Wall clock time and date at job start Tue Mar 31 2020 05:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34783 * 119.99683 * 2 1 4 4 O 1.21274 * 119.99912 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.99776 * 0.02562 * 3 2 1 6 6 N 1.46901 * 109.46766 * 180.02562 * 5 3 2 7 7 C 1.48530 * 111.00381 * 52.60159 * 6 5 3 8 8 C 1.54935 * 103.22884 * 159.72342 * 7 6 5 9 9 C 1.54592 * 102.92137 * 322.58487 * 8 7 6 10 10 C 1.47901 * 111.00008 * 170.00025 * 6 5 3 11 11 C 1.46495 * 120.00169 * 180.02562 * 2 1 3 12 12 H 1.09008 * 110.91588 * 190.27250 * 11 2 1 13 13 C 1.55157 * 111.00402 * 66.37028 * 11 2 1 14 14 C 1.54326 * 103.10330 * 277.51409 * 13 11 2 15 15 N 1.47026 * 107.26795 * 337.72272 * 14 13 11 16 16 C 1.36936 * 125.64567 * 178.90773 * 15 14 13 17 17 H 1.07996 * 120.00190 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00346 * 0.02562 * 16 15 14 19 19 N 1.31624 * 119.99442 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00129 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47428 * 90.00120 * 20 18 16 22 22 H 1.48502 * 109.46802 * 209.99720 * 20 18 16 23 23 H 1.48497 * 109.47150 * 329.99570 * 20 18 16 24 24 C 1.47427 * 108.70696 * 358.93642 * 15 14 13 25 25 H 1.09006 * 109.47125 * 273.12561 * 1 2 3 26 26 H 1.08997 * 109.47931 * 33.12248 * 1 2 3 27 27 H 1.09005 * 109.47417 * 153.13129 * 1 2 3 28 28 H 1.08998 * 109.46963 * 299.99273 * 5 3 2 29 29 H 1.08992 * 109.47575 * 59.99679 * 5 3 2 30 30 H 1.09009 * 110.66307 * 278.15984 * 7 6 5 31 31 H 1.08998 * 110.67091 * 41.28416 * 7 6 5 32 32 H 1.09005 * 110.72189 * 204.22626 * 8 7 6 33 33 H 1.08997 * 110.72526 * 80.94152 * 8 7 6 34 34 H 1.09008 * 110.30785 * 263.04597 * 9 8 7 35 35 H 1.08996 * 110.31368 * 140.87595 * 9 8 7 36 36 H 1.09004 * 109.91349 * 333.50315 * 10 6 5 37 37 H 1.08999 * 109.92146 * 94.60442 * 10 6 5 38 38 H 1.09004 * 110.71689 * 159.06582 * 13 11 2 39 39 H 1.08994 * 110.72207 * 35.96622 * 13 11 2 40 40 H 1.09000 * 109.88037 * 97.13254 * 14 13 11 41 41 H 1.08994 * 109.88085 * 218.14839 * 14 13 11 42 42 H 0.96998 * 119.99795 * 179.97438 * 19 18 16 43 43 H 1.08993 * 110.36893 * 142.96960 * 24 15 14 44 44 H 1.09003 * 110.36597 * 265.18492 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3852 2.4723 0.0006 6 7 2.3398 3.5889 -0.0002 7 6 3.3250 3.4463 -1.1025 8 6 3.8688 4.8861 -1.2805 9 6 2.6144 5.7602 -1.0515 10 6 1.6504 4.8754 -0.2394 11 6 2.1975 -1.2687 -0.0006 12 1 3.2598 -1.1048 0.1811 13 6 1.9728 -2.0400 -1.3279 14 6 0.6236 -2.7520 -1.0947 15 7 0.4276 -2.8504 0.3591 16 6 -0.6612 -3.3995 0.9822 17 1 -0.7109 -3.4238 2.0607 18 6 -1.7011 -3.9250 0.2276 19 7 -1.6403 -3.8958 -1.0870 20 14 -3.1866 -4.6733 1.0776 21 1 -4.2108 -3.6217 1.3014 22 1 -3.7571 -5.7461 0.2238 23 1 -2.7728 -5.2472 2.3832 24 6 1.5970 -2.2595 1.0349 25 1 -0.3634 0.0560 1.0262 26 1 -0.3635 0.8606 -0.5615 27 1 -0.3634 -0.9167 -0.4645 28 1 0.7583 2.5302 -0.8892 29 1 0.7589 2.5298 0.8907 30 1 4.1264 2.7650 -0.8164 31 1 2.8354 3.1045 -2.0144 32 1 4.2598 5.0290 -2.2879 33 1 4.6327 5.1049 -0.5344 34 1 2.1641 6.0331 -2.0060 35 1 2.8746 6.6546 -0.4855 36 1 0.7349 4.7062 -0.8062 37 1 1.4153 5.3532 0.7117 38 1 2.7689 -2.7663 -1.4914 39 1 1.9041 -1.3494 -2.1684 40 1 -0.1841 -2.1704 -1.5391 41 1 0.6491 -3.7483 -1.5360 42 1 -2.3667 -4.2633 -1.6143 43 1 1.2866 -1.7265 1.9336 44 1 2.3219 -3.0341 1.2854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033666743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:50 Heat of formation + Delta-G solvation = 0.041880 kcal Electronic energy + Delta-G solvation = -23290.555493 eV Core-core repulsion = 20050.608761 eV Total energy + Delta-G solvation = -3239.946731 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.43122 -39.78868 -38.53985 -35.83040 -34.14369 -33.10713 -31.15424 -29.74686 -29.56817 -27.83237 -27.31224 -25.92755 -22.76213 -21.94152 -21.79418 -21.59466 -19.91097 -18.90043 -18.24954 -17.51670 -16.81080 -16.66965 -16.47993 -16.44073 -15.63754 -15.31260 -15.00657 -14.55951 -14.28220 -13.97196 -13.82948 -13.50499 -13.43319 -13.35695 -13.14140 -13.01852 -12.82322 -12.75559 -12.51340 -12.33321 -12.18571 -12.02544 -12.00584 -11.81308 -11.63747 -11.52999 -11.42237 -10.68796 -10.52330 -9.60522 -9.38323 -8.84340 -7.81676 -5.16497 1.49777 1.50851 1.58905 1.60009 1.95952 2.51963 3.06295 3.38057 3.47984 3.67518 3.77036 3.89361 3.93696 4.03658 4.08724 4.20958 4.30483 4.35656 4.39559 4.45443 4.60841 4.67251 4.70096 4.74686 4.77462 4.91148 4.95024 4.97266 5.01112 5.03691 5.14934 5.18619 5.26712 5.33090 5.50670 5.61089 5.67652 5.80805 5.89402 5.97899 6.20579 6.51553 7.13159 7.20048 7.78401 8.43584 9.28187 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031388 B = 0.003939 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.854083 B = 7105.845306 C = 7509.143018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.592 5.592 3 C 0.509 3.491 4 O -0.565 6.565 5 C 0.036 3.964 6 N -0.521 5.521 7 C 0.031 3.969 8 C -0.122 4.122 9 C -0.126 4.126 10 C 0.031 3.969 11 C 0.135 3.865 12 H 0.104 0.896 13 C -0.141 4.141 14 C 0.188 3.812 15 N -0.615 5.615 16 C -0.234 4.234 17 H 0.079 0.921 18 C -0.057 4.057 19 N -0.947 5.947 20 Si 0.972 3.028 21 H -0.284 1.284 22 H -0.299 1.299 23 H -0.275 1.275 24 C 0.128 3.872 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.031 0.969 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.005 0.995 42 H 0.246 0.754 43 H 0.044 0.956 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.814 17.161 -0.834 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.323 5.323 3 C 0.299 3.701 4 O -0.445 6.445 5 C -0.095 4.095 6 N -0.246 5.246 7 C -0.096 4.096 8 C -0.160 4.160 9 C -0.164 4.164 10 C -0.097 4.097 11 C 0.030 3.970 12 H 0.122 0.878 13 C -0.181 4.181 14 C 0.064 3.936 15 N -0.342 5.342 16 C -0.363 4.363 17 H 0.097 0.903 18 C -0.250 4.250 19 N -0.596 5.596 20 Si 0.801 3.199 21 H -0.211 1.211 22 H -0.226 1.226 23 H -0.200 1.200 24 C 0.002 3.998 25 H 0.070 0.930 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.135 0.865 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.024 0.976 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.487 17.044 -0.358 18.240 hybrid contribution -1.490 -1.106 -0.485 1.918 sum 4.997 15.938 -0.844 16.724 Atomic orbital electron populations 1.22073 0.78168 1.04575 1.02080 1.47766 1.07723 1.05008 1.71845 1.20958 0.87866 0.85836 0.75473 1.90582 1.15032 1.87389 1.51483 1.22233 0.94708 0.88207 1.04331 1.64659 1.13749 1.01383 1.44784 1.23395 0.96398 0.98573 0.91240 1.22511 0.98039 0.93207 1.02270 1.22401 0.95047 0.98458 1.00461 1.23034 0.96472 0.89351 1.00802 1.22136 0.96307 0.82779 0.95801 0.87764 1.23126 0.98788 0.99112 0.97029 1.20932 0.92269 0.96189 0.84227 1.44707 1.18034 1.69512 1.01971 1.19325 0.94853 1.30898 0.91229 0.90280 1.25478 1.01152 1.02199 0.96167 1.70155 1.33138 1.51911 1.04407 0.85176 0.79766 0.77584 0.77363 1.21094 1.22573 1.19970 1.22010 0.89496 0.93666 0.94661 0.93029 0.90116 0.89727 0.90394 0.86505 0.89871 0.95106 0.89963 0.91127 0.90374 0.89726 0.92854 0.89462 0.90105 0.91083 0.95319 0.97633 0.94450 0.93794 0.94562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.41 9.14 127.77 1.17 3.58 16 2 N -0.59 -19.69 2.91 -813.89 -2.37 -22.06 16 3 C 0.51 16.22 7.38 87.66 0.65 16.87 16 4 O -0.57 -20.96 12.93 -3.01 -0.04 -21.00 16 5 C 0.04 0.89 4.11 85.56 0.35 1.24 16 6 N -0.52 -12.79 5.26 -887.58 -4.67 -17.46 16 7 C 0.03 0.79 5.30 86.65 0.46 1.24 16 8 C -0.12 -2.24 7.06 31.80 0.22 -2.02 16 9 C -0.13 -1.87 6.93 31.47 0.22 -1.65 16 10 C 0.03 0.55 6.70 86.45 0.58 1.12 16 11 C 0.13 4.82 3.66 46.55 0.17 4.99 16 12 H 0.10 3.68 7.08 -2.38 -0.02 3.66 16 13 C -0.14 -5.22 6.54 31.78 0.21 -5.01 16 14 C 0.19 8.80 4.30 86.73 0.37 9.17 16 15 N -0.62 -29.54 2.23 -691.02 -1.54 -31.09 16 16 C -0.23 -12.34 10.28 84.03 0.86 -11.48 16 17 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 18 C -0.06 -3.04 5.49 84.86 0.47 -2.58 16 19 N -0.95 -53.87 10.31 21.65 0.22 -53.65 16 20 Si 0.97 43.95 29.55 68.60 2.03 45.97 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 22 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 24 C 0.13 5.13 6.41 87.02 0.56 5.68 16 25 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.08 2.10 6.57 -2.39 -0.02 2.09 16 27 H 0.08 3.49 3.80 -2.38 -0.01 3.49 16 28 H 0.08 1.69 7.07 -2.39 -0.02 1.67 16 29 H 0.12 2.56 8.11 -2.39 -0.02 2.55 16 30 H 0.08 2.59 5.97 -2.38 -0.01 2.58 16 31 H 0.03 0.78 8.02 -2.39 -0.02 0.76 16 32 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.05 0.85 7.57 -2.39 -0.02 0.83 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.03 1.47 5.76 -2.39 -0.01 1.45 16 41 H 0.01 0.29 7.50 -2.39 -0.02 0.27 16 42 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 43 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 44 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -62.85 332.82 0.89 -61.96 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.97 Total: 16.16 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 6.29 Total: 21.16 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -8.36 Total: -124.25 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.04 Total: -21.00 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -62.85 0.89 -61.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033666743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.005 kcal (2) G-P(sol) polarization free energy of solvation -62.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds