09004 * 110.71689 * 159.06582 * 13 11 2 39 39 H 1.08994 * 110.72207 * 35.96622 * 13 11 2 40 40 H 1.09000 * 109.88037 * 97.13254 * 14 13 11 41 41 H 1.08994 * 109.88085 * 218.14839 * 14 13 11 42 42 H 0.96998 * 119.99795 * 179.97438 * 19 18 16 43 43 H 1.08993 * 110.36893 * 142.96960 * 24 15 14 44 44 H 1.09003 * 110.36597 * 265.18492 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3852 2.4723 0.0006 6 7 2.3398 3.5889 -0.0002 7 6 3.3250 3.4463 -1.1025 8 6 3.8688 4.8861 -1.2805 9 6 2.6144 5.7602 -1.0515 10 6 1.6504 4.8754 -0.2394 11 6 2.1975 -1.2687 -0.0006 12 1 3.2598 -1.1048 0.1811 13 6 1.9728 -2.0400 -1.3279 14 6 0.6236 -2.7520 -1.0947 15 7 0.4276 -2.8504 0.3591 16 6 -0.6612 -3.3995 0.9822 17 1 -0.7109 -3.4238 2.0607 18 6 -1.7011 -3.9250 0.2276 19 7 -1.6403 -3.8958 -1.0870 20 14 -3.1866 -4.6733 1.0776 21 1 -4.2108 -3.6217 1.3014 22 1 -3.7571 -5.7461 0.2238 23 1 -2.7728 -5.2472 2.3832 24 6 1.5970 -2.2595 1.0349 25 1 -0.3634 0.0560 1.0262 26 1 -0.3635 0.8606 -0.5615 27 1 -0.3634 -0.9167 -0.4645 28 1 0.7583 2.5302 -0.8892 29 1 0.7589 2.5298 0.8907 30 1 4.1264 2.7650 -0.8164 31 1 2.8354 3.1045 -2.0144 32 1 4.2598 5.0290 -2.2879 33 1 4.6327 5.1049 -0.5344 34 1 2.1641 6.0331 -2.0060 35 1 2.8746 6.6546 -0.4855 36 1 0.7349 4.7062 -0.8062 37 1 1.4153 5.3532 0.7117 38 1 2.7689 -2.7663 -1.4914 39 1 1.9041 -1.3494 -2.1684 40 1 -0.1841 -2.1704 -1.5391 41 1 0.6491 -3.7483 -1.5360 42 1 -2.3667 -4.2633 -1.6143 43 1 1.2866 -1.7265 1.9336 44 1 2.3219 -3.0341 1.2854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033666743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:51 Heat of formation + Delta-G solvation = 17.982050 kcal Electronic energy + Delta-G solvation = -23289.777548 eV Core-core repulsion = 20050.608761 eV Total energy + Delta-G solvation = -3239.168787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.13043 -38.57769 -37.14645 -34.25207 -32.58384 -31.86961 -29.37119 -28.86936 -27.98019 -26.65026 -25.78060 -24.17005 -21.63439 -20.94993 -20.39533 -20.09757 -18.51670 -17.03933 -16.91301 -16.35773 -15.68309 -15.33043 -15.26377 -14.67286 -14.08219 -13.91360 -13.73536 -13.37005 -12.91485 -12.72553 -12.36753 -12.20464 -12.02151 -11.92611 -11.74851 -11.64448 -11.57064 -11.38963 -11.05724 -10.96895 -10.89866 -10.69999 -10.69169 -10.16988 -10.11296 -9.94644 -9.68819 -9.20094 -8.70822 -8.43234 -8.12397 -6.89409 -5.78278 -3.12055 2.90086 3.25404 3.35538 3.41977 3.43230 4.03628 4.44512 4.57472 4.59243 4.84071 4.88100 5.19463 5.23148 5.36585 5.37064 5.42584 5.46372 5.50864 5.59679 5.67798 5.68006 5.72136 5.74976 5.88298 5.92491 6.08180 6.11969 6.17675 6.27318 6.35324 6.49824 6.53013 6.62760 6.69500 6.84271 6.87327 7.12551 7.49862 7.52494 7.75109 7.86868 8.17094 8.52452 9.15021 9.74631 10.40617 11.33051 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031388 B = 0.003939 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.854083 B = 7105.845306 C = 7509.143018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.588 5.588 3 C 0.511 3.489 4 O -0.541 6.541 5 C 0.030 3.970 6 N -0.502 5.502 7 C 0.032 3.968 8 C -0.126 4.126 9 C -0.131 4.131 10 C 0.033 3.967 11 C 0.124 3.876 12 H 0.099 0.901 13 C -0.156 4.156 14 C 0.175 3.825 15 N -0.604 5.604 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.127 3.873 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.120 0.880 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.043 0.957 42 H 0.252 0.748 43 H 0.044 0.956 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 15.196 -1.249 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.320 5.320 3 C 0.299 3.701 4 O -0.420 6.420 5 C -0.101 4.101 6 N -0.227 5.227 7 C -0.095 4.095 8 C -0.164 4.164 9 C -0.169 4.169 10 C -0.095 4.095 11 C 0.020 3.980 12 H 0.116 0.884 13 C -0.195 4.195 14 C 0.050 3.950 15 N -0.331 5.331 16 C -0.355 4.355 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.000 4.000 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.138 0.862 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.575 15.053 -0.795 16.445 hybrid contribution -1.577 -0.507 -0.388 1.701 sum 4.998 14.546 -1.183 15.426 Atomic orbital electron populations 1.22231 0.78452 1.05069 1.02104 1.47718 1.07641 1.05092 1.71569 1.20375 0.88001 0.85184 0.76566 1.90573 1.13799 1.87007 1.50585 1.22240 0.94897 0.89938 1.03027 1.64668 1.13219 1.00382 1.44433 1.23518 0.97073 0.97331 0.91600 1.22531 0.97490 0.94891 1.01508 1.22390 0.96158 0.98574 0.99763 1.22931 0.96025 0.90628 0.99877 1.22321 0.96073 0.82526 0.97091 0.88353 1.23269 1.00915 0.99000 0.96348 1.21216 0.90658 0.98241 0.84855 1.44559 1.17609 1.69578 1.01344 1.19036 0.94112 1.31432 0.90939 0.90459 1.24777 0.98669 1.01249 0.95593 1.69961 1.32766 1.50958 1.03297 0.86134 0.82759 0.78658 0.78302 1.21617 1.21734 1.20747 1.21931 0.90493 0.93224 0.94322 0.92879 0.93200 0.86178 0.91940 0.87875 0.86890 0.94608 0.91326 0.90802 0.91686 0.91117 0.93818 0.90279 0.91428 0.92086 0.93200 0.93854 0.93720 0.93814 0.95115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.08 9.14 59.85 0.55 1.63 16 2 N -0.59 -10.14 2.91 -171.18 -0.50 -10.64 16 3 C 0.51 8.50 7.38 -10.98 -0.08 8.42 16 4 O -0.54 -10.24 12.93 5.56 0.07 -10.17 16 5 C 0.03 0.40 4.11 -4.98 -0.02 0.38 16 6 N -0.50 -6.67 5.26 -231.89 -1.22 -7.89 16 7 C 0.03 0.42 5.30 -1.90 -0.01 0.41 16 8 C -0.13 -1.29 7.06 -24.87 -0.18 -1.46 16 9 C -0.13 -1.18 6.93 -25.37 -0.18 -1.35 16 10 C 0.03 0.35 6.70 -2.75 -0.02 0.33 16 11 C 0.12 2.28 3.66 -65.52 -0.24 2.04 16 12 H 0.10 1.80 7.08 -51.92 -0.37 1.43 16 13 C -0.16 -2.92 6.54 -24.90 -0.16 -3.08 16 14 C 0.17 3.99 4.30 -3.06 -0.01 3.98 16 15 N -0.60 -14.37 2.23 -169.77 -0.38 -14.74 16 16 C -0.23 -5.95 10.28 -15.06 -0.15 -6.10 16 17 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 18 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -25.62 10.31 55.49 0.57 -25.05 16 20 Si 0.91 21.26 29.55 -169.99 -5.02 16.23 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.13 2.58 6.41 -2.27 -0.01 2.57 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.70 6.57 -51.93 -0.34 0.36 16 27 H 0.12 2.48 3.80 -51.93 -0.20 2.28 16 28 H 0.06 0.77 7.07 -51.93 -0.37 0.40 16 29 H 0.10 1.28 8.11 -51.93 -0.42 0.85 16 30 H 0.11 1.76 5.97 -51.92 -0.31 1.45 16 31 H 0.04 0.48 8.02 -51.93 -0.42 0.06 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.04 0.42 7.57 -51.93 -0.39 0.03 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.23 5.76 -51.93 -0.30 0.93 16 41 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 42 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -29.00 332.82 -9.35 -38.35 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.28 Total: 1.41 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -0.62 Total: 7.48 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -1.52 Total: -58.32 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.17 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.00 -9.35 -38.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033666743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.335 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds